Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11205

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11195 and ABZR87_RS11200 are separated by 207 nucleotidesABZR87_RS11200 and ABZR87_RS11205 overlap by 4 nucleotidesABZR87_RS11205 and ABZR87_RS11210 are separated by 62 nucleotides ABZR87_RS11195: ABZR87_RS11195 - pseudouridine synthase, at 2,374,494 to 2,376,275 _RS11195 ABZR87_RS11200: ABZR87_RS11200 - ribosome maturation factor RimP, at 2,376,483 to 2,376,971 _RS11200 ABZR87_RS11205: ABZR87_RS11205 - transcription termination factor NusA, at 2,376,968 to 2,378,443 _RS11205 ABZR87_RS11210: ABZR87_RS11210 - translation initiation factor IF-2, at 2,378,506 to 2,381,400 _RS11210 Position (kb) 2376 2377 2378 2379Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2375.981 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.072 kb on + strand, within ABZR87_RS11195at 2376.073 kb on - strand, within ABZR87_RS11195at 2376.073 kb on - strand, within ABZR87_RS11195at 2376.073 kb on - strand, within ABZR87_RS11195at 2376.073 kb on - strand, within ABZR87_RS11195at 2376.365 kb on + strandat 2376.576 kb on + strand, within ABZR87_RS11200at 2378.450 kb on + strandat 2378.465 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,375,981 + ABZR87_RS11195 0.83 -3.5
2,376,072 + ABZR87_RS11195 0.89 -3.3
2,376,072 + ABZR87_RS11195 0.89 -3.7
2,376,072 + ABZR87_RS11195 0.89 -2.5
2,376,072 + ABZR87_RS11195 0.89 -4.1
2,376,072 + ABZR87_RS11195 0.89 -3.9
2,376,072 + ABZR87_RS11195 0.89 -3.4
2,376,073 - ABZR87_RS11195 0.89 -5.1
2,376,073 - ABZR87_RS11195 0.89 -3.5
2,376,073 - ABZR87_RS11195 0.89 -3.0
2,376,073 - ABZR87_RS11195 0.89 -2.8
2,376,365 + +1.3
2,376,576 + ABZR87_RS11200 0.19 -0.4
2,378,450 + -0.3
2,378,465 + -0.7

Or see this region's nucleotide sequence