Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11195 and ABZR87_RS11200 are separated by 207 nucleotides ABZR87_RS11200 and ABZR87_RS11205 overlap by 4 nucleotides ABZR87_RS11205 and ABZR87_RS11210 are separated by 62 nucleotides
ABZR87_RS11195: ABZR87_RS11195 - pseudouridine synthase, at 2,374,494 to 2,376,275
_RS11195
ABZR87_RS11200: ABZR87_RS11200 - ribosome maturation factor RimP, at 2,376,483 to 2,376,971
_RS11200
ABZR87_RS11205: ABZR87_RS11205 - transcription termination factor NusA, at 2,376,968 to 2,378,443
_RS11205
ABZR87_RS11210: ABZR87_RS11210 - translation initiation factor IF-2, at 2,378,506 to 2,381,400
_RS11210
Position (kb)
2376
2377
2378
2379 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2375.981 kb on + strand, within ABZR87_RS11195 at 2376.072 kb on + strand, within ABZR87_RS11195 at 2376.072 kb on + strand, within ABZR87_RS11195 at 2376.072 kb on + strand, within ABZR87_RS11195 at 2376.072 kb on + strand, within ABZR87_RS11195 at 2376.072 kb on + strand, within ABZR87_RS11195 at 2376.072 kb on + strand, within ABZR87_RS11195 at 2376.073 kb on - strand, within ABZR87_RS11195 at 2376.073 kb on - strand, within ABZR87_RS11195 at 2376.073 kb on - strand, within ABZR87_RS11195 at 2376.073 kb on - strand, within ABZR87_RS11195 at 2376.365 kb on + strand at 2376.576 kb on + strand, within ABZR87_RS11200 at 2378.450 kb on + strand at 2378.465 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 2,375,981 + ABZR87_RS11195 0.83 -3.5 2,376,072 + ABZR87_RS11195 0.89 -3.3 2,376,072 + ABZR87_RS11195 0.89 -3.7 2,376,072 + ABZR87_RS11195 0.89 -2.5 2,376,072 + ABZR87_RS11195 0.89 -4.1 2,376,072 + ABZR87_RS11195 0.89 -3.9 2,376,072 + ABZR87_RS11195 0.89 -3.4 2,376,073 - ABZR87_RS11195 0.89 -5.1 2,376,073 - ABZR87_RS11195 0.89 -3.5 2,376,073 - ABZR87_RS11195 0.89 -3.0 2,376,073 - ABZR87_RS11195 0.89 -2.8 2,376,365 + +1.3 2,376,576 + ABZR87_RS11200 0.19 -0.4 2,378,450 + -0.3 2,378,465 + -0.7
Or see this region's nucleotide sequence