Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10160

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10155 and ABZR87_RS10160 are separated by 54 nucleotidesABZR87_RS10160 and ABZR87_RS10165 are separated by 335 nucleotides ABZR87_RS10155: ABZR87_RS10155 - beta-ketoacyl-ACP synthase II, at 2,155,582 to 2,156,814 _RS10155 ABZR87_RS10160: ABZR87_RS10160 - hypothetical protein, at 2,156,869 to 2,157,078 _RS10160 ABZR87_RS10165: ABZR87_RS10165 - RNA polymerase sigma factor RpoE, at 2,157,414 to 2,158,013 _RS10165 Position (kb) 2156 2157 2158Strain fitness (log2 ratio) -2 -1 0 1 2at 2156.817 kb on + strandat 2156.830 kb on + strandat 2156.830 kb on + strandat 2156.830 kb on + strandat 2156.831 kb on - strandat 2156.831 kb on - strandat 2156.831 kb on - strandat 2156.955 kb on + strand, within ABZR87_RS10160at 2156.956 kb on - strand, within ABZR87_RS10160at 2157.034 kb on + strand, within ABZR87_RS10160at 2157.034 kb on + strand, within ABZR87_RS10160at 2157.034 kb on + strand, within ABZR87_RS10160at 2157.034 kb on + strand, within ABZR87_RS10160at 2157.035 kb on - strand, within ABZR87_RS10160at 2157.174 kb on + strandat 2157.174 kb on + strandat 2157.175 kb on - strandat 2157.175 kb on - strandat 2157.175 kb on - strandat 2157.175 kb on - strandat 2157.282 kb on + strandat 2157.282 kb on + strandat 2157.283 kb on - strandat 2157.283 kb on - strandat 2157.283 kb on - strandat 2157.289 kb on + strandat 2157.290 kb on - strandat 2157.290 kb on - strandat 2157.290 kb on - strandat 2157.290 kb on - strandat 2157.290 kb on - strandat 2157.350 kb on + strandat 2157.351 kb on - strandat 2157.351 kb on - strandat 2157.359 kb on + strandat 2157.359 kb on + strandat 2157.360 kb on - strandat 2157.360 kb on - strandat 2157.393 kb on + strandat 2157.467 kb on + strandat 2157.467 kb on + strandat 2157.498 kb on + strand, within ABZR87_RS10165at 2157.498 kb on + strand, within ABZR87_RS10165at 2157.498 kb on + strand, within ABZR87_RS10165at 2157.498 kb on + strand, within ABZR87_RS10165at 2157.499 kb on - strand, within ABZR87_RS10165at 2157.578 kb on + strand, within ABZR87_RS10165at 2157.578 kb on + strand, within ABZR87_RS10165at 2157.579 kb on - strand, within ABZR87_RS10165at 2157.579 kb on - strand, within ABZR87_RS10165at 2157.579 kb on - strand, within ABZR87_RS10165at 2157.579 kb on - strand, within ABZR87_RS10165at 2157.598 kb on + strand, within ABZR87_RS10165at 2157.627 kb on + strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.630 kb on - strand, within ABZR87_RS10165at 2157.630 kb on - strand, within ABZR87_RS10165at 2157.630 kb on - strand, within ABZR87_RS10165at 2157.630 kb on - strand, within ABZR87_RS10165at 2157.630 kb on - strand, within ABZR87_RS10165at 2157.640 kb on - strand, within ABZR87_RS10165at 2157.656 kb on + strand, within ABZR87_RS10165at 2157.657 kb on - strand, within ABZR87_RS10165at 2157.669 kb on + strand, within ABZR87_RS10165at 2157.669 kb on + strand, within ABZR87_RS10165at 2157.751 kb on + strand, within ABZR87_RS10165at 2157.751 kb on + strand, within ABZR87_RS10165at 2157.751 kb on + strand, within ABZR87_RS10165at 2157.751 kb on + strand, within ABZR87_RS10165at 2157.752 kb on - strand, within ABZR87_RS10165at 2157.754 kb on + strand, within ABZR87_RS10165at 2157.754 kb on + strand, within ABZR87_RS10165at 2157.767 kb on + strand, within ABZR87_RS10165at 2157.767 kb on + strand, within ABZR87_RS10165at 2157.768 kb on - strand, within ABZR87_RS10165at 2157.768 kb on - strand, within ABZR87_RS10165at 2157.768 kb on - strand, within ABZR87_RS10165at 2157.885 kb on + strand, within ABZR87_RS10165at 2157.885 kb on + strand, within ABZR87_RS10165at 2157.885 kb on + strand, within ABZR87_RS10165at 2157.885 kb on + strand, within ABZR87_RS10165at 2157.886 kb on - strand, within ABZR87_RS10165at 2157.886 kb on - strand, within ABZR87_RS10165at 2157.886 kb on - strand, within ABZR87_RS10165at 2157.886 kb on - strand, within ABZR87_RS10165

