Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10400

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10395 and ABZR87_RS10400 are separated by 22 nucleotidesABZR87_RS10400 and ABZR87_RS10405 are separated by 71 nucleotides ABZR87_RS10395: ABZR87_RS10395 - single-stranded-DNA-specific exonuclease RecJ, at 2,201,635 to 2,203,329 _RS10395 ABZR87_RS10400: ABZR87_RS10400 - hypothetical protein, at 2,203,352 to 2,204,443 _RS10400 ABZR87_RS10405: ABZR87_RS10405 - lipoprotein-releasing ABC transporter permease subunit, at 2,204,515 to 2,205,765 _RS10405 Position (kb) 2203 2204 2205Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2202.404 kb on + strand, within ABZR87_RS10395at 2202.404 kb on + strand, within ABZR87_RS10395at 2202.539 kb on - strand, within ABZR87_RS10395at 2202.743 kb on + strand, within ABZR87_RS10395at 2202.743 kb on + strand, within ABZR87_RS10395at 2202.744 kb on - strand, within ABZR87_RS10395at 2202.744 kb on - strand, within ABZR87_RS10395at 2202.744 kb on - strand, within ABZR87_RS10395at 2202.744 kb on - strand, within ABZR87_RS10395at 2202.873 kb on + strand, within ABZR87_RS10395at 2202.996 kb on - strand, within ABZR87_RS10395at 2203.019 kb on + strand, within ABZR87_RS10395at 2203.019 kb on + strand, within ABZR87_RS10395at 2203.020 kb on - strand, within ABZR87_RS10395at 2203.020 kb on - strand, within ABZR87_RS10395at 2203.020 kb on - strand, within ABZR87_RS10395at 2203.020 kb on - strand, within ABZR87_RS10395at 2203.020 kb on - strand, within ABZR87_RS10395at 2203.060 kb on + strand, within ABZR87_RS10395at 2203.091 kb on + strand, within ABZR87_RS10395at 2203.143 kb on - strand, within ABZR87_RS10395at 2203.618 kb on - strand, within ABZR87_RS10400at 2203.721 kb on + strand, within ABZR87_RS10400at 2203.722 kb on - strand, within ABZR87_RS10400at 2203.863 kb on + strand, within ABZR87_RS10400at 2203.864 kb on - strand, within ABZR87_RS10400at 2204.004 kb on + strand, within ABZR87_RS10400at 2204.005 kb on - strand, within ABZR87_RS10400at 2204.217 kb on + strand, within ABZR87_RS10400at 2204.295 kb on + strand, within ABZR87_RS10400at 2204.296 kb on - strand, within ABZR87_RS10400at 2204.457 kb on + strandat 2204.457 kb on + strandat 2204.457 kb on + strandat 2204.458 kb on - strandat 2204.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,202,404 + ABZR87_RS10395 0.45 -0.8
2,202,404 + ABZR87_RS10395 0.45 -0.3
2,202,539 - ABZR87_RS10395 0.53 -0.1
2,202,743 + ABZR87_RS10395 0.65 -2.3
2,202,743 + ABZR87_RS10395 0.65 -0.7
2,202,744 - ABZR87_RS10395 0.65 -0.8
2,202,744 - ABZR87_RS10395 0.65 -1.3
2,202,744 - ABZR87_RS10395 0.65 -0.7
2,202,744 - ABZR87_RS10395 0.65 -1.2
2,202,873 + ABZR87_RS10395 0.73 -1.4
2,202,996 - ABZR87_RS10395 0.80 -1.2
2,203,019 + ABZR87_RS10395 0.82 -1.0
2,203,019 + ABZR87_RS10395 0.82 -0.7
2,203,020 - ABZR87_RS10395 0.82 +0.4
2,203,020 - ABZR87_RS10395 0.82 +1.1
2,203,020 - ABZR87_RS10395 0.82 -2.0
2,203,020 - ABZR87_RS10395 0.82 -1.9
2,203,020 - ABZR87_RS10395 0.82 -1.8
2,203,060 + ABZR87_RS10395 0.84 -1.5
2,203,091 + ABZR87_RS10395 0.86 -1.5
2,203,143 - ABZR87_RS10395 0.89 -1.5
2,203,618 - ABZR87_RS10400 0.24 -0.8
2,203,721 + ABZR87_RS10400 0.34 -2.8
2,203,722 - ABZR87_RS10400 0.34 -4.1
2,203,863 + ABZR87_RS10400 0.47 -1.8
2,203,864 - ABZR87_RS10400 0.47 -1.5
2,204,004 + ABZR87_RS10400 0.60 -1.5
2,204,005 - ABZR87_RS10400 0.60 -1.8
2,204,217 + ABZR87_RS10400 0.79 -3.1
2,204,295 + ABZR87_RS10400 0.86 -2.0
2,204,296 - ABZR87_RS10400 0.86 +0.2
2,204,457 + -0.1
2,204,457 + -0.4
2,204,457 + +0.2
2,204,458 - +0.1
2,204,458 - -0.2

Or see this region's nucleotide sequence