Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06415

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06410 and ABZR87_RS06415 are separated by 16 nucleotidesABZR87_RS06415 and ABZR87_RS06420 are separated by 1 nucleotides ABZR87_RS06410: ABZR87_RS06410 - methionine synthase, at 1,365,483 to 1,368,200 _RS06410 ABZR87_RS06415: ABZR87_RS06415 - VOC family protein, at 1,368,217 to 1,368,570 _RS06415 ABZR87_RS06420: ABZR87_RS06420 - homocysteine S-methyltransferase family protein, at 1,368,572 to 1,369,612 _RS06420 Position (kb) 1368 1369Strain fitness (log2 ratio) -2 -1 0 1 2at 1367.290 kb on + strand, within ABZR87_RS06410at 1367.290 kb on + strand, within ABZR87_RS06410at 1367.290 kb on + strand, within ABZR87_RS06410at 1367.290 kb on + strand, within ABZR87_RS06410at 1367.291 kb on - strand, within ABZR87_RS06410at 1367.389 kb on + strand, within ABZR87_RS06410at 1367.390 kb on - strand, within ABZR87_RS06410at 1367.446 kb on + strand, within ABZR87_RS06410at 1367.446 kb on + strand, within ABZR87_RS06410at 1367.446 kb on + strand, within ABZR87_RS06410at 1367.447 kb on - strand, within ABZR87_RS06410at 1367.447 kb on - strand, within ABZR87_RS06410at 1367.449 kb on + strand, within ABZR87_RS06410at 1367.449 kb on + strand, within ABZR87_RS06410at 1367.450 kb on - strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.590 kb on + strand, within ABZR87_RS06410at 1367.591 kb on - strand, within ABZR87_RS06410at 1367.591 kb on - strand, within ABZR87_RS06410at 1367.591 kb on - strand, within ABZR87_RS06410at 1367.591 kb on - strand, within ABZR87_RS06410at 1367.591 kb on - strand, within ABZR87_RS06410at 1367.591 kb on - strand, within ABZR87_RS06410at 1367.591 kb on - strand, within ABZR87_RS06410at 1367.690 kb on - strand, within ABZR87_RS06410at 1367.690 kb on - strand, within ABZR87_RS06410at 1367.777 kb on - strand, within ABZR87_RS06410at 1367.777 kb on - strand, within ABZR87_RS06410at 1367.777 kb on - strand, within ABZR87_RS06410at 1368.230 kb on + strandat 1368.230 kb on + strandat 1368.230 kb on + strandat 1368.272 kb on + strand, within ABZR87_RS06415at 1368.272 kb on + strand, within ABZR87_RS06415at 1368.272 kb on + strand, within ABZR87_RS06415at 1368.273 kb on - strand, within ABZR87_RS06415at 1368.273 kb on - strand, within ABZR87_RS06415at 1368.273 kb on - strand, within ABZR87_RS06415at 1368.273 kb on - strand, within ABZR87_RS06415at 1368.285 kb on + strand, within ABZR87_RS06415at 1368.286 kb on - strand, within ABZR87_RS06415at 1368.374 kb on + strand, within ABZR87_RS06415at 1368.374 kb on + strand, within ABZR87_RS06415at 1368.374 kb on + strand, within ABZR87_RS06415at 1368.374 kb on + strand, within ABZR87_RS06415at 1368.374 kb on + strand, within ABZR87_RS06415at 1368.375 kb on - strand, within ABZR87_RS06415at 1368.375 kb on - strand, within ABZR87_RS06415at 1368.375 kb on - strand, within ABZR87_RS06415at 1368.375 kb on - strand, within ABZR87_RS06415at 1368.455 kb on + strand, within ABZR87_RS06415at 1368.501 kb on - strand, within ABZR87_RS06415at 1368.501 kb on - strand, within ABZR87_RS06415at 1368.589 kb on - strandat 