Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03950

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03945 and ABZR87_RS03950 are separated by 14 nucleotidesABZR87_RS03950 and ABZR87_RS03955 are separated by 21 nucleotides ABZR87_RS03945: ABZR87_RS03945 - oligopeptide transporter, OPT family, at 821,544 to 823,598 _RS03945 ABZR87_RS03950: ABZR87_RS03950 - GNAT family N-acetyltransferase, at 823,613 to 824,128 _RS03950 ABZR87_RS03955: ABZR87_RS03955 - YbdK family carboxylate-amine ligase, at 824,150 to 825,283 _RS03955 Position (kb) 823 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 822.691 kb on - strand, within ABZR87_RS03945at 823.011 kb on + strand, within ABZR87_RS03945at 823.011 kb on + strand, within ABZR87_RS03945at 823.012 kb on - strand, within ABZR87_RS03945at 823.012 kb on - strand, within ABZR87_RS03945at 823.012 kb on - strand, within ABZR87_RS03945at 823.012 kb on - strand, within ABZR87_RS03945at 823.020 kb on + strand, within ABZR87_RS03945at 823.020 kb on + strand, within ABZR87_RS03945at 823.020 kb on + strand, within ABZR87_RS03945at 823.021 kb on - strand, within ABZR87_RS03945at 823.021 kb on - strand, within ABZR87_RS03945at 823.021 kb on - strand, within ABZR87_RS03945at 823.254 kb on + strand, within ABZR87_RS03945at 823.254 kb on + strand, within ABZR87_RS03945at 823.255 kb on - strand, within ABZR87_RS03945at 823.255 kb on - strand, within ABZR87_RS03945at 823.255 kb on - strand, within ABZR87_RS03945at 823.255 kb on - strand, within ABZR87_RS03945at 823.255 kb on - strand, within ABZR87_RS03945at 823.255 kb on - strand, within ABZR87_RS03945at 823.255 kb on - strand, within ABZR87_RS03945at 823.255 kb on - strand, within ABZR87_RS03945at 823.255 kb on - strand, within ABZR87_RS03945at 823.352 kb on - strand, within ABZR87_RS03945at 823.356 kb on + strand, within ABZR87_RS03945at 823.357 kb on - strand, within ABZR87_RS03945at 823.357 kb on - strand, within ABZR87_RS03945at 823.357 kb on - strand, within ABZR87_RS03945at 823.357 kb on - strand, within ABZR87_RS03945at 823.366 kb on - strand, within ABZR87_RS03945at 823.366 kb on - strand, within ABZR87_RS03945at 823.438 kb on + strandat 823.439 kb on - strandat 823.439 kb on - strandat 823.439 kb on - strandat 823.439 kb on - strandat 823.549 kb on + strandat 823.549 kb on + strandat 823.549 kb on + strandat 823.549 kb on + strandat 823.549 kb on + strandat 823.549 kb on + strandat 823.549 kb on + strandat 823.549 kb on + strandat 823.549 kb on + strandat 823.549 kb on + strandat 823.550 kb on - strandat 823.550 kb on - strandat 823.550 kb on - strandat 823.664 kb on + strandat 823.665 kb on - strand, within ABZR87_RS03950at 823.665 kb on - strand, within ABZR87_RS03950at 823.665 kb on - strand, within ABZR87_RS03950at 823.665 kb on - strand, within ABZR87_RS03950at 823.665 kb on - strand, within