Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03095

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03090 and ABZR87_RS03095 are separated by 29 nucleotidesABZR87_RS03095 and ABZR87_RS03100 are separated by 3 nucleotidesABZR87_RS03100 and ABZR87_RS03105 are separated by 202 nucleotides ABZR87_RS03090: ABZR87_RS03090 - helix-turn-helix transcriptional regulator, at 650,596 to 651,393 _RS03090 ABZR87_RS03095: ABZR87_RS03095 - ATP-binding protein, at 651,423 to 652,763 _RS03095 ABZR87_RS03100: ABZR87_RS03100 - response regulator transcription factor, at 652,767 to 653,498 _RS03100 ABZR87_RS03105: ABZR87_RS03105 - MipA/OmpV family protein, at 653,701 to 654,498 _RS03105 Position (kb) 651 652 653Strain fitness (log2 ratio) -2 -1 0 1 2at 650.481 kb on + strandat 650.481 kb on + strandat 650.481 kb on + strandat 650.482 kb on - strandat 650.482 kb on - strandat 650.482 kb on - strandat 650.482 kb on - strandat 650.482 kb on - strandat 650.562 kb on - strandat 650.562 kb on - strandat 650.562 kb on - strandat 650.668 kb on + strandat 650.668 kb on + strandat 650.668 kb on + strandat 650.668 kb on + strandat 650.668 kb on + strandat 650.669 kb on - strandat 650.669 kb on - strandat 650.734 kb on + strand, within ABZR87_RS03090at 650.734 kb on + strand, within ABZR87_RS03090at 650.734 kb on + strand, within ABZR87_RS03090at 650.734 kb on + strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.735 kb on - strand, within ABZR87_RS03090at 650.736 kb on + strand, within ABZR87_RS03090at 650.736 kb on + strand, within ABZR87_RS03090at 650.737 kb on - strand, within ABZR87_RS03090at 650.824 kb on + strand, within ABZR87_RS03090at 650.862 kb on + strand, within ABZR87_RS03090at 650.862 kb on + strand, within ABZR87_RS03090at 650.862 kb on + strand, within ABZR87_RS03090at 650.862 kb on + strand, within ABZR87_RS03090at 650.863 kb on - strand, within ABZR87_RS03090at 650.863 kb on - strand, within ABZR87_RS03090at 650.863 kb on - strand, within ABZR87_RS03090at 650.863 kb on - strand, within ABZR87_RS03090at 650.869 kb on + strand, within ABZR87_RS03090at 650.869 kb on + strand, within ABZR87_RS03090at 650.869 kb on + strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 650.870 kb on - strand, within ABZR87_RS03090at 651.298 kb on + strand, within ABZR87_RS03090at 651.298 kb on + strand, within ABZR87_RS03090at 651.299 kb on - strand, within ABZR87_RS03090at 651.299 kb on - strand, within ABZR87_RS03090at 651.299 kb on - strand, within ABZR87_RS03090at 651.299 kb on - strand, within ABZR87_RS03090at 651.400 kb on + strandat 651.400 kb on + strandat 651.401 kb on - strandat 651.424 kb on + strandat 651.425 kb on - strandat 651.524 kb on - strandat 651.704 kb on + strand, within ABZR87_RS03095at 651.704 kb on + strand, within ABZR87_RS03095at 651.705 kb on - strand, within ABZR87_RS03095at 651.705 kb on - strand, within ABZR87_RS03095at 651.715 kb on + strand, within