1368.589 kb on - strandat 1368.589 kb on - strandat 1368.790 kb on - strand, within ABZR87_RS06420at 1368.834 kb on + strand, within ABZR87_RS06420at 1368.834 kb on + strand, within ABZR87_RS06420at 1368.835 kb on - strand, within ABZR87_RS06420at 1368.835 kb on - strand, within ABZR87_RS06420at 1368.835 kb on - strand, within ABZR87_RS06420at 1368.835 kb on - strand, within ABZR87_RS06420at 1368.835 kb on - strand, within ABZR87_RS06420at 1368.835 kb on - strand, within ABZR87_RS06420at 1369.073 kb on + strand, within ABZR87_RS06420at 1369.073 kb on + strand, within ABZR87_RS06420at 1369.073 kb on + strand, within ABZR87_RS06420at 1369.073 kb on + strand, within ABZR87_RS06420at 1369.073 kb on + strand, within ABZR87_RS06420at 1369.073 kb on + strand, within ABZR87_RS06420at 1369.074 kb on - strand, within ABZR87_RS06420at 1369.074 kb on - strand, within ABZR87_RS06420at 1369.113 kb on + strand, within ABZR87_RS06420at 1369.113 kb on + strand, within ABZR87_RS06420at 1369.114 kb on - strand, within ABZR87_RS06420at 1369.114 kb on - strand, within ABZR87_RS06420at 1369.114 kb on - strand, within ABZR87_RS06420at 1369.114 kb on - strand, within ABZR87_RS06420at 1369.114 kb on - strand, within ABZR87_RS06420at 1369.116 kb on + strand, within ABZR87_RS06420at 1369.116 kb on + strand, within ABZR87_RS06420at 1369.116 kb on + strand, within ABZR87_RS06420at 1369.116 kb on + strand, within ABZR87_RS06420at 1369.116 kb on + strand, within ABZR87_RS06420at 1369.116 kb on + strand, within ABZR87_RS06420at 1369.116 kb on + strand, within ABZR87_RS06420at 1369.116 kb on + strand, within ABZR87_RS06420at 1369.117 kb on - strand, within ABZR87_RS06420at 1369.117 kb on - strand, within ABZR87_RS06420at 1369.117 kb on - strand, within ABZR87_RS06420at 1369.117 kb on - strand, within ABZR87_RS06420at 1369.245 kb on + strand, within ABZR87_RS06420at 1369.245 kb on + strand, within ABZR87_RS06420at 1369.245 kb on + strand, within ABZR87_RS06420at 1369.245 kb on + strand, within ABZR87_RS06420at 1369.245 kb on + strand, within ABZR87_RS06420at 1369.245 kb on + strand, within ABZR87_RS06420at 1369.245 kb on + strand, within ABZR87_RS06420at 1369.246 kb on - strand, within ABZR87_RS06420at 1369.246 kb on - strand, within ABZR87_RS06420at 1369.246 kb on - strand, within ABZR87_RS06420at 1369.246 kb on - strand, within ABZR87_RS06420at 1369.246 kb on - strand, within ABZR87_RS06420at 1369.246 kb on - strand, within ABZR87_RS06420at 1369.246 kb on - strand, within ABZR87_RS06420at 1369.280 kb on + strand, within ABZR87_RS06420at 1369.296 kb on + strand, within ABZR87_RS06420at 1369.296 kb on + strand, within ABZR87_RS06420at 1369.296 kb on + strand, within ABZR87_RS06420at 1369.296 kb on + strand, within ABZR87_RS06420at 1369.297 kb on - strand, within ABZR87_RS06420at 1369.297 kb on - strand, within ABZR87_RS06420at 1369.317 kb on + strand, within ABZR87_RS06420at 1369.317 kb on + strand, within ABZR87_RS06420at 1369.317 kb on + strand, within ABZR87_RS06420at 1369.317 kb on + strand, within ABZR87_RS06420at 1369.317 kb on + strand, within ABZR87_RS06420at 1369.317 kb on + strand, within