Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02585

Experiment: Heptanoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS02580 and ABZR87_RS02585 are separated by 215 nucleotidesABZR87_RS02585 and ABZR87_RS02590 are separated by 19 nucleotides ABZR87_RS02580: ABZR87_RS02580 - OmpW family protein, at 548,718 to 549,392 _RS02580 ABZR87_RS02585: ABZR87_RS02585 - deoxyguanosinetriphosphate triphosphohydrolase, at 549,608 to 550,774 _RS02585 ABZR87_RS02590: ABZR87_RS02590 - 3-dehydroquinate synthase, at 550,794 to 551,900 _RS02590 Position (kb) 549 550 551Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 548.870 kb on + strand, within ABZR87_RS02580at 548.870 kb on + strand, within ABZR87_RS02580at 548.870 kb on + strand, within ABZR87_RS02580at 548.871 kb on - strand, within ABZR87_RS02580at 548.871 kb on - strand, within ABZR87_RS02580at 548.871 kb on - strand, within ABZR87_RS02580at 548.948 kb on + strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.949 kb on - strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.955 kb on + strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.956 kb on - strand, within ABZR87_RS02580at 548.998 kb on - strand, within ABZR87_RS02580at 549.096 kb on + strand, within ABZR87_RS02580at 549.097 kb on - strand, within ABZR87_RS02580at 549.097 kb on - strand, within ABZR87_RS02580at 549.129 kb on + strand, within ABZR87_RS02580at 549.129 kb on + strand, within ABZR87_RS02580at 549.130 kb on - strand, within ABZR87_RS02580at 549.130 kb on - strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.150 kb on + strand, within ABZR87_RS02580at 549.151 kb on - strand, within ABZR87_RS02580at 549.151 kb on - strand, within ABZR87_RS02580at 549.151 kb on - strand, within ABZR87_RS02580at 549.209 kb on + strand, within ABZR87_RS02580at 549.209 kb on + strand, within ABZR87_RS02580at 549.209 kb on + strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.210 kb on - strand, within ABZR87_RS02580at 549.249 kb on + strand, within ABZR87_RS02580at 549.270 kb on + strand, within ABZR87_RS02580at 549.271 kb on - strand, within ABZR87_RS02580at 549.271 kb on - strand, within ABZR87_RS02580at 549.271 kb on - strand, within ABZR87_RS02580at 549.391 kb on - strandat 549.391 kb on - strandat 549.434 kb on + strandat 549.434 kb on + strandat 549.434 kb on + strandat 549.546 kb on - strandat 549.573 kb on + strandat 549.573 kb on + strandat 549.573 kb on + strandat 549.573 kb on + strandat 549.573 kb on + strandat 549.574 kb on - strandat 549.585 kb on + strandat 549.654 kb on + strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.678 kb on + strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.679 kb on - strandat 549.726 kb on + strand, within ABZR87_RS02585at 549.727 kb on - strand, within ABZR87_RS02585at 549.727 kb on - strand, within ABZR87_RS02585at 549.819 kb on + strand, within ABZR87_RS02585at 549.819 kb on + strand, within ABZR87_RS02585at 549.819 kb on + strand, within ABZR87_RS02585at 549.820 kb on - strand, within ABZR87_RS02585at 549.820 kb on - strand, within ABZR87_RS02585at 549.828 kb on + strand, within ABZR87_RS02585at 549.829 kb on - strand, within ABZR87_RS02585at 549.835 kb on + strand, within ABZR87_RS02585at 549.925 kb on + strand, within ABZR87_RS02585at 549.925 kb on + strand, within ABZR87_RS02585at 549.926 kb on - strand, within ABZR87_RS02585at 549.926 kb on - strand, within ABZR87_RS02585at 550.139 kb on - strand, within ABZR87_RS02585at 550.152 kb on + strand, within ABZR87_RS02585at 550.152 