Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00010

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00005 and ABZR87_RS00010 are separated by 95 nucleotidesABZR87_RS00010 and ABZR87_RS00015 are separated by 2 nucleotides ABZR87_RS00005: ABZR87_RS00005 - hypothetical protein, at 524 to 1,066 _RS00005 ABZR87_RS00010: ABZR87_RS00010 - translocation/assembly module TamB domain-containing protein, at 1,162 to 5,076 _RS00010 ABZR87_RS00015: ABZR87_RS00015 - autotransporter assembly complex family protein, at 5,079 to 6,866 _RS00015 Position (kb) 1 2 3 4 5 6Strain fitness (log2 ratio) -1 0 1 2at 0.566 kb on - strandat 0.661 kb on + strand, within ABZR87_RS00005at 0.835 kb on - strand, within ABZR87_RS00005at 1.128 kb on + strandat 1.128 kb on + strandat 1.163 kb on + strandat 1.164 kb on - strandat 1.289 kb on + strandat 1.289 kb on + strandat 1.290 kb on - strandat 1.359 kb on + strandat 1.359 kb on + strandat 1.360 kb on - strandat 1.490 kb on + strandat 1.491 kb on - strandat 1.585 kb on + strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.586 kb on - strand, within ABZR87_RS00010at 1.608 kb on + strand, within ABZR87_RS00010at 1.706 kb on + strand, within ABZR87_RS00010at 1.706 kb on + strand, within ABZR87_RS00010at 1.707 kb on - strand, within ABZR87_RS00010at 1.727 kb on + strand, within ABZR87_RS00010at 1.727 kb on + strand, within ABZR87_RS00010at 1.727 kb on + strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 1.728 kb on - strand, within ABZR87_RS00010at 2.276 kb on + strand, within ABZR87_RS00010at 2.276 kb on + strand, within ABZR87_RS00010at 2.277 kb on - strand, within ABZR87_RS00010at 2.277 kb on - strand, within ABZR87_RS00010at 2.647 kb on + strand, within ABZR87_RS00010at 2.647 kb on + strand, within ABZR87_RS00010at 2.647 kb on + strand, within ABZR87_RS00010at 2.648 kb on - strand, within ABZR87_RS00010at 2.648 kb on - strand, within ABZR87_RS00010at 3.251 kb on + strand, within ABZR87_RS00010at 3.251 kb on + strand, within ABZR87_RS00010at 3.251 kb on + strand, within ABZR87_RS00010at 3.525 kb on - strand, within ABZR87_RS00010at 4.107 kb on + strand, within ABZR87_RS00010at 4.317 kb on + strand, within ABZR87_RS00010at 4.317 kb on + strand, within ABZR87_RS00010at 4.318 kb on - strand, within ABZR87_RS00010at 4.701 kb on - strandat 4.701 kb on - strandat 4.701 kb on - strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.850 kb on + strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.851 kb on - strandat 4.949 kb on - strandat 5.013 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.134 kb on + strandat 5.135 kb on - strandat 5.288 kb on - strand, within ABZR87_RS00015at 5.466 kb on + strand, within ABZR87_RS00015at 5.467 kb on - strand, within ABZR87_RS00015at 5.513 kb on + strand, within ABZR87_RS00015at 5.513 kb on + strand, within ABZR87_RS00015at 5.515 kb on + strand, within ABZR87_RS00015at 5.516 kb on - strand, within ABZR87_RS00015at 5.516 kb on - strand, within ABZR87_RS00015at 5.695 kb on + strand, within ABZR87_RS00015at 5.695 kb on + strand, within ABZR87_RS00015at 5.698 kb on + strand, within ABZR87_RS00015at 5.698 kb on + strand, within ABZR87_RS00015at 5.699 kb on - strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.725 kb on + strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.726 kb on - strand, within ABZR87_RS00015at 5.764 kb on + strand, within ABZR87_RS00015at 5.764 kb on + strand, within ABZR87_RS00015at 5.765 kb on - strand, within ABZR87_RS00015at 5.812 kb on + strand, within ABZR87_RS00015at 5.820 kb on - strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.827 kb on + strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.828 kb on - strand, within ABZR87_RS00015at 5.835 kb on - strand, within ABZR87_RS00015at 5.978 kb on - strand, within ABZR87_RS00015