ABZR87_RS06420at 1369.317 kb on + strand, within ABZR87_RS06420at 1369.318 kb on - strand, within ABZR87_RS06420at 1369.318 kb on - strand, within ABZR87_RS06420at 1369.318 kb on - strand, within ABZR87_RS06420at 1369.318 kb on - strand, within ABZR87_RS06420at 1369.386 kb on + strand, within ABZR87_RS06420at 1369.386 kb on + strand, within ABZR87_RS06420at 1369.386 kb on + strand, within ABZR87_RS06420at 1369.386 kb on + strand, within ABZR87_RS06420at 1369.387 kb on - strand, within ABZR87_RS06420at 1369.387 kb on - strand, within ABZR87_RS06420at 1369.444 kb on + strand, within ABZR87_RS06420at 1369.488 kb on + strand, within ABZR87_RS06420at 1369.489 kb on - strand, within ABZR87_RS06420at 1369.509 kb on + strandat 1369.510 kb on - strandat 1369.510 kb on - strandat 1369.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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1,367,290 + ABZR87_RS06410 0.66 -0.0
1,367,290 + ABZR87_RS06410 0.66 +0.4
1,367,290 + ABZR87_RS06410 0.66 +0.9
1,367,290 + ABZR87_RS06410 0.66 +2.2
1,367,291 - ABZR87_RS06410 0.67 -0.1
1,367,389 + ABZR87_RS06410 0.70 -0.5
1,367,390 - ABZR87_RS06410 0.70 +0.5
1,367,446 + ABZR87_RS06410 0.72 +1.4
1,367,446 + ABZR87_RS06410 0.72 -0.2
1,367,446 + ABZR87_RS06410 0.72 +0.3
1,367,447 - ABZR87_RS06410 0.72 +1.1
1,367,447 - ABZR87_RS06410 0.72 +0.9
1,367,449 + ABZR87_RS06410 0.72 +0.8
1,367,449 + ABZR87_RS06410 0.72 +0.5
1,367,450 - ABZR87_RS06410 0.72 -0.9
1,367,590 + ABZR87_RS06410 0.78 +1.1
1,367,590 + ABZR87_RS06410 0.78 -0.2
1,367,590 + ABZR87_RS06410 0.78 -0.6
1,367,590 + ABZR87_RS06410 0.78 -1.4
1,367,590 + ABZR87_RS06410 0.78 -0.3
1,367,590 + ABZR87_RS06410 0.78 +0.2
1,367,590 + ABZR87_RS06410 0.78 +1.2
1,367,590 + ABZR87_RS06410 0.78 -0.5
1,367,590 + ABZR87_RS06410 0.78 -0.2
1,367,590 + ABZR87_RS06410 0.78 +0.4
1,367,590 + ABZR87_RS06410 0.78 +0.0
1,367,590 + ABZR87_RS06410 0.78 +0.4
1,367,590 + ABZR87_RS06410 0.78 +0.4
1,367,590 + ABZR87_RS06410 0.78 +0.4
1,367,591 - ABZR87_RS06410 0.78 +0.6
1,367,591 - ABZR87_RS06410 0.78 -0.5
1,367,591 - ABZR87_RS06410 0.78 -2.7
1,367,591 - ABZR87_RS06410 0.78 +1.4
1,367,591 - ABZR87_RS06410 0.78 -1.6
1,367,591 - ABZR87_RS06410 0.78 +0.4
1,367,591 - ABZR87_RS06410 0.78 -0.3
1,367,690 - ABZR87_RS06410 0.81 -0.7
1,367,690 - ABZR87_RS06410 0.81 -0.8
1,367,777 - ABZR87_RS06410 0.84 -0.3
1,367,777 - ABZR87_RS06410 0.84 -0.7
1,367,777 - ABZR87_RS06410 0.84 -0.3
1,368,230 + -1.4
1,368,230 + +0.0
1,368,230 + -0.3
1,368,272 + ABZR87_RS06415 0.16 +0.4
1,368,272 + ABZR87_RS06415 0.16 -0.4
1,368,272 + ABZR87_RS06415 0.16 +0.7
1,368,273 - ABZR87_RS06415 0.16 -2.0
1,368,273 - ABZR87_RS06415 0.16 -0.0
1,368,273 - ABZR87_RS06415 0.16 -0.2
1,368,273 - ABZR87_RS06415 0.16 +0.3
1,368,285 + ABZR87_RS06415 0.19 +1.1
1,368,286 - ABZR87_RS06415 0.19 -1.3
1,368,374 + ABZR87_RS06415 0.44 +1.2
1,368,374 + ABZR87_RS06415 0.44 +0.0
1,368,374 + ABZR87_RS06415 0.44 +0.8
1,368,374 + ABZR87_RS06415 0.44 -0.1
1,368,374 + ABZR87_RS06415 0.44 +0.2
1,368,375 - ABZR87_RS06415 0.45 -0.1
1,368,375 - ABZR87_RS06415 0.45 -0.5
1,368,375 - ABZR87_RS06415 0.45 -0.2
1,368,375 - ABZR87_RS06415 0.45 +0.8
