Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11380

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11375 and ABZR87_RS11380 are separated by 81 nucleotidesABZR87_RS11380 and ABZR87_RS11385 are separated by 141 nucleotidesABZR87_RS11385 and ABZR87_RS11390 are separated by 119 nucleotides ABZR87_RS11375: ABZR87_RS11375 - inorganic phosphate transporter, at 2,411,169 to 2,412,179 _RS11375 ABZR87_RS11380: ABZR87_RS11380 - C40 family peptidase, at 2,412,261 to 2,413,010 _RS11380 ABZR87_RS11385: ABZR87_RS11385 - hypothetical protein, at 2,413,152 to 2,413,577 _RS11385 ABZR87_RS11390: ABZR87_RS11390 - PhoH family protein, at 2,413,697 to 2,415,424 _RS11390 Position (kb) 2412 2413 2414Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2411.314 kb on + strand, within ABZR87_RS11375at 2411.315 kb on - strand, within ABZR87_RS11375at 2411.418 kb on + strand, within ABZR87_RS11375at 2411.418 kb on + strand, within ABZR87_RS11375at 2411.418 kb on + strand, within ABZR87_RS11375at 2411.418 kb on + strand, within ABZR87_RS11375at 2411.418 kb on + strand, within ABZR87_RS11375at 2411.419 kb on - strand, within ABZR87_RS11375at 2411.473 kb on - strand, within ABZR87_RS11375at 2411.475 kb on + strand, within ABZR87_RS11375at 2411.475 kb on + strand, within ABZR87_RS11375at 2411.475 kb on + strand, within ABZR87_RS11375at 2411.476 kb on - strand, within ABZR87_RS11375at 2411.618 kb on + strand, within ABZR87_RS11375at 2411.619 kb on - strand, within ABZR87_RS11375at 2411.619 kb on - strand, within ABZR87_RS11375at 2411.727 kb on + strand, within ABZR87_RS11375at 2411.728 kb on - strand, within ABZR87_RS11375at 2411.728 kb on - strand, within ABZR87_RS11375at 2411.728 kb on - strand, within ABZR87_RS11375at 2411.774 kb on + strand, within ABZR87_RS11375at 2411.813 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.854 kb on - strand, within ABZR87_RS11375at 2411.854 kb on - strand, within ABZR87_RS11375at 2411.854 kb on - strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.021 kb on - strand, within ABZR87_RS11375at 2412.199 kb on + strandat 2412.199 kb on + strandat 2412.199 kb on + strandat 2412.262 kb on + strandat 2412.496 kb on + strand, within ABZR87_RS11380at 2412.496 kb on + strand, within ABZR87_RS11380at 2412.497 kb on - strand, within ABZR87_RS11380at 2412.497 kb on - strand, within ABZR87_RS11380at 2412.586 kb on + strand, within ABZR87_RS11380at 2412.586 kb on + strand, within ABZR87_RS11380at 2412.586 kb on + strand, within ABZR87_RS11380at 2412.586 kb on + strand, within ABZR87_RS11380at 2412.586 kb on + strand, within ABZR87_RS11380at 2412.586 kb on + strand, within ABZR87_RS11380at 2412.586 kb on + strand, within ABZR87_RS11380at 2412.586 kb on + strand, within ABZR87_RS11380at 2412.586 kb on + strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.587 kb on - strand, within ABZR87_RS11380at 2412.736 kb on + strand, within ABZR87_RS11380at 2412.737 kb on - strand, within ABZR87_RS11380at 2412.776 kb on + strand, within ABZR87_RS11380at 2412.777 kb on - strand, within ABZR87_RS11380at 2412.861 kb on - strand, within ABZR87_RS11380at 2412.978 kb on - strandat 2412.997 kb on + strandat 2413.044 kb on + strandat 2413.045 kb on - strandat 2413.045 kb on - strandat 2413.045 kb on - strandat 2413.045 kb on - strandat 2413.045 kb on - strandat 2413.153 kb on + strandat 2413.153 kb on + strandat 2413.153 kb on + strandat 2413.154 kb on - strandat 2413.154 kb on - strandat 2413.154 kb on - strandat 2413.172 kb on + strandat 2413.172 kb on - strandat 2413.173 kb on - strandat 2413.219 kb on + strand, within ABZR87_RS11385at 2413.219 kb on + strand, within ABZR87_RS11385at 2413.219 kb on + strand, within ABZR87_RS11385at 2413.219 kb on + strand, within ABZR87_RS11385at 2413.219 kb on + strand, within ABZR87_RS11385at 2413.219 kb on + strand, within ABZR87_RS11385at 2413.220 kb on - strand, within ABZR87_RS11385at 2413.220 kb on - strand, within ABZR87_RS11385at 2413.235 kb on + strand, within ABZR87_RS11385at 2413.237 kb on + strand, within ABZR87_RS11385at 2413.237 kb on + strand, within ABZR87_RS11385at 2413.237 kb on + strand, within ABZR87_RS11385at 2413.237 kb on + strand, within ABZR87_RS11385at 2413.237 kb on + strand, within ABZR87_RS11385at 2413.237 kb on + strand, within ABZR87_RS11385at 2413.237 kb on + strand, within ABZR87_RS11385at 2413.238 kb on - strand, within ABZR87_RS11385at 2413.238 kb on - strand, within ABZR87_RS11385at 2413.238 kb on - strand, within ABZR87_RS11385at 2413.238 kb on - strand, within ABZR87_RS11385at 2413.238 kb on - strand, within ABZR87_RS11385at 2413.238 kb on - strand, within ABZR87_RS11385at 2413.340 kb on - strand, within ABZR87_RS11385at 2413.340 kb on - strand, within ABZR87_RS11385at 2413.365 kb on + strand, within ABZR87_RS11385at 2413.365 kb on + strand, within ABZR87_RS11385at 2413.365 kb on + strand, within ABZR87_RS11385at 2413.365 kb on + strand, within ABZR87_RS11385at 2413.365 kb on + strand, within ABZR87_RS11385at 2413.366 kb on - strand, within ABZR87_RS11385at 2413.366 kb on - strand, within ABZR87_RS11385at 2413.381 kb on + strand, within ABZR87_RS11385at 2413.381 kb on + strand, within ABZR87_RS11385at 2413.382 kb on - strand, within ABZR87_RS11385at 2413.382 kb on - strand, within ABZR87_RS11385at 2413.382 kb on - strand, within ABZR87_RS11385at 2413.382 kb on - strand, within ABZR87_RS11385at 2413.382 kb on - strand, within ABZR87_RS11385at 2413.441 kb on + strand, within ABZR87_RS11385at 2413.442 kb on - strand, within ABZR87_RS11385at 2413.442 kb on - strand, within ABZR87_RS11385at 2413.442 kb on - strand, within ABZR87_RS11385at 2413.653 kb on + strandat 2413.654 kb on - strandat 2413.658 kb on + strandat 2413.659 kb on - strandat 2413.797 kb on + strandat 2413.797 kb on + strandat 2413.797 kb on + strandat 2413.798 kb on - strandat 2413.827 kb on + strandat 2413.827 kb on + strandat 2413.964 kb on - strand, within ABZR87_RS11390

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,411,314 + ABZR87_RS11375 0.14 +0.5
2,411,315 - ABZR87_RS11375 0.14 +1.1
2,411,418 + ABZR87_RS11375 0.25 +0.4
2,411,418 + ABZR87_RS11375 0.25 +0.8
2,411,418 + ABZR87_RS11375 0.25 -0.3
2,411,418 + ABZR87_RS11375 0.25 -0.7
2,411,418 + ABZR87_RS11375 0.25 +0.5
2,411,419 - ABZR87_RS11375 0.25 +2.0
2,411,473 - ABZR87_RS11375 0.30 +0.2
2,411,475 + ABZR87_RS11375 0.30 +0.5
2,411,475 + ABZR87_RS11375 0.30 +0.9
2,411,475 + ABZR87_RS11375 0.30 +1.3
2,411,476 - ABZR87_RS11375 0.30 +0.5
2,411,618 + ABZR87_RS11375 0.44 +0.5
2,411,619 - ABZR87_RS11375 0.45 +0.2
2,411,619 - ABZR87_RS11375 0.45 +0.1
2,411,727 + ABZR87_RS11375 0.55 +1.5
2,411,728 - ABZR87_RS11375 0.55 +1.0
2,411,728 - ABZR87_RS11375 0.55 +1.1
2,411,728 - ABZR87_RS11375 0.55 +0.3
2,411,774 + ABZR87_RS11375 0.60 +1.1
2,411,813 + ABZR87_RS11375 0.64 +0.2
2,411,853 + ABZR87_RS11375 0.68 +0.7
2,411,853 + ABZR87_RS11375 0.68 +0.3
2,411,853 + ABZR87_RS11375 0.68 +0.4
2,411,853 + ABZR87_RS11375 0.68 +0.9
2,411,853 + ABZR87_RS11375 0.68 +0.7
2,411,853 + ABZR87_RS11375 0.68 +0.4
2,411,854 - ABZR87_RS11375 0.68 +1.0
2,411,854 - ABZR87_RS11375 0.68 +1.7
2,411,854 - ABZR87_RS11375 0.68 +0.6
2,412,020 + ABZR87_RS11375 0.84 +1.1
2,412,020 + ABZR87_RS11375 0.84 +1.0
2,412,020 + ABZR87_RS11375 0.84 +0.6
2,412,020 + ABZR87_RS11375 0.84 -1.1
2,412,020 + ABZR87_RS11375 0.84 +0.9
2,412,020 + ABZR87_RS11375 0.84 +1.0
2,412,020 + ABZR87_RS11375 0.84 +0.9
2,412,021 - ABZR87_RS11375 0.84 -1.3
2,412,199 + -0.2
2,412,199 + +0.7
2,412,199 + +0.1
2,412,262 + +0.1
2,412,496 + ABZR87_RS11380 0.31 -0.2
2,412,496 + ABZR87_RS11380 0.31 +0.1
2,412,497 - ABZR87_RS11380 0.31 +0.1
2,412,497 - ABZR87_RS11380 0.31 -0.7
2,412,586 + ABZR87_RS11380 0.43 +0.1
2,412,586 + ABZR87_RS11380 0.43 +0.8
2,412,586 + ABZR87_RS11380 0.43 -1.0
2,412,586 + ABZR87_RS11380 0.43 +0.1
2,412,586 + ABZR87_RS11380 0.43 -0.1
2,412,586 + ABZR87_RS11380 0.43 -0.6
2,412,586 + ABZR87_RS11380 0.43 +0.1
2,412,586 + ABZR87_RS11380 0.43 +0.2
2,412,586 + ABZR87_RS11380 0.43 -0.3
2,412,587 - ABZR87_RS11380 0.43 -0.3
2,412,587 - ABZR87_RS11380 0.43 +0.1
2,412,587 - ABZR87_RS11380 0.43 -0.3
2,412,587 - ABZR87_RS11380 0.43 -0.1
2,412,587 - ABZR87_RS11380 0.43 -0.9