kb on + strand, within ABZR87_RS02585at 550.152 kb on + strand, within ABZR87_RS02585at 550.152 kb on + strand, within ABZR87_RS02585at 550.153 kb on - strand, within ABZR87_RS02585at 550.153 kb on - strand, within ABZR87_RS02585at 550.153 kb on - strand, within ABZR87_RS02585at 550.249 kb on + strand, within ABZR87_RS02585at 550.249 kb on + strand, within ABZR87_RS02585at 550.249 kb on + strand, within ABZR87_RS02585at 550.321 kb on - strand, within ABZR87_RS02585at 550.381 kb on - strand, within ABZR87_RS02585at 550.590 kb on + strand, within ABZR87_RS02585at 550.590 kb on + strand, within ABZR87_RS02585at 550.590 kb on + strand, within ABZR87_RS02585at 550.590 kb on + strand, within ABZR87_RS02585at 550.591 kb on - strand, within ABZR87_RS02585at 550.591 kb on - strand, within ABZR87_RS02585at 550.713 kb on + strandat 550.714 kb on - strandat 550.905 kb on + strand, within ABZR87_RS02590at 550.905 kb on + strand, within ABZR87_RS02590at 550.905 kb on + strand, within ABZR87_RS02590at 550.906 kb on - strand, within ABZR87_RS02590at 550.906 kb on - strand, within ABZR87_RS02590at 550.906 kb on - strand, within ABZR87_RS02590at 551.228 kb on + strand, within ABZR87_RS02590at 551.228 kb on + strand, within ABZR87_RS02590at 551.228 kb on + strand, within ABZR87_RS02590at 551.228 kb on + strand, within ABZR87_RS02590at 551.229 kb on - strand, within ABZR87_RS02590at 551.314 kb on + strand, within ABZR87_RS02590at 551.315 kb on - strand, within ABZR87_RS02590at 551.315 kb on - strand, within ABZR87_RS02590at 551.396 kb on + strand, within ABZR87_RS02590at 551.396 kb on + strand, within ABZR87_RS02590at 551.397 kb on - strand, within ABZR87_RS02590at 551.397 kb on - strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.548 kb on + strand, within ABZR87_RS02590at 551.549 kb on - strand, within ABZR87_RS02590at 551.549 kb on - strand, within ABZR87_RS02590at 551.549 kb on - strand, within ABZR87_RS02590at 551.549 kb on - strand, within ABZR87_RS02590at 551.549 kb on - strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
remove
548,870 + ABZR87_RS02580 0.23 -0.2
548,870 + ABZR87_RS02580 0.23 -0.6
548,870 + ABZR87_RS02580 0.23 +0.9
548,871 - ABZR87_RS02580 0.23 +0.9
548,871 - ABZR87_RS02580 0.23 +0.3
548,871 - ABZR87_RS02580 0.23 -1.2
548,948 + ABZR87_RS02580 0.34 -0.7
548,949 - ABZR87_RS02580 0.34 +0.3
548,949 - ABZR87_RS02580 0.34 +1.0
548,949 - ABZR87_RS02580 0.34 -3.1
548,949 - ABZR87_RS02580 0.34 +0.5
548,955 + ABZR87_RS02580 0.35 +0.1
548,955 + ABZR87_RS02580 0.35 +0.1
548,955 + ABZR87_RS02580 0.35 +0.5
548,955 + ABZR87_RS02580 0.35 -1.5
548,956 - ABZR87_RS02580 0.35 +0.3
548,956 - ABZR87_RS02580 0.35 -0.2
548,956 - ABZR87_RS02580 0.35 +0.6
548,956 - ABZR87_RS02580 0.35 +1.1
548,998 - ABZR87_RS02580 0.41 -0.2
549,096 + ABZR87_RS02580 0.56 -0.1
549,097 - ABZR87_RS02580 0.56 -0.1
549,097 - ABZR87_RS02580 0.56 -0.2
549,129 + ABZR87_RS02580 0.61 -0.4
549,129 + ABZR87_RS02580 0.61 +0.1
549,130 - ABZR87_RS02580 0.61 -0.5
549,130 - ABZR87_RS02580 0.61 +0.1
549,150 + ABZR87_RS02580 0.64 -0.8
549,150 + ABZR87_RS02580 0.64 +0.6
549,150 + ABZR87_RS02580 0.64 +0.2
549,150 + ABZR87_RS02580 0.64 +0.2
549,150 + ABZR87_RS02580 0.64 -0.4
549,150 + ABZR87_RS02580 0.64 -0.3
549,150 + ABZR87_RS02580 0.64 -1.1
549,150 + ABZR87_RS02580 0.64 -1.0
549,150 + ABZR87_RS02580 0.64 -0.5
549,151 - ABZR87_RS02580 0.64 -0.8
549,151 - ABZR87_RS02580 0.64 +0.0
549,151 - ABZR87_RS02580 0.64 -0.0
549,209 + ABZR87_RS02580 0.73 -0.4
549,209 + ABZR87_RS02580 0.73 +0.1
549,209 + ABZR87_RS02580 0.73 +0.5