ABZR87_RS03950at 823.665 kb on - strand, within ABZR87_RS03950at 823.698 kb on - strand, within ABZR87_RS03950at 824.397 kb on + strand, within ABZR87_RS03955at 824.397 kb on + strand, within ABZR87_RS03955at 824.397 kb on + strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.445 kb on + strand, within ABZR87_RS03955at 824.446 kb on - strand, within ABZR87_RS03955at 824.454 kb on + strand, within ABZR87_RS03955at 824.454 kb on + strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.515 kb on + strand, within ABZR87_RS03955at 824.515 kb on + strand, within ABZR87_RS03955at 824.516 kb on - strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.518 kb on - strand, within ABZR87_RS03955at 824.518 kb on - strand, within ABZR87_RS03955at 824.518 kb on - strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.614 kb on - strand, within ABZR87_RS03955at 824.614 kb on - strand, within ABZR87_RS03955at 824.664 kb on + strand, within ABZR87_RS03955at 824.664 kb on + strand, within ABZR87_RS03955at 824.664 kb on + strand, within ABZR87_RS03955at 824.811 kb on - strand, within ABZR87_RS03955at 824.814 kb on + strand, within ABZR87_RS03955at 824.814 kb on + strand, within ABZR87_RS03955at 824.815 kb on - strand, within ABZR87_RS03955at 824.838 kb on + strand, within ABZR87_RS03955at 824.838 kb on + strand, within ABZR87_RS03955at 824.839 kb on - strand, within ABZR87_RS03955at 824.839 kb on - strand, within ABZR87_RS03955at 824.839 kb on - strand, within ABZR87_RS03955at 824.910 kb on + strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.938 kb on - strand, within ABZR87_RS03955

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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822,691 - ABZR87_RS03945 0.56 +1.2
823,011 + ABZR87_RS03945 0.71 +0.2
823,011 + ABZR87_RS03945 0.71 +0.4
823,012 - ABZR87_RS03945 0.71 +0.1
823,012 - ABZR87_RS03945 0.71 +1.0
823,012 - ABZR87_RS03945 0.71 +2.3
823,012 - ABZR87_RS03945 0.71 +0.1
823,020 + ABZR87_RS03945 0.72 +0.2
823,020 + ABZR87_RS03945 0.72 -0.7
823,020 + ABZR87_RS03945 0.72 +0.8
823,021 - ABZR87_RS03945 0.72 +0.2
823,021 - ABZR87_RS03945 0.72 -0.4
823,021 - ABZR87_RS03945 0.72 +0.4
823,254 + ABZR87_RS03945 0.83 +0.7
823,254 + ABZR87_RS03945 0.83 +0.7
823,255 - ABZR87_RS03945 0.83 +0.9
823,255 - ABZR87_RS03945 0.83 -0.1
823,255 - ABZR87_RS03945 0.83 +1.3
823,255 - ABZR87_RS03945 0.83 +0.3
823,255 - ABZR87_RS03945 0.83 +0.2
823,255 - ABZR87_RS03945 0.83 +0.5
823,255 - ABZR87_RS03945 0.83 -0.6
823,255 - ABZR87_RS03945 0.83 -1.8
823,255 - ABZR87_RS03945 0.83 +0.3
823,352 - ABZR87_RS03945 0.88 -0.5
823,356 + ABZR87_RS03945 0.88 +0.3
823,357 - ABZR87_RS03945 0.88 +0.5
823,357 - ABZR87_RS03945 0.88 +0.7
823,357 - ABZR87_RS03945 0.88 +1.6
823,357 - ABZR87_RS03945 0.88 +1.3
823,366 - ABZR87_RS03945 0.89 -0.4
823,366 - ABZR87_RS03945 0.89 +0.2