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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566 - +0.1
661 + ABZR87_RS00005 0.25 +0.9
835 - ABZR87_RS00005 0.57 +0.3
1,128 + +2.3
1,128 + +1.1
1,163 + +0.4
1,164 - +0.4
1,289 + +0.6
1,289 + +0.4
1,290 - +1.5
1,359 + +0.2
1,359 + +0.0
1,360 - +0.8
1,490 + +0.6
1,491 - +1.0
1,585 + ABZR87_RS00010 0.11 +0.6
1,586 - ABZR87_RS00010 0.11 +0.8
1,586 - ABZR87_RS00010 0.11 +0.7
1,586 - ABZR87_RS00010 0.11 +0.5
1,586 - ABZR87_RS00010 0.11 +2.6
1,586 - ABZR87_RS00010 0.11 +0.4
1,608 + ABZR87_RS00010 0.11 +1.0
1,706 + ABZR87_RS00010 0.14 +0.8
1,706 + ABZR87_RS00010 0.14 +1.2
1,707 - ABZR87_RS00010 0.14 +1.1
1,727 + ABZR87_RS00010 0.14 -0.6
1,727 + ABZR87_RS00010 0.14 +0.3
1,727 + ABZR87_RS00010 0.14 -0.2
1,728 - ABZR87_RS00010 0.14 +0.8
1,728 - ABZR87_RS00010 0.14 +0.3
1,728 - ABZR87_RS00010 0.14 -1.0
1,728 - ABZR87_RS00010 0.14 +1.5
2,276 + ABZR87_RS00010 0.28 +1.3
2,276 + ABZR87_RS00010 0.28 +1.2
2,277 - ABZR87_RS00010 0.28 -0.2
2,277 - ABZR87_RS00010 0.28 +0.6
2,647 + ABZR87_RS00010 0.38 +0.7
2,647 + ABZR87_RS00010 0.38 -0.6
2,647 + ABZR87_RS00010 0.38 +0.8
2,648 - ABZR87_RS00010 0.38 +1.0
2,648 - ABZR87_RS00010 0.38 +0.2
3,251 + ABZR87_RS00010 0.53 +0.5
3,251 + ABZR87_RS00010 0.53 -0.7
3,251 + ABZR87_RS00010 0.53 +0.5
3,525 - ABZR87_RS00010 0.60 +0.5
4,107 + ABZR87_RS00010 0.75 +0.5
4,317 + ABZR87_RS00010 0.81 -0.5
4,317 + ABZR87_RS00010 0.81 +0.7
4,318 - ABZR87_RS00010 0.81 +0.9
4,701 - +0.2
4,701 - +0.4
4,701 - +0.1
4,850 + +0.2
4,850 + +1.0
4,850 + +1.0
4,850 + +0.4
4,850 + +0.1
4,850 + +0.0
4,850 + +0.9
4,851 - +0.7
4,851 - -0.3
4,851 - +0.0
4,851 - +0.4
4,851 - +0.5
4,949 - +1.5
5,013 + +0.5
5,134 + +0.8
5,134 + +2.5
5,134 + +0.4
5,134 + +0.7
5,135 - +0.3
5,288 - ABZR87_RS00015 0.12 +0.4
5,466 + ABZR87_RS00015 0.22 +0.6
5,467 - ABZR87_RS00015 0.22 +0.4
5,513 + ABZR87_RS00015 0.24 +0.8
5,513 + ABZR87_RS00015 0.24 +2.6
5,515 + ABZR87_RS00015 0.24 +0.2
5,516 - ABZR87_RS00015 0.24 +0.1
5,516 - ABZR87_RS00015 0.24 +0.5
5,695 + ABZR87_RS00015 0.34 +0.2
5,695 + ABZR87_RS00015 0.34 +0.8
5,698 + ABZR87_RS00015 0.35 +0.6
5,698 + ABZR87_RS00015 0.35 +1.0
5,699 - ABZR87_RS00015 0.35 +0.7
5,725 + ABZR87_RS00015 0.36 +0.7
5,725 + ABZR87_RS00015 0.36 +0.8
5,725 + ABZR87_RS00015 0.36 +0.3
5,725 + ABZR87_RS00015 0.36 -0.2
5,725 + ABZR87_RS00015 0.36 +0.2
5,725 + ABZR87_RS00015 0.36 +0.6
5,725 + ABZR87_RS00015 0.36 +0.0
5,725 + ABZR87_RS00015 0.36 +2.0
5,725 + ABZR87_RS00015 0.36 -0.1
5,725 + ABZR87_RS00015 0.36 +0.5
5,725 + ABZR87_RS00015 0.36 -0.3
5,726 - ABZR87_RS00015 0.36 -0.6
5,726 - ABZR87_RS00015 0.36 +0.5
5,726 - ABZR87_RS00015 0.36 +1.3
5,726 - ABZR87_RS00015 0.36 -0.9
5,726 - ABZR87_RS00015 0.36 -0.1
5,726 - ABZR87_RS00015 0.36 +0.5
5,726 - ABZR87_RS00015 0.36 +0.5
5,726 - ABZR87_RS00015 0.36 -0.3
5,726 - ABZR87_RS00015 0.36 +0.3
5,726 - ABZR87_RS00015 0.36 +0.7
5,726 - ABZR87_RS00015 0.36 +0.1
5,764 + ABZR87_RS00015 0.38 -0.2
5,764 + ABZR87_RS00015 0.38 +0.5
5,765 - ABZR87_RS00015 0.38 -0.5
5,812 + ABZR87_RS00015 0.41 +0.8
5,820 - ABZR87_RS00015 0.41 +0.3
5,827 + ABZR87_RS00015 0.42 +1.4
5,827 + ABZR87_RS00015 0.42 +1.8
5,827 + ABZR87_RS00015 0.42 +1.4
5,827 + ABZR87_RS00015 0.42 +0.1
5,827 + ABZR87_RS00015 0.42 +0.9
5,828 - ABZR87_RS00015 0.42 +0.5
5,828 - ABZR87_RS00015 0.42 +0.6
5,828 - ABZR87_RS00015 0.42 +1.1
5,828 - ABZR87_RS00015 0.42 +0.7
5,835 - ABZR87_RS00015 0.42 +0.5
5,978 - ABZR87_RS00015 0.50 +0.8

Or see this region's nucleotide sequence