2,412,587 - ABZR87_RS11380 0.43 -0.3
2,412,587 - ABZR87_RS11380 0.43 +0.4
2,412,587 - ABZR87_RS11380 0.43 -0.0
2,412,587 - ABZR87_RS11380 0.43 +0.8
2,412,587 - ABZR87_RS11380 0.43 -0.3
2,412,587 - ABZR87_RS11380 0.43 -0.5
2,412,587 - ABZR87_RS11380 0.43 +0.0
2,412,587 - ABZR87_RS11380 0.43 +0.3
2,412,587 - ABZR87_RS11380 0.43 -0.2
2,412,587 - ABZR87_RS11380 0.43 +0.5
2,412,587 - ABZR87_RS11380 0.43 +0.2
2,412,587 - ABZR87_RS11380 0.43 -0.4
2,412,736 + ABZR87_RS11380 0.63 -0.0
2,412,737 - ABZR87_RS11380 0.63 +1.7
2,412,776 + ABZR87_RS11380 0.69 -1.1
2,412,777 - ABZR87_RS11380 0.69 +0.4
2,412,861 - ABZR87_RS11380 0.80 +0.1
2,412,978 - +0.6
2,412,997 + +0.3
2,413,044 + -0.5
2,413,045 - -0.6
2,413,045 - +0.1
2,413,045 - +0.3
2,413,045 - +0.1
2,413,045 - +0.5
2,413,153 + +0.9
2,413,153 + +0.2
2,413,153 + -0.2
2,413,154 - -0.0
2,413,154 - +0.3
2,413,154 - -0.7
2,413,172 + -0.1
2,413,172 - -0.3
2,413,173 - +0.3
2,413,219 + ABZR87_RS11385 0.16 -0.3
2,413,219 + ABZR87_RS11385 0.16 +0.3
2,413,219 + ABZR87_RS11385 0.16 +0.1
2,413,219 + ABZR87_RS11385 0.16 +0.1
2,413,219 + ABZR87_RS11385 0.16 -0.8
2,413,219 + ABZR87_RS11385 0.16 -0.7
2,413,220 - ABZR87_RS11385 0.16 -0.3
2,413,220 - ABZR87_RS11385 0.16 -0.0
2,413,235 + ABZR87_RS11385 0.19 +0.1
2,413,237 + ABZR87_RS11385 0.20 -0.1
2,413,237 + ABZR87_RS11385 0.20 +0.4
2,413,237 + ABZR87_RS11385 0.20 +0.0
2,413,237 + ABZR87_RS11385 0.20 -0.4
2,413,237 + ABZR87_RS11385 0.20 -0.9
2,413,237 + ABZR87_RS11385 0.20 -2.4
2,413,237 + ABZR87_RS11385 0.20 -0.3
2,413,238 - ABZR87_RS11385 0.20 -0.2
2,413,238 - ABZR87_RS11385 0.20 +1.2
2,413,238 - ABZR87_RS11385 0.20 +0.1
2,413,238 - ABZR87_RS11385 0.20 -0.4
2,413,238 - ABZR87_RS11385 0.20 +0.5
2,413,238 - ABZR87_RS11385 0.20 +0.3
2,413,340 - ABZR87_RS11385 0.44 +0.1
2,413,340 - ABZR87_RS11385 0.44 +0.6
2,413,365 + ABZR87_RS11385 0.50 +0.5
2,413,365 + ABZR87_RS11385 0.50 -0.6
2,413,365 + ABZR87_RS11385 0.50 -0.2
2,413,365 + ABZR87_RS11385 0.50 -0.0
2,413,365 + ABZR87_RS11385 0.50 -1.6
2,413,366 - ABZR87_RS11385 0.50 -0.7
2,413,366 - ABZR87_RS11385 0.50 -0.4
2,413,381 + ABZR87_RS11385 0.54 +0.8
2,413,381 + ABZR87_RS11385 0.54 +0.6
2,413,382 - ABZR87_RS11385 0.54 +1.3
2,413,382 - ABZR87_RS11385 0.54 -0.1
2,413,382 - ABZR87_RS11385 0.54 +0.6
2,413,382 - ABZR87_RS11385 0.54 -0.0
2,413,382 - ABZR87_RS11385 0.54 +0.4
2,413,441 + ABZR87_RS11385 0.68 +0.2
2,413,442 - ABZR87_RS11385 0.68 +0.2
2,413,442 - ABZR87_RS11385 0.68 +0.5
2,413,442 - ABZR87_RS11385 0.68 -0.7
2,413,653 + -0.5
2,413,654 - +1.3
2,413,658 + -2.5
2,413,659 - +0.4
2,413,797 + -1.9
2,413,797 + -1.3
2,413,797 + -3.8
2,413,798 - -2.1
2,413,827 + -4.9
2,413,827 + -1.9
2,413,964 - ABZR87_RS11390 0.15 -3.2

Or see this region's nucleotide sequence