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,156,817 + +0.8
2,156,830 + +0.2
2,156,830 + +0.8
2,156,830 + -0.8
2,156,831 - +0.2
2,156,831 - +0.5
2,156,831 - +1.1
2,156,955 + ABZR87_RS10160 0.41 +0.6
2,156,956 - ABZR87_RS10160 0.41 -0.9
2,157,034 + ABZR87_RS10160 0.79 +0.6
2,157,034 + ABZR87_RS10160 0.79 -0.3
2,157,034 + ABZR87_RS10160 0.79 +0.2
2,157,034 + ABZR87_RS10160 0.79 +0.1
2,157,035 - ABZR87_RS10160 0.79 -1.0
2,157,174 + -0.2
2,157,174 + -0.4
2,157,175 - -1.5
2,157,175 - -1.4
2,157,175 - +0.1
2,157,175 - -0.6
2,157,282 + -0.8
2,157,282 + +1.0
2,157,283 - -1.2
2,157,283 - -2.1
2,157,283 - -1.6
2,157,289 + -0.3
2,157,290 - +0.5
2,157,290 - -1.1
2,157,290 - -0.4
2,157,290 - -1.0
2,157,290 - -1.2
2,157,350 + -0.2
2,157,351 - -0.9
2,157,351 - -1.3
2,157,359 + -0.9
2,157,359 + -1.3
2,157,360 - +0.0
2,157,360 - -0.2
2,157,393 + +0.3
2,157,467 + +0.6
2,157,467 + +0.7
2,157,498 + ABZR87_RS10165 0.14 +1.0
2,157,498 + ABZR87_RS10165 0.14 +0.3
2,157,498 + ABZR87_RS10165 0.14 +0.8
2,157,498 + ABZR87_RS10165 0.14 -0.2
2,157,499 - ABZR87_RS10165 0.14 +0.7
2,157,578 + ABZR87_RS10165 0.27 -0.2
2,157,578 + ABZR87_RS10165 0.27 +0.6
2,157,579 - ABZR87_RS10165 0.28 +1.1
2,157,579 - ABZR87_RS10165 0.28 +0.8
2,157,579 - ABZR87_RS10165 0.28 -0.1
2,157,579 - ABZR87_RS10165 0.28 +1.6
2,157,598 + ABZR87_RS10165 0.31 +0.8
2,157,627 + ABZR87_RS10165 0.35 +0.1
2,157,628 - ABZR87_RS10165 0.36 +0.8
2,157,628 - ABZR87_RS10165 0.36 +0.2
2,157,628 - ABZR87_RS10165 0.36 +1.7
2,157,628 - ABZR87_RS10165 0.36 +1.8
2,157,628 - ABZR87_RS10165 0.36 +1.8
2,157,628 - ABZR87_RS10165 0.36 +1.3
2,157,629 + ABZR87_RS10165 0.36 -0.3
2,157,629 + ABZR87_RS10165 0.36 +1.2
2,157,629 + ABZR87_RS10165 0.36 -0.1
2,157,629 + ABZR87_RS10165 0.36 +0.9
2,157,629 + ABZR87_RS10165 0.36 +0.7
2,157,629 + ABZR87_RS10165 0.36 +0.7
2,157,629 + ABZR87_RS10165 0.36 +0.7
2,157,630 - ABZR87_RS10165 0.36 +1.6
2,157,630 - ABZR87_RS10165 0.36 +2.1
2,157,630 - ABZR87_RS10165 0.36 +0.5
2,157,630 - ABZR87_RS10165 0.36 +0.2
2,157,630 - ABZR87_RS10165 0.36 +1.5
2,157,640 - ABZR87_RS10165 0.38 -0.1
2,157,656 + ABZR87_RS10165 0.40 +0.0
2,157,657 - ABZR87_RS10165 0.41 +1.2
2,157,669 + ABZR87_RS10165 0.42 +0.8
2,157,669 + ABZR87_RS10165 0.42 +0.4
2,157,751 + ABZR87_RS10165 0.56 +0.0
2,157,751 + ABZR87_RS10165 0.56 +0.6
2,157,751 + ABZR87_RS10165 0.56 -0.0
2,157,751 + ABZR87_RS10165 0.56 -1.7
2,157,752 - ABZR87_RS10165 0.56 -1.2
2,157,754 + ABZR87_RS10165 0.57 +0.5
2,157,754 + ABZR87_RS10165 0.57 +0.9
2,157,767 + ABZR87_RS10165 0.59 -0.8
2,157,767 + ABZR87_RS10165 0.59 +0.1
2,157,768 - ABZR87_RS10165 0.59 +1.4
2,157,768 - ABZR87_RS10165 0.59 +1.0
2,157,768 - ABZR87_RS10165 0.59 +2.2
2,157,885 + ABZR87_RS10165 0.79 +0.2
2,157,885 + ABZR87_RS10165 0.79 -0.6
2,157,885 + ABZR87_RS10165 0.79 +0.6
2,157,885 + ABZR87_RS10165 0.79 +1.1
2,157,886 - ABZR87_RS10165 0.79 +1.4
2,157,886 - ABZR87_RS10165 0.79 +0.5
2,157,886 - ABZR87_RS10165 0.79 +1.1
2,157,886 - ABZR87_RS10165 0.79 +0.6

Or see this region's nucleotide sequence