549,210 - ABZR87_RS02580 0.73 -0.1
549,210 - ABZR87_RS02580 0.73 -1.1
549,210 - ABZR87_RS02580 0.73 +0.3
549,210 - ABZR87_RS02580 0.73 +0.6
549,210 - ABZR87_RS02580 0.73 +0.6
549,249 + ABZR87_RS02580 0.79 -0.4
549,270 + ABZR87_RS02580 0.82 -0.0
549,271 - ABZR87_RS02580 0.82 -0.1
549,271 - ABZR87_RS02580 0.82 -0.8
549,271 - ABZR87_RS02580 0.82 -0.2
549,391 - -0.1
549,391 - -0.2
549,434 + +0.1
549,434 + -0.4
549,434 + -0.1
549,546 - -0.3
549,573 + +2.2
549,573 + -1.0
549,573 + -0.4
549,573 + -0.1
549,573 + +0.2
549,574 - -0.3
549,585 + +0.7
549,654 + -0.2
549,678 + -0.4
549,678 + -0.0
549,678 + +0.1
549,678 + -0.7
549,678 + +0.9
549,679 - +0.2
549,679 - +0.9
549,679 - -0.9
549,679 - -0.0
549,679 - +0.4
549,679 - +0.4
549,679 - +0.6
549,679 - -0.4
549,726 + ABZR87_RS02585 0.10 +1.3
549,727 - ABZR87_RS02585 0.10 +0.4
549,727 - ABZR87_RS02585 0.10 +0.9
549,819 + ABZR87_RS02585 0.18 +0.5
549,819 + ABZR87_RS02585 0.18 -0.1
549,819 + ABZR87_RS02585 0.18 -0.4
549,820 - ABZR87_RS02585 0.18 +0.9
549,820 - ABZR87_RS02585 0.18 +0.8
549,828 + ABZR87_RS02585 0.19 -0.2
549,829 - ABZR87_RS02585 0.19 +0.4
549,835 + ABZR87_RS02585 0.19 +0.0
549,925 + ABZR87_RS02585 0.27 +0.3
549,925 + ABZR87_RS02585 0.27 -0.9
549,926 - ABZR87_RS02585 0.27 +1.3
549,926 - ABZR87_RS02585 0.27 +0.3
550,139 - ABZR87_RS02585 0.46 +0.2
550,152 + ABZR87_RS02585 0.47 +0.3
550,152 + ABZR87_RS02585 0.47 +1.3
550,152 + ABZR87_RS02585 0.47 +0.4
550,152 + ABZR87_RS02585 0.47 +0.1
550,153 - ABZR87_RS02585 0.47 +0.1
550,153 - ABZR87_RS02585 0.47 -0.2
550,153 - ABZR87_RS02585 0.47 +1.3
550,249 + ABZR87_RS02585 0.55 +0.3
550,249 + ABZR87_RS02585 0.55 -0.4
550,249 + ABZR87_RS02585 0.55 -0.4
550,321 - ABZR87_RS02585 0.61 +1.3
550,381 - ABZR87_RS02585 0.66 -0.2
550,590 + ABZR87_RS02585 0.84 +0.8
550,590 + ABZR87_RS02585 0.84 -0.7
550,590 + ABZR87_RS02585 0.84 +0.6
550,590 + ABZR87_RS02585 0.84 -0.8
550,591 - ABZR87_RS02585 0.84 +0.5
550,591 - ABZR87_RS02585 0.84 +0.3
550,713 + +0.4
550,714 - -0.1
550,905 + ABZR87_RS02590 0.10 -3.2
550,905 + ABZR87_RS02590 0.10 -3.7
550,905 + ABZR87_RS02590 0.10 -0.5
550,906 - ABZR87_RS02590 0.10 -2.6
550,906 - ABZR87_RS02590 0.10 -3.8
550,906 - ABZR87_RS02590 0.10 -2.6
551,228 + ABZR87_RS02590 0.39 -3.1
551,228 + ABZR87_RS02590 0.39 -2.0
551,228 + ABZR87_RS02590 0.39 -1.8
551,228 + ABZR87_RS02590 0.39 -2.6
551,229 - ABZR87_RS02590 0.39 -2.8
551,314 + ABZR87_RS02590 0.47 -3.8
551,315 - ABZR87_RS02590 0.47 -1.0
551,315 - ABZR87_RS02590 0.47 -1.5
551,396 + ABZR87_RS02590 0.54 -2.2
551,396 + ABZR87_RS02590 0.54 -1.2
551,397 - ABZR87_RS02590 0.54 -0.0
551,397 - ABZR87_RS02590 0.54 -2.2
551,548 + ABZR87_RS02590 0.68 -2.4
551,548 + ABZR87_RS02590 0.68 -1.5
551,548 + ABZR87_RS02590 0.68 -2.8
551,548 + ABZR87_RS02590 0.68 -3.5
551,548 + ABZR87_RS02590 0.68 -2.0
551,548 + ABZR87_RS02590 0.68 -3.0
551,549 - ABZR87_RS02590 0.68 -4.0
551,549 - ABZR87_RS02590 0.68 -0.2
551,549 - ABZR87_RS02590 0.68 -3.1
551,549 - ABZR87_RS02590 0.68 -2.0
551,549 - ABZR87_RS02590 0.68 -1.5
551,755 + ABZR87_RS02590 0.87 -1.9
551,755 + ABZR87_RS02590 0.87 -4.0
551,755 + ABZR87_RS02590 0.87 -2.7
551,755 + ABZR87_RS02590 0.87 -0.7
551,755 + ABZR87_RS02590 0.87 -2.5
551,755 + ABZR87_RS02590 0.87 -4.2
551,755 + ABZR87_RS02590 0.87 -3.2
551,756 - ABZR87_RS02590 0.87 -4.5
551,756 - ABZR87_RS02590 0.87 -3.4
551,756 - ABZR87_RS02590 0.87 -2.4
551,756 - ABZR87_RS02590 0.87 -3.7
551,756 - ABZR87_RS02590 0.87 -1.7
551,756 - ABZR87_RS02590 0.87 -4.5
551,756 - ABZR87_RS02590 0.87 -4.0

Or see this region's nucleotide sequence