Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09490 and ABZR87_RS09495 are separated by 64 nucleotides ABZR87_RS09495 and ABZR87_RS09500 are separated by 38 nucleotides ABZR87_RS09500 and ABZR87_RS09505 are separated by 18 nucleotides
ABZR87_RS09490: ABZR87_RS09490 - lipopolysaccharide assembly protein LapB, at 2,015,300 to 2,016,574
_RS09490
ABZR87_RS09495: ABZR87_RS09495 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 2,016,639 to 2,018,003
_RS09495
ABZR87_RS09500: ABZR87_RS09500 - D-glycero-beta-D-manno-heptose-7-phosphate kinase, at 2,018,042 to 2,018,974
_RS09500
ABZR87_RS09505: ABZR87_RS09505 - ADP-glyceromanno-heptose 6-epimerase, at 2,018,993 to 2,019,988
_RS09505
Position (kb)
2016
2017
2018
2019 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2016.521 kb on + strand at 2016.521 kb on + strand at 2016.521 kb on + strand at 2016.521 kb on + strand at 2016.521 kb on + strand at 2016.521 kb on + strand at 2016.521 kb on + strand at 2016.521 kb on + strand at 2016.521 kb on + strand at 2016.572 kb on + strand at 2016.572 kb on + strand at 2016.572 kb on + strand at 2016.638 kb on + strand at 2018.001 kb on + strand at 2018.002 kb on - strand at 2018.002 kb on - strand at 2018.498 kb on + strand, within ABZR87_RS09500 at 2018.592 kb on - strand, within ABZR87_RS09500 at 2018.601 kb on - strand, within ABZR87_RS09500 at 2018.601 kb on - strand, within ABZR87_RS09500 at 2018.762 kb on + strand, within ABZR87_RS09500 at 2018.762 kb on + strand, within ABZR87_RS09500 at 2018.763 kb on - strand, within ABZR87_RS09500
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 2,016,521 + +0.1 2,016,521 + -0.7 2,016,521 + -0.1 2,016,521 + -2.2 2,016,521 + -2.7 2,016,521 + -0.7 2,016,521 + -1.9 2,016,521 + -1.7 2,016,521 + -2.5 2,016,572 + +0.3 2,016,572 + -0.6 2,016,572 + +0.7 2,016,638 + +1.3 2,018,001 + -1.2 2,018,002 - +0.3 2,018,002 - +0.2 2,018,498 + ABZR87_RS09500 0.49 -2.5 2,018,592 - ABZR87_RS09500 0.59 -4.0 2,018,601 - ABZR87_RS09500 0.60 -1.9 2,018,601 - ABZR87_RS09500 0.60 -2.7 2,018,762 + ABZR87_RS09500 0.77 -3.0 2,018,762 + ABZR87_RS09500 0.77 -0.5 2,018,763 - ABZR87_RS09500 0.77 -2.5
Or see this region's nucleotide sequence