Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09475 and ABZR87_RS09480 are separated by 45 nucleotides ABZR87_RS09480 and ABZR87_RS09485 are separated by 194 nucleotides ABZR87_RS09485 and ABZR87_RS09490 are separated by 3 nucleotides
ABZR87_RS09475: ABZR87_RS09475 - 30S ribosomal protein S1, at 2,012,616 to 2,014,304
_RS09475
ABZR87_RS09480: ABZR87_RS09480 - integration host factor subunit beta, at 2,014,350 to 2,014,778
_RS09480
ABZR87_RS09485: ABZR87_RS09485 - lipopolysaccharide assembly protein LapA domain-containing protein, at 2,014,973 to 2,015,296
_RS09485
ABZR87_RS09490: ABZR87_RS09490 - lipopolysaccharide assembly protein LapB, at 2,015,300 to 2,016,574
_RS09490
Position (kb)
2014
2015
2016 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2014.302 kb on + strand at 2014.303 kb on - strand at 2014.324 kb on + strand at 2014.693 kb on + strand, within ABZR87_RS09480 at 2014.744 kb on + strand at 2014.796 kb on + strand at 2014.796 kb on + strand at 2014.796 kb on + strand at 2014.797 kb on - strand at 2014.797 kb on - strand at 2014.797 kb on - strand at 2014.797 kb on - strand at 2014.832 kb on + strand at 2014.863 kb on + strand at 2014.881 kb on + strand at 2014.882 kb on - strand at 2014.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 2,014,302 + -1.6 2,014,303 - -0.6 2,014,324 + -2.6 2,014,693 + ABZR87_RS09480 0.80 -0.1 2,014,744 + +0.9 2,014,796 + -0.4 2,014,796 + -0.2 2,014,796 + -0.1 2,014,797 - +1.9 2,014,797 - -0.1 2,014,797 - +1.0 2,014,797 - +0.5 2,014,832 + -1.0 2,014,863 + -0.4 2,014,881 + -0.9 2,014,882 - +2.3 2,014,892 + -0.6
Or see this region's nucleotide sequence