Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11485

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11480 and ABZR87_RS11485 are separated by 170 nucleotides ABZR87_RS11480: ABZR87_RS11480 - 3-hydroxybutyrate oligomer hydrolase family protein, at 2,431,883 to 2,434,060 _RS11480 ABZR87_RS11485: ABZR87_RS11485 - ATP-dependent chaperone ClpB, at 2,434,231 to 2,436,819 _RS11485 Position (kb) 2434 2435 2436 2437Strain fitness (log2 ratio) -1 0 1 2at 2433.263 kb on + strand, within ABZR87_RS11480at 2433.263 kb on + strand, within ABZR87_RS11480at 2433.263 kb on + strand, within ABZR87_RS11480at 2433.264 kb on - strand, within ABZR87_RS11480at 2433.264 kb on - strand, within ABZR87_RS11480at 2433.704 kb on + strand, within ABZR87_RS11480at 2433.752 kb on + strand, within ABZR87_RS11480at 2433.752 kb on + strand, within ABZR87_RS11480at 2433.752 kb on + strand, within ABZR87_RS11480at 2433.753 kb on - strand, within ABZR87_RS11480at 2433.753 kb on - strand, within ABZR87_RS11480at 2433.753 kb on - strand, within ABZR87_RS11480at 2433.753 kb on - strand, within ABZR87_RS11480at 2433.754 kb on + strand, within ABZR87_RS11480at 2433.810 kb on - strand, within ABZR87_RS11480at 2433.810 kb on - strand, within ABZR87_RS11480at 2433.839 kb on + strand, within ABZR87_RS11480at 2433.839 kb on + strand, within ABZR87_RS11480at 2433.840 kb on - strand, within ABZR87_RS11480at 2433.866 kb on + strandat 2433.866 kb on + strandat 2433.866 kb on + strandat 2433.866 kb on + strandat 2433.866 kb on + strandat 2433.866 kb on + strandat 2433.867 kb on - strandat 2433.867 kb on - strandat 2433.867 kb on - strandat 2433.867 kb on - strandat 2433.867 kb on - strandat 2433.867 kb on - strandat 2434.190 kb on - strandat 2434.229 kb on + strandat 2434.230 kb on - strandat 2434.230 kb on - strandat 2434.312 kb on + strandat 2434.312 kb on + strandat 2434.312 kb on + strandat 2434.313 kb on - strandat 2434.313 kb on - strandat 2434.717 kb on + strand, within ABZR87_RS11485at 2434.718 kb on - strand, within ABZR87_RS11485at 2434.718 kb on - strand, within ABZR87_RS11485at 2434.978 kb on + strand, within ABZR87_RS11485at 2434.978 kb on + strand, within ABZR87_RS11485at 2435.191 kb on + strand, within ABZR87_RS11485at 2435.191 kb on + strand, within ABZR87_RS11485at 2435.192 kb on - strand, within ABZR87_RS11485at 2435.192 kb on - strand, within ABZR87_RS11485at 2435.297 kb on - strand, within ABZR87_RS11485at 2435.297 kb on - strand, within ABZR87_RS11485at 2435.297 kb on - strand, within ABZR87_RS11485at 2435.365 kb on + strand, within ABZR87_RS11485at 2435.366 kb on - strand, within ABZR87_RS11485at 2435.366 kb on - strand, within ABZR87_RS11485at 2435.427 kb on + strand, within ABZR87_RS11485at 2435.428 kb on - strand, within ABZR87_RS11485at 2435.428 kb on - strand, within ABZR87_RS11485at 2435.428 kb on - strand, within ABZR87_RS11485at 2435.437 kb on + strand, within ABZR87_RS11485at 2435.590 kb on + strand, within ABZR87_RS11485at 2435.591 kb on - strand, within ABZR87_RS11485at 2435.591 kb on - strand, within ABZR87_RS11485at 2435.735 kb on - strand, within ABZR87_RS11485at 2436.031 kb on + strand, within ABZR87_RS11485at 2436.196 kb on + strand, within ABZR87_RS11485at 2436.196 kb on + strand, within ABZR87_RS11485at 2436.196 kb on + strand, within ABZR87_RS11485at 2436.197 kb on - strand, within ABZR87_RS11485at 2436.220 kb on + strand, within ABZR87_RS11485at 2436.250 kb on + strand, within ABZR87_RS11485at 2436.251 kb on - strand, within