823,438 + +0.8
823,439 - +1.3
823,439 - +0.2
823,439 - +0.2
823,439 - +0.6
823,549 + +0.2
823,549 + -0.0
823,549 + +0.5
823,549 + +0.6
823,549 + -0.5
823,549 + -1.1
823,549 + +0.9
823,549 + +0.2
823,549 + +0.4
823,549 + +0.3
823,550 - +0.6
823,550 - +1.3
823,550 - -0.6
823,664 + -1.0
823,665 - ABZR87_RS03950 0.10 +0.7
823,665 - ABZR87_RS03950 0.10 +0.1
823,665 - ABZR87_RS03950 0.10 +0.0
823,665 - ABZR87_RS03950 0.10 +0.1
823,665 - ABZR87_RS03950 0.10 -0.8
823,665 - ABZR87_RS03950 0.10 +1.0
823,698 - ABZR87_RS03950 0.16 +0.9
824,397 + ABZR87_RS03955 0.22 +0.3
824,397 + ABZR87_RS03955 0.22 -1.2
824,397 + ABZR87_RS03955 0.22 -0.1
824,398 - ABZR87_RS03955 0.22 -0.6
824,398 - ABZR87_RS03955 0.22 -1.3
824,398 - ABZR87_RS03955 0.22 +0.0
824,398 - ABZR87_RS03955 0.22 -3.7
824,445 + ABZR87_RS03955 0.26 +0.8
824,446 - ABZR87_RS03955 0.26 +0.0
824,454 + ABZR87_RS03955 0.27 -0.5
824,454 + ABZR87_RS03955 0.27 -0.9
824,455 - ABZR87_RS03955 0.27 -1.9
824,455 - ABZR87_RS03955 0.27 -0.1
824,455 - ABZR87_RS03955 0.27 -2.8
824,455 - ABZR87_RS03955 0.27 +0.6
824,515 + ABZR87_RS03955 0.32 +0.3
824,515 + ABZR87_RS03955 0.32 -0.7
824,516 - ABZR87_RS03955 0.32 +0.0
824,517 + ABZR87_RS03955 0.32 +1.3
824,517 + ABZR87_RS03955 0.32 -1.1
824,517 + ABZR87_RS03955 0.32 -1.5
824,517 + ABZR87_RS03955 0.32 -1.6
824,517 + ABZR87_RS03955 0.32 +1.5
824,517 + ABZR87_RS03955 0.32 +0.0
824,517 + ABZR87_RS03955 0.32 -0.6
824,518 - ABZR87_RS03955 0.32 -0.3
824,518 - ABZR87_RS03955 0.32 -0.6
824,518 - ABZR87_RS03955 0.32 +0.1
824,613 + ABZR87_RS03955 0.41 -0.8
824,613 + ABZR87_RS03955 0.41 +0.3
824,613 + ABZR87_RS03955 0.41 -1.9
824,613 + ABZR87_RS03955 0.41 -0.2
824,613 + ABZR87_RS03955 0.41 -1.0
824,614 - ABZR87_RS03955 0.41 -2.7
824,614 - ABZR87_RS03955 0.41 +0.2
824,664 + ABZR87_RS03955 0.45 +0.2
824,664 + ABZR87_RS03955 0.45 +0.6
824,664 + ABZR87_RS03955 0.45 -1.2
824,811 - ABZR87_RS03955 0.58 -1.5
824,814 + ABZR87_RS03955 0.59 -1.2
824,814 + ABZR87_RS03955 0.59 -0.7
824,815 - ABZR87_RS03955 0.59 -1.4
824,838 + ABZR87_RS03955 0.61 -1.7
824,838 + ABZR87_RS03955 0.61 -0.3
824,839 - ABZR87_RS03955 0.61 +1.9
824,839 - ABZR87_RS03955 0.61 -1.7
824,839 - ABZR87_RS03955 0.61 +0.6
824,910 + ABZR87_RS03955 0.67 -0.7
824,917 - ABZR87_RS03955 0.68 +0.5
824,917 - ABZR87_RS03955 0.68 -1.5
824,917 - ABZR87_RS03955 0.68 -0.2
824,917 - ABZR87_RS03955 0.68 -1.7
824,931 + ABZR87_RS03955 0.69 -0.5
824,931 + ABZR87_RS03955 0.69 -2.4
824,931 + ABZR87_RS03955 0.69 -1.8
824,931 + ABZR87_RS03955 0.69 -0.5
824,931 + ABZR87_RS03955 0.69 -0.3
824,932 - ABZR87_RS03955 0.69 -0.6
824,932 - ABZR87_RS03955 0.69 -1.8
824,932 - ABZR87_RS03955 0.69 +0.5
824,932 - ABZR87_RS03955 0.69 +0.8
824,932 - ABZR87_RS03955 0.69 -1.6
824,932 - ABZR87_RS03955 0.69 -0.8
824,932 - ABZR87_RS03955 0.69 -1.1
824,938 - ABZR87_RS03955 0.69 -0.0

Or see this region's nucleotide sequence