ABZR87_RS03095at 651.716 kb on - strand, within ABZR87_RS03095at 652.195 kb on + strand, within ABZR87_RS03095at 652.195 kb on + strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.196 kb on - strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.345 kb on + strand, within ABZR87_RS03095at 652.346 kb on - strand, within ABZR87_RS03095at 652.346 kb on - strand, within ABZR87_RS03095at 652.369 kb on + strand, within ABZR87_RS03095at 652.369 kb on + strand, within ABZR87_RS03095at 652.370 kb on - strand, within ABZR87_RS03095at 652.370 kb on - strand, within ABZR87_RS03095at 652.376 kb on + strand, within ABZR87_RS03095at 652.377 kb on - strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.387 kb on + strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.388 kb on - strand, within ABZR87_RS03095at 652.423 kb on + strand, within ABZR87_RS03095at 652.423 kb on + strand, within ABZR87_RS03095at 652.423 kb on + strand, within ABZR87_RS03095at 652.423 kb on + strand, within ABZR87_RS03095at 652.423 kb on + strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.424 kb on - strand, within ABZR87_RS03095at 652.426 kb on + strand, within ABZR87_RS03095at 652.426 kb on + strand, within ABZR87_RS03095at 652.426 kb on + strand, within ABZR87_RS03095at 652.426 kb on + strand, within ABZR87_RS03095at 652.426 kb on + strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.427 kb on - strand, within ABZR87_RS03095at 652.606 kb on + strand, within ABZR87_RS03095at 652.606 kb on + strand, within ABZR87_RS03095at 652.606 kb on + strand, within ABZR87_RS03095at 652.606 kb on + strand, within ABZR87_RS03095at 652.606 kb on + strand, within ABZR87_RS03095at 652.614 kb on + strand, within ABZR87_RS03095at 652.614 kb on + strand, within ABZR87_RS03095at 652.615 kb on - strand, within ABZR87_RS03095at 652.627 kb on + strand, within ABZR87_RS03095at 652.627 kb on + strand, within ABZR87_RS03095at 652.738 kb on + strandat 652.738 kb on + strandat 652.738 kb on + strandat 652.739 kb on - strandat 652.739 kb on - strandat 652.798 kb on + strandat 652.799 kb on - strandat 653.188 kb on + strand, within ABZR87_RS03100at 653.189 kb on - strand, within ABZR87_RS03100at 653.189 kb on - strand, within ABZR87_RS03100at 653.189 kb on - strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.227 kb on + strand, within ABZR87_RS03100at 653.228 kb on - strand, within ABZR87_RS03100at 653.228 kb on - strand, within ABZR87_RS03100at 653.410 kb on + strand, within ABZR87_RS03100at 653.410 kb on + strand, within ABZR87_RS03100at 653.410 kb on + strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.411 kb on - strand, within ABZR87_RS03100at 653.422 kb on + strand, within ABZR87_RS03100at 653.422 kb on + strand, within ABZR87_RS03100at 653.422 kb on + strand, within ABZR87_RS03100at 653.547 kb on + strandat 653.547 kb on + strandat 653.548 kb on - strandat 653.548 kb on - strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.698 kb on + strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.699 kb on - strandat 653.737 kb on + strandat 653.737 kb on + strandat 653.738 kb on - strandat 653.738 kb on - strandat 653.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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650,481 + +0.6