ABZR87_RS11485at 2436.827 kb on + strandat 2436.827 kb on + strandat 2436.828 kb on - strandat 2436.838 kb on + strandat 2436.839 kb on - strandat 2437.242 kb on - strandat 2437.242 kb on - strandat 2437.242 kb on - strandat 2437.536 kb on + strandat 2437.536 kb on + strandat 2437.537 kb on - strandat 2437.537 kb on - strandat 2437.537 kb on - strandat 2437.537 kb on - strandat 2437.555 kb on + strandat 2437.555 kb on + strandat 2437.597 kb on + strandat 2437.597 kb on + strandat 2437.597 kb on + strandat 2437.598 kb on - strandat 2437.598 kb on - strandat 2437.598 kb on - strandat 2437.639 kb on + strandat 2437.639 kb on + strandat 2437.723 kb on + strandat 2437.724 kb on - strandat 2437.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,433,263 + ABZR87_RS11480 0.63 +0.5
2,433,263 + ABZR87_RS11480 0.63 -0.4
2,433,263 + ABZR87_RS11480 0.63 +0.2
2,433,264 - ABZR87_RS11480 0.63 +0.0
2,433,264 - ABZR87_RS11480 0.63 -0.7
2,433,704 + ABZR87_RS11480 0.84 +0.1
2,433,752 + ABZR87_RS11480 0.86 -0.0
2,433,752 + ABZR87_RS11480 0.86 +0.2
2,433,752 + ABZR87_RS11480 0.86 -0.7
2,433,753 - ABZR87_RS11480 0.86 -0.5
2,433,753 - ABZR87_RS11480 0.86 +0.3
2,433,753 - ABZR87_RS11480 0.86 -1.5
2,433,753 - ABZR87_RS11480 0.86 +0.0
2,433,754 + ABZR87_RS11480 0.86 -0.5
2,433,810 - ABZR87_RS11480 0.88 -0.3
2,433,810 - ABZR87_RS11480 0.88 -0.4
2,433,839 + ABZR87_RS11480 0.90 +0.2
2,433,839 + ABZR87_RS11480 0.90 +0.4
2,433,840 - ABZR87_RS11480 0.90 -0.0
2,433,866 + -0.6
2,433,866 + +0.2
2,433,866 + -0.0
2,433,866 + -0.1
2,433,866 + +1.9
2,433,866 + -1.0
2,433,867 - +0.5
2,433,867 - -0.1
2,433,867 - -0.2
2,433,867 - +1.1
2,433,867 - +0.1
2,433,867 - -0.0
2,434,190 - +0.1
2,434,229 + +0.2
2,434,230 - -0.3
2,434,230 - +0.4
2,434,312 + -1.0
2,434,312 + +0.0
2,434,312 + -0.3
2,434,313 - +0.1
2,434,313 - -0.4
2,434,717 + ABZR87_RS11485 0.19 -0.6
2,434,718 - ABZR87_RS11485 0.19 -0.6
2,434,718 - ABZR87_RS11485 0.19 -0.4
2,434,978 + ABZR87_RS11485 0.29 -1.0
2,434,978 + ABZR87_RS11485 0.29 -0.3
2,435,191 + ABZR87_RS11485 0.37 +0.9
2,435,191 + ABZR87_RS11485 0.37 +1.7
2,435,192 - ABZR87_RS11485 0.37 +1.1
2,435,192 - ABZR87_RS11485 0.37 -0.3
2,435,297 - ABZR87_RS11485 0.41 -0.4
2,435,297 - ABZR87_RS11485 0.41 -0.8
2,435,297 - ABZR87_RS11485 0.41 -0.3
2,435,365 + ABZR87_RS11485 0.44 +0.2
2,435,366 - ABZR87_RS11485 0.44 -0.4
2,435,366 - ABZR87_RS11485 0.44 -0.2
2,435,427 + ABZR87_RS11485 0.46 +0.3
2,435,428 - ABZR87_RS11485 0.46 -0.9
2,435,428 - ABZR87_RS11485 0.46 -0.3
2,435,428 - ABZR87_RS11485 0.46 -0.4
2,435,437 + ABZR87_RS11485 0.47 +0.3
2,435,590 + ABZR87_RS11485 0.52 +0.3
2,435,591 - ABZR87_RS11485 0.53 +0.0
2,435,591 - ABZR87_RS11485 0.53 -1.1
2,435,735 - ABZR87_RS11485 0.58 -0.2
2,436,031 + ABZR87_RS11485 0.70 -0.7
2,436,196 + ABZR87_RS11485 0.76 -1.4
2,436,196 + ABZR87_RS11485 0.76 -1.2
2,436,196 + ABZR87_RS11485 0.76 -0.7
2,436,197 - ABZR87_RS11485 0.76 +0.7
2,436,220 + ABZR87_RS11485 0.77 -0.7
2,436,250 + ABZR87_RS11485 0.78 -0.6
2,436,251 - ABZR87_RS11485 0.78 +0.8
2,436,827 + -0.4
2,436,827 + +0.5
2,436,828 - -0.1
2,436,838 + +0.2
2,436,839 - -0.4
2,437,242 - -1.6
2,437,242 - +0.5
2,437,242 - +2.2
2,437,536 + +0.1
2,437,536 + -0.1
2,437,537 - +0.7
2,437,537 - -0.3
2,437,537 - +0.5
2,437,537 - -0.6
2,437,555 + +0.1
2,437,555 + +0.3
2,437,597 + +0.7
2,437,597 + -0.2
2,437,597 + -0.2
2,437,598 - +0.4
2,437,598 - +0.0
2,437,598 - -0.1
2,437,639 + +0.5
2,437,639 + +0.2
2,437,723 + +0.8
2,437,724 - +0.2
2,437,724 - +0.4

Or see this region's nucleotide sequence