Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08125

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08120 and ABZR87_RS08125 are separated by 156 nucleotidesABZR87_RS08125 and ABZR87_RS08130 are separated by 211 nucleotidesABZR87_RS08130 and ABZR87_RS08135 are separated by 19 nucleotides ABZR87_RS08120: ABZR87_RS08120 - Ku protein, at 1,725,248 to 1,726,162 _RS08120 ABZR87_RS08125: ABZR87_RS08125 - MFS transporter, at 1,726,319 to 1,727,503 _RS08125 ABZR87_RS08130: ABZR87_RS08130 - hypothetical protein, at 1,727,715 to 1,728,104 _RS08130 ABZR87_RS08135: ABZR87_RS08135 - hypothetical protein, at 1,728,124 to 1,728,939 _RS08135 Position (kb) 1726 1727 1728Strain fitness (log2 ratio) -2 -1 0 1 2at 1725.358 kb on + strand, within ABZR87_RS08120at 1725.528 kb on + strand, within ABZR87_RS08120at 1725.676 kb on + strand, within ABZR87_RS08120at 1725.676 kb on + strand, within ABZR87_RS08120at 1725.676 kb on + strand, within ABZR87_RS08120at 1725.676 kb on + strand, within ABZR87_RS08120at 1725.677 kb on - strand, within ABZR87_RS08120at 1725.677 kb on - strand, within ABZR87_RS08120at 1725.795 kb on + strand, within ABZR87_RS08120at 1725.839 kb on - strand, within ABZR87_RS08120at 1725.847 kb on - strand, within ABZR87_RS08120at 1725.847 kb on - strand, within ABZR87_RS08120at 1725.872 kb on + strand, within ABZR87_RS08120at 1725.872 kb on + strand, within ABZR87_RS08120at 1725.872 kb on + strand, within ABZR87_RS08120at 1725.873 kb on - strand, within ABZR87_RS08120at 1725.873 kb on - strand, within ABZR87_RS08120at 1725.873 kb on - strand, within ABZR87_RS08120at 1725.948 kb on + strand, within ABZR87_RS08120at 1725.948 kb on + strand, within ABZR87_RS08120at 1725.948 kb on + strand, within ABZR87_RS08120at 1725.949 kb on - strand, within ABZR87_RS08120at 1725.949 kb on - strand, within ABZR87_RS08120at 1725.949 kb on - strand, within ABZR87_RS08120at 1725.963 kb on + strand, within ABZR87_RS08120at 1725.963 kb on + strand, within ABZR87_RS08120at 1725.969 kb on + strand, within ABZR87_RS08120at 1725.969 kb on + strand, within ABZR87_RS08120at 1725.970 kb on - strand, within ABZR87_RS08120at 1726.114 kb on + strandat 1726.237 kb on + strandat 1726.237 kb on + strandat 1726.237 kb on + strandat 1726.238 kb on - strandat 1726.238 kb on - strandat 1726.238 kb on - strandat 1726.238 kb on - strandat 1726.238 kb on - strandat 1726.238 kb on - strandat 1726.259 kb on + strandat 1726.260 kb on - strandat 1726.260 kb on - strandat 1726.331 kb on + strandat 1726.332 kb on - strandat 1726.640 kb on + strand, within ABZR87_RS08125at 1726.640 kb on + strand, within ABZR87_RS08125at 1727.015 kb on + strand, within ABZR87_RS08125at 1727.015 kb on + strand, within ABZR87_RS08125at 1727.015 kb on + strand, within ABZR87_RS08125at 1727.015 kb on + strand, within ABZR87_RS08125at 1727.016 kb on - strand, within ABZR87_RS08125at 1727.033 kb on + strand, within ABZR87_RS08125at 1727.033 kb on + strand, within ABZR87_RS08125at 1727.033 kb on + strand, within ABZR87_RS08125at 1727.033 kb on + strand, within ABZR87_RS08125at 1727.034 kb on - strand, within ABZR87_RS08125at 1727.034 kb on - strand, within ABZR87_RS08125at 1727.034 kb on - strand, within ABZR87_RS08125at 1727.034 kb on - strand, within ABZR87_RS08125at 1727.034 kb on - strand, within ABZR87_RS08125at 1727.034 kb on - strand, within ABZR87_RS08125at 1727.034 kb on - strand, within ABZR87_RS08125at 1727.082 kb on - strand, within ABZR87_RS08125at 1727.293 kb on + strand, within ABZR87_RS08125at 1727.357 kb on + strand, within ABZR87_RS08125at 1727.357 kb on + strand, within ABZR87_RS08125at 1727.358 kb on - strand, within ABZR87_RS08125at 1727.579 kb on + strandat 1727.584 kb on + strandat 1727.584 kb on + strandat 1727.584 kb on + strandat 1727.584 kb on + strandat 1727.585 kb on - strandat 1727.585 kb on - strandat 1727.585 kb on - strandat 1727.698 kb on + strandat 1727.721 kb on + strandat 1727.722 kb on - strandat 1727.722 kb on - strandat 1727.732 kb on + strandat 1727.732 kb on + strandat 1727.733 kb on - strandat 1727.733 kb on - strandat 1727.733 kb on - strandat 1727.814 kb on + strand, within ABZR87_RS08130at 1727.816 kb on + strand, within ABZR87_RS08130at 1727.816 kb on + strand, within ABZR87_RS08130at 1727.817 kb on - strand, within ABZR87_RS08130at 1727.840 kb on + strand, within ABZR87_RS08130at 1727.841 kb on - strand, within ABZR87_RS08130at 1727.853 kb on + strand, within ABZR87_RS08130at 1727.892 kb on + strand, within ABZR87_RS08130at 1727.892 kb on + strand, within ABZR87_RS08130at 1727.976 kb on + strand, within ABZR87_RS08130at 1727.976 kb on + strand, within ABZR87_RS08130at 1727.976 kb on + strand, within ABZR87_RS08130at 1727.976 kb on + strand, within ABZR87_RS08130at 1727.977 kb on - strand, within ABZR87_RS08130at 1727.985 kb on + strand, within ABZR87_RS08130at 1727.985 kb on + strand, within ABZR87_RS08130at 1727.985 kb on + strand, within ABZR87_RS08130at 1727.985 kb on + strand, within ABZR87_RS08130at 1727.985 kb on + strand, within ABZR87_RS08130at 1727.986 kb on - strand, within ABZR87_RS08130at 1727.986 kb on - strand, within ABZR87_RS08130at 1727.986 kb on - strand, within ABZR87_RS08130at 1727.986 kb on - strand, within ABZR87_RS08130at 1727.986 kb on - strand, within ABZR87_RS08130at 1728.024 kb on + strand, within ABZR87_RS08130at 1728.024 kb on + strand, within ABZR87_RS08130at 1728.024 kb on + strand, within ABZR87_RS08130at 1728.025 kb on - strand, within ABZR87_RS08130at 1728.025 kb on - strand, within ABZR87_RS08130at 1728.025 kb on - strand, within ABZR87_RS08130at 1728.026 kb on + strand, within ABZR87_RS08130at 1728.026 kb on + strand, within ABZR87_RS08130at 1728.027 kb on - strand, within ABZR87_RS08130at 1728.063 kb on + strand, within ABZR87_RS08130at 1728.102 kb on + strandat 1728.102 kb on + strandat 1728.102 kb on + strandat 1728.102 kb on + strandat 1728.103 kb on - strandat 1728.103 kb on - strandat 1728.103 kb on - strandat 1728.210 kb on - strand, within ABZR87_RS08135at 1728.368 kb on - strand, within ABZR87_RS08135at 1728.368 kb on - strand, within ABZR87_RS08135at 1728.486 kb on - strand, within ABZR87_RS08135

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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1,725,358 + ABZR87_RS08120 0.12 +0.4
1,725,528 + ABZR87_RS08120 0.31 +0.9
1,725,676 + ABZR87_RS08120 0.47 -0.2
1,725,676 + ABZR87_RS08120 0.47 -0.6
1,725,676 + ABZR87_RS08120 0.47 -0.2
1,725,676 + ABZR87_RS08120 0.47 +0.7
1,725,677 - ABZR87_RS08120 0.47 +1.1
1,725,677 - ABZR87_RS08120 0.47 -0.6
1,725,795 + ABZR87_RS08120 0.60 +0.8
1,725,839 - ABZR87_RS08120 0.65 +1.2
1,725,847 - ABZR87_RS08120 0.65 +0.1
1,725,847 - ABZR87_RS08120 0.65 +0.2
1,725,872 + ABZR87_RS08120 0.68 +0.3
1,725,872 + ABZR87_RS08120 0.68 +1.0
1,725,872 + ABZR87_RS08120 0.68 +1.1
1,725,873 - ABZR87_RS08120 0.68 +0.6