650,481 + +0.6
650,481 + -1.5
650,482 - -0.1
650,482 - +1.0
650,482 - +1.6
650,482 - +0.6
650,482 - -0.5
650,562 - +0.9
650,562 - +0.1
650,562 - -0.7
650,668 + -0.1
650,668 + +0.2
650,668 + -1.0
650,668 + -0.2
650,668 + -0.3
650,669 - +0.6
650,669 - -0.9
650,734 + ABZR87_RS03090 0.17 +0.1
650,734 + ABZR87_RS03090 0.17 +0.1
650,734 + ABZR87_RS03090 0.17 -0.2
650,734 + ABZR87_RS03090 0.17 +0.9
650,735 - ABZR87_RS03090 0.17 +0.2
650,735 - ABZR87_RS03090 0.17 -1.7
650,735 - ABZR87_RS03090 0.17 -0.7
650,735 - ABZR87_RS03090 0.17 -0.2
650,735 - ABZR87_RS03090 0.17 +0.1
650,735 - ABZR87_RS03090 0.17 +0.2
650,736 + ABZR87_RS03090 0.18 -0.6
650,736 + ABZR87_RS03090 0.18 +0.1
650,737 - ABZR87_RS03090 0.18 -1.2
650,824 + ABZR87_RS03090 0.29 -0.1
650,862 + ABZR87_RS03090 0.33 +0.8
650,862 + ABZR87_RS03090 0.33 -0.0
650,862 + ABZR87_RS03090 0.33 +0.9
650,862 + ABZR87_RS03090 0.33 -0.3
650,863 - ABZR87_RS03090 0.33 +1.8
650,863 - ABZR87_RS03090 0.33 +1.9
650,863 - ABZR87_RS03090 0.33 -0.2
650,863 - ABZR87_RS03090 0.33 -0.3
650,869 + ABZR87_RS03090 0.34 -0.7
650,869 + ABZR87_RS03090 0.34 +0.4
650,869 + ABZR87_RS03090 0.34 -0.7
650,870 - ABZR87_RS03090 0.34 +0.9
650,870 - ABZR87_RS03090 0.34 +0.7
650,870 - ABZR87_RS03090 0.34 -1.0
650,870 - ABZR87_RS03090 0.34 +0.2
650,870 - ABZR87_RS03090 0.34 -0.5
650,870 - ABZR87_RS03090 0.34 -0.6
650,870 - ABZR87_RS03090 0.34 -0.7
650,870 - ABZR87_RS03090 0.34 +0.3
650,870 - ABZR87_RS03090 0.34 -0.0
650,870 - ABZR87_RS03090 0.34 +0.5
650,870 - ABZR87_RS03090 0.34 +1.0
651,298 + ABZR87_RS03090 0.88 -0.1
651,298 + ABZR87_RS03090 0.88 +0.5
651,299 - ABZR87_RS03090 0.88 -0.9
651,299 - ABZR87_RS03090 0.88 +0.1
651,299 - ABZR87_RS03090 0.88 +0.6
651,299 - ABZR87_RS03090 0.88 +1.0
651,400 + +0.5
651,400 + -0.0
651,401 - -0.2
651,424 + +0.7
651,425 - +0.0
651,524 - -0.6
651,704 + ABZR87_RS03095 0.21 -0.1
651,704 + ABZR87_RS03095 0.21 -0.4
651,705 - ABZR87_RS03095 0.21 -0.6
651,705 - ABZR87_RS03095 0.21 -0.1
651,715 + ABZR87_RS03095 0.22 +0.3
651,716 - ABZR87_RS03095 0.22 -1.3
652,195 + ABZR87_RS03095 0.58 +0.5
652,195 + ABZR87_RS03095 0.58 -0.4
652,196 - ABZR87_RS03095 0.58 -0.0
652,196 - ABZR87_RS03095 0.58 -0.0
652,196 - ABZR87_RS03095 0.58 -0.9
652,196 - ABZR87_RS03095 0.58 +0.0
652,345 + ABZR87_RS03095 0.69 -0.9
652,345 + ABZR87_RS03095 0.69 +0.6
652,345 + ABZR87_RS03095 0.69 -0.2
652,345 + ABZR87_RS03095 0.69 +0.5
652,346 - ABZR87_RS03095 0.69 -0.1
652,346 - ABZR87_RS03095 0.69 +0.6
652,369 + ABZR87_RS03095 0.71 +0.6
652,369 + ABZR87_RS03095 0.71 +0.2
652,370 - ABZR87_RS03095 0.71 +0.5
652,370 - ABZR87_RS03095 0.71 +0.1