1,368,455 + ABZR87_RS06415 0.67 -0.2
1,368,501 - ABZR87_RS06415 0.80 -0.8
1,368,501 - ABZR87_RS06415 0.80 -0.8
1,368,589 - -0.6
1,368,589 - -0.7
1,368,589 - -0.4
1,368,790 - ABZR87_RS06420 0.21 +0.5
1,368,834 + ABZR87_RS06420 0.25 +0.5
1,368,834 + ABZR87_RS06420 0.25 -1.5
1,368,835 - ABZR87_RS06420 0.25 -0.0
1,368,835 - ABZR87_RS06420 0.25 -0.2
1,368,835 - ABZR87_RS06420 0.25 -0.1
1,368,835 - ABZR87_RS06420 0.25 -0.6
1,368,835 - ABZR87_RS06420 0.25 -0.7
1,368,835 - ABZR87_RS06420 0.25 +0.1
1,369,073 + ABZR87_RS06420 0.48 -0.9
1,369,073 + ABZR87_RS06420 0.48 +0.2
1,369,073 + ABZR87_RS06420 0.48 -1.3
1,369,073 + ABZR87_RS06420 0.48 +0.5
1,369,073 + ABZR87_RS06420 0.48 +0.6
1,369,073 + ABZR87_RS06420 0.48 +0.5
1,369,074 - ABZR87_RS06420 0.48 -0.8
1,369,074 - ABZR87_RS06420 0.48 -0.3
1,369,113 + ABZR87_RS06420 0.52 +0.3
1,369,113 + ABZR87_RS06420 0.52 +1.3
1,369,114 - ABZR87_RS06420 0.52 -0.8
1,369,114 - ABZR87_RS06420 0.52 -1.4
1,369,114 - ABZR87_RS06420 0.52 +0.7
1,369,114 - ABZR87_RS06420 0.52 +0.5
1,369,114 - ABZR87_RS06420 0.52 -1.2
1,369,116 + ABZR87_RS06420 0.52 +0.1
1,369,116 + ABZR87_RS06420 0.52 +0.7
1,369,116 + ABZR87_RS06420 0.52 +0.7
1,369,116 + ABZR87_RS06420 0.52 -0.8
1,369,116 + ABZR87_RS06420 0.52 +0.1
1,369,116 + ABZR87_RS06420 0.52 +0.9
1,369,116 + ABZR87_RS06420 0.52 +0.5
1,369,116 + ABZR87_RS06420 0.52 +0.6
1,369,117 - ABZR87_RS06420 0.52 +0.4
1,369,117 - ABZR87_RS06420 0.52 -0.7
1,369,117 - ABZR87_RS06420 0.52 +1.3
1,369,117 - ABZR87_RS06420 0.52 +0.0
1,369,245 + ABZR87_RS06420 0.65 +0.6
1,369,245 + ABZR87_RS06420 0.65 +0.6
1,369,245 + ABZR87_RS06420 0.65 +0.6
1,369,245 + ABZR87_RS06420 0.65 -0.8
1,369,245 + ABZR87_RS06420 0.65 +0.5
1,369,245 + ABZR87_RS06420 0.65 -0.1
1,369,245 + ABZR87_RS06420 0.65 -0.8
1,369,246 - ABZR87_RS06420 0.65 +0.1
1,369,246 - ABZR87_RS06420 0.65 +0.3
1,369,246 - ABZR87_RS06420 0.65 +0.7
1,369,246 - ABZR87_RS06420 0.65 -0.1
1,369,246 - ABZR87_RS06420 0.65 -0.8
1,369,246 - ABZR87_RS06420 0.65 -0.8
1,369,246 - ABZR87_RS06420 0.65 -0.3
1,369,280 + ABZR87_RS06420 0.68 +0.8
1,369,296 + ABZR87_RS06420 0.70 +0.1
1,369,296 + ABZR87_RS06420 0.70 +0.1
1,369,296 + ABZR87_RS06420 0.70 +0.0
1,369,296 + ABZR87_RS06420 0.70 +0.2
1,369,297 - ABZR87_RS06420 0.70 -0.6
1,369,297 - ABZR87_RS06420 0.70 -0.0
1,369,317 + ABZR87_RS06420 0.72 +1.3
1,369,317 + ABZR87_RS06420 0.72 +1.0
1,369,317 + ABZR87_RS06420 0.72 +1.2
1,369,317 + ABZR87_RS06420 0.72 +0.2
1,369,317 + ABZR87_RS06420 0.72 +0.7
1,369,317 + ABZR87_RS06420 0.72 +0.4
1,369,317 + ABZR87_RS06420 0.72 +1.2
1,369,318 - ABZR87_RS06420 0.72 +0.4
1,369,318 - ABZR87_RS06420 0.72 +0.4
1,369,318 - ABZR87_RS06420 0.72 +1.6
1,369,318 - ABZR87_RS06420 0.72 +0.3
1,369,386 + ABZR87_RS06420 0.78 +0.7
1,369,386 + ABZR87_RS06420 0.78 +0.7
1,369,386 + ABZR87_RS06420 0.78 +0.4
1,369,386 + ABZR87_RS06420 0.78 +0.2
1,369,387 - ABZR87_RS06420 0.78 +0.1
1,369,387 - ABZR87_RS06420 0.78 +0.9
1,369,444 + ABZR87_RS06420 0.84 +1.0
1,369,488 + ABZR87_RS06420 0.88 -0.5
1,369,489 - ABZR87_RS06420 0.88 -0.0
1,369,509 + +0.2
1,369,510 - +0.4
1,369,510 - +0.6
1,369,510 - -0.2

Or see this region's nucleotide sequence