1,725,873 - ABZR87_RS08120 0.68 +0.4
1,725,873 - ABZR87_RS08120 0.68 +0.8
1,725,948 + ABZR87_RS08120 0.77 -0.2
1,725,948 + ABZR87_RS08120 0.77 -0.5
1,725,948 + ABZR87_RS08120 0.77 +0.1
1,725,949 - ABZR87_RS08120 0.77 -0.6
1,725,949 - ABZR87_RS08120 0.77 -0.9
1,725,949 - ABZR87_RS08120 0.77 +1.8
1,725,963 + ABZR87_RS08120 0.78 -0.5
1,725,963 + ABZR87_RS08120 0.78 +0.1
1,725,969 + ABZR87_RS08120 0.79 +0.1
1,725,969 + ABZR87_RS08120 0.79 +0.0
1,725,970 - ABZR87_RS08120 0.79 -0.1
1,726,114 + +1.6
1,726,237 + +0.5
1,726,237 + +0.1
1,726,237 + -0.5
1,726,238 - -0.2
1,726,238 - +0.2
1,726,238 - -0.1
1,726,238 - +0.4
1,726,238 - +0.1
1,726,238 - +0.3
1,726,259 + -0.3
1,726,260 - -0.6
1,726,260 - +0.6
1,726,331 + +0.6
1,726,332 - -0.6
1,726,640 + ABZR87_RS08125 0.27 +0.2
1,726,640 + ABZR87_RS08125 0.27 +0.4
1,727,015 + ABZR87_RS08125 0.59 -0.4
1,727,015 + ABZR87_RS08125 0.59 -0.3
1,727,015 + ABZR87_RS08125 0.59 -0.0
1,727,015 + ABZR87_RS08125 0.59 +0.2
1,727,016 - ABZR87_RS08125 0.59 +0.2
1,727,033 + ABZR87_RS08125 0.60 +0.3
1,727,033 + ABZR87_RS08125 0.60 +0.0
1,727,033 + ABZR87_RS08125 0.60 -0.1
1,727,033 + ABZR87_RS08125 0.60 -0.3
1,727,034 - ABZR87_RS08125 0.60 +1.0
1,727,034 - ABZR87_RS08125 0.60 -1.1
1,727,034 - ABZR87_RS08125 0.60 +1.8
1,727,034 - ABZR87_RS08125 0.60 +0.7
1,727,034 - ABZR87_RS08125 0.60 +0.6
1,727,034 - ABZR87_RS08125 0.60 +1.4
1,727,034 - ABZR87_RS08125 0.60 -0.0
1,727,082 - ABZR87_RS08125 0.64 +0.4
1,727,293 + ABZR87_RS08125 0.82 +0.4
1,727,357 + ABZR87_RS08125 0.88 +0.7
1,727,357 + ABZR87_RS08125 0.88 -2.1
1,727,358 - ABZR87_RS08125 0.88 -0.1
1,727,579 + +0.4
1,727,584 + -0.2
1,727,584 + +2.0
1,727,584 + +0.1
1,727,584 + +0.0
1,727,585 - -0.1
1,727,585 - +0.6
1,727,585 - -0.5
1,727,698 + +0.3
1,727,721 + +0.3
1,727,722 - -1.6
1,727,722 - +0.5
1,727,732 + +1.2
1,727,732 + +0.7
1,727,733 - -1.3
1,727,733 - +0.9
1,727,733 - +0.2
1,727,814 + ABZR87_RS08130 0.25 +1.0
1,727,816 + ABZR87_RS08130 0.26 -0.2
1,727,816 + ABZR87_RS08130 0.26 -0.6
1,727,817 - ABZR87_RS08130 0.26 -0.1
1,727,840 + ABZR87_RS08130 0.32 -1.1
1,727,841 - ABZR87_RS08130 0.32 +0.3
1,727,853 + ABZR87_RS08130 0.35 -0.8
1,727,892 + ABZR87_RS08130 0.45 +0.7
1,727,892 + ABZR87_RS08130 0.45 -0.4
1,727,976 + ABZR87_RS08130 0.67 -0.6
1,727,976 + ABZR87_RS08130 0.67 +2.0
1,727,976 + ABZR87_RS08130 0.67 -0.1
1,727,976 + ABZR87_RS08130 0.67 -0.6
1,727,977 - ABZR87_RS08130 0.67 -0.5
1,727,985 + ABZR87_RS08130 0.69 -0.3
1,727,985 + ABZR87_RS08130 0.69 +1.0
1,727,985 + ABZR87_RS08130 0.69 +0.0
1,727,985 + ABZR87_RS08130 0.69 -0.2
1,727,985 + ABZR87_RS08130 0.69 -0.2
1,727,986 - ABZR87_RS08130 0.69 -0.3
1,727,986 - ABZR87_RS08130 0.69 -0.9
1,727,986 - ABZR87_RS08130 0.69 +0.7
1,727,986 - ABZR87_RS08130 0.69 -0.1
1,727,986 - ABZR87_RS08130 0.69 -0.8
1,728,024 + ABZR87_RS08130 0.79 +0.6
1,728,024 + ABZR87_RS08130 0.79 +1.0
1,728,024 + ABZR87_RS08130 0.79 +0.7
1,728,025 - ABZR87_RS08130 0.79 -0.0
1,728,025 - ABZR87_RS08130 0.79 +0.8
1,728,025 - ABZR87_RS08130 0.79 +0.1
1,728,026 + ABZR87_RS08130 0.80 -0.4
1,728,026 + ABZR87_RS08130 0.80 +0.6
1,728,027 - ABZR87_RS08130 0.80 +0.2
1,728,063 + ABZR87_RS08130 0.89 -0.6
1,728,102 + -0.2
1,728,102 + -0.4
1,728,102 + -1.2
1,728,102 + +0.1
1,728,103 - +0.8
1,728,103 - -0.2
1,728,103 - -0.5
1,728,210 - ABZR87_RS08135 0.11 +0.2
1,728,368 - ABZR87_RS08135 0.30 +0.6
1,728,368 - ABZR87_RS08135 0.30 +0.4
1,728,486 - ABZR87_RS08135 0.44 -0.7

Or see this region's nucleotide sequence