652,376 + ABZR87_RS03095 0.71 +1.1
652,377 - ABZR87_RS03095 0.71 +1.2
652,387 + ABZR87_RS03095 0.72 +0.9
652,387 + ABZR87_RS03095 0.72 +1.4
652,387 + ABZR87_RS03095 0.72 -0.5
652,387 + ABZR87_RS03095 0.72 +0.3
652,388 - ABZR87_RS03095 0.72 -0.2
652,388 - ABZR87_RS03095 0.72 -0.4
652,388 - ABZR87_RS03095 0.72 +0.2
652,388 - ABZR87_RS03095 0.72 -0.4
652,388 - ABZR87_RS03095 0.72 +0.1
652,423 + ABZR87_RS03095 0.75 +0.7
652,423 + ABZR87_RS03095 0.75 -0.0
652,423 + ABZR87_RS03095 0.75 +1.0
652,423 + ABZR87_RS03095 0.75 +0.8
652,423 + ABZR87_RS03095 0.75 +0.0
652,424 - ABZR87_RS03095 0.75 +0.3
652,424 - ABZR87_RS03095 0.75 +0.1
652,424 - ABZR87_RS03095 0.75 +0.1
652,424 - ABZR87_RS03095 0.75 +1.2
652,424 - ABZR87_RS03095 0.75 -0.0
652,424 - ABZR87_RS03095 0.75 -0.5
652,426 + ABZR87_RS03095 0.75 +1.1
652,426 + ABZR87_RS03095 0.75 +2.1
652,426 + ABZR87_RS03095 0.75 +0.8
652,426 + ABZR87_RS03095 0.75 +1.8
652,426 + ABZR87_RS03095 0.75 -0.5
652,427 - ABZR87_RS03095 0.75 +0.4
652,427 - ABZR87_RS03095 0.75 +0.0
652,427 - ABZR87_RS03095 0.75 +0.4
652,427 - ABZR87_RS03095 0.75 +0.3
652,427 - ABZR87_RS03095 0.75 +0.3
652,427 - ABZR87_RS03095 0.75 +0.3
652,427 - ABZR87_RS03095 0.75 +0.9
652,606 + ABZR87_RS03095 0.88 -1.5
652,606 + ABZR87_RS03095 0.88 +0.8
652,606 + ABZR87_RS03095 0.88 +2.3
652,606 + ABZR87_RS03095 0.88 +0.3
652,606 + ABZR87_RS03095 0.88 +0.6
652,614 + ABZR87_RS03095 0.89 -0.9
652,614 + ABZR87_RS03095 0.89 -0.3
652,615 - ABZR87_RS03095 0.89 -1.1
652,627 + ABZR87_RS03095 0.90 -1.1
652,627 + ABZR87_RS03095 0.90 +0.6
652,738 + +0.0
652,738 + -0.5
652,738 + +0.0
652,739 - -0.2
652,739 - -0.1
652,798 + +0.6
652,799 - +0.0
653,188 + ABZR87_RS03100 0.58 +0.5
653,189 - ABZR87_RS03100 0.58 +0.9
653,189 - ABZR87_RS03100 0.58 +0.4
653,189 - ABZR87_RS03100 0.58 -0.2
653,227 + ABZR87_RS03100 0.63 +0.4
653,227 + ABZR87_RS03100 0.63 +0.2
653,227 + ABZR87_RS03100 0.63 -0.4
653,227 + ABZR87_RS03100 0.63 -0.5
653,227 + ABZR87_RS03100 0.63 +1.0
653,227 + ABZR87_RS03100 0.63 -2.4
653,227 + ABZR87_RS03100 0.63 -0.2
653,228 - ABZR87_RS03100 0.63 -0.2
653,228 - ABZR87_RS03100 0.63 +1.0
653,410 + ABZR87_RS03100 0.88 -0.0
653,410 + ABZR87_RS03100 0.88 -0.8
653,410 + ABZR87_RS03100 0.88 +0.7
653,411 - ABZR87_RS03100 0.88 +1.6
653,411 - ABZR87_RS03100 0.88 +1.0
653,411 - ABZR87_RS03100 0.88 -0.1
653,411 - ABZR87_RS03100 0.88 +1.0
653,411 - ABZR87_RS03100 0.88 -0.1
653,411 - ABZR87_RS03100 0.88 +0.0
653,422 + ABZR87_RS03100 0.89 -0.2
653,422 + ABZR87_RS03100 0.89 +0.4
653,422 + ABZR87_RS03100 0.89 -0.0
653,547 + -0.3
653,547 + -0.6
653,548 - +0.1
653,548 - -0.4
653,698 + -0.2
653,698 + +1.0
653,698 + -0.4
653,698 + -0.1
653,698 + -0.5
653,698 + -0.4
653,698 + -0.1
653,698 + +0.3
653,699 - +0.5
653,699 - +0.2
653,699 - -0.9
653,699 - +0.3
653,699 - +0.3
653,699 - -1.0
653,699 - +0.9
653,737 + -0.5
653,737 + +0.2
653,738 - +0.5
653,738 - +0.3
653,738 - +0.9

Or see this region's nucleotide sequence