Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS24230

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS24225 and RS_RS24230 are separated by 324 nucleotidesRS_RS24230 and RS_RS26465 are separated by 142 nucleotidesRS_RS26465 and RS_RS24235 are separated by 156 nucleotides RS_RS24225: RS_RS24225 - aldo/keto reductase, at 1,852,287 to 1,853,291 _RS24225 RS_RS24230: RS_RS24230 - hypothetical protein, at 1,853,616 to 1,853,810 _RS24230 RS_RS26465: RS_RS26465 - acyl-CoA dehydrogenase, at 1,853,953 to 1,854,179 _RS26465 RS_RS24235: RS_RS24235 - type III effector protein, at 1,854,336 to 1,855,445 _RS24235 Position (kb) 1853 1854Strain fitness (log2 ratio) -1 0 1at 1852.621 kb on - strand, within RS_RS24225at 1852.621 kb on - strand, within RS_RS24225at 1852.621 kb on - strand, within RS_RS24225at 1852.621 kb on - strand, within RS_RS24225at 1852.621 kb on - strand, within RS_RS24225at 1852.635 kb on + strand, within RS_RS24225at 1852.636 kb on - strand, within RS_RS24225at 1852.719 kb on + strand, within RS_RS24225at 1852.720 kb on - strand, within RS_RS24225at 1852.720 kb on - strand, within RS_RS24225at 1852.873 kb on - strand, within RS_RS24225at 1852.893 kb on + strand, within RS_RS24225at 1852.929 kb on + strand, within RS_RS24225at 1852.929 kb on + strand, within RS_RS24225at 1852.929 kb on + strand, within RS_RS24225at 1852.930 kb on - strand, within RS_RS24225at 1853.157 kb on + strand, within RS_RS24225at 1853.157 kb on + strand, within RS_RS24225at 1853.158 kb on - strand, within RS_RS24225at 1853.158 kb on - strand, within RS_RS24225at 1853.247 kb on + strandat 1853.247 kb on + strandat 1853.248 kb on - strandat 1853.758 kb on + strand, within RS_RS24230at 1853.758 kb on + strand, within RS_RS24230at 1853.826 kb on - strandat 1854.063 kb on + strand, within RS_RS26465at 1854.063 kb on + strand, within RS_RS26465at 1854.063 kb on + strand, within RS_RS26465at 1854.064 kb on - strand, within RS_RS26465at 1854.064 kb on - strand, within RS_RS26465at 1854.064 kb on - strand, within RS_RS26465at 1854.064 kb on - strand, within RS_RS26465at 1854.457 kb on + strand, within RS_RS24235at 1854.458 kb on - strand, within RS_RS24235at 1854.458 kb on - strand, within RS_RS24235at 1854.493 kb on + strand, within RS_RS24235at 1854.494 kb on - strand, within RS_RS24235at 1854.494 kb on - strand, within RS_RS24235at 1854.494 kb on - strand, within RS_RS24235

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
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1,852,621 - RS_RS24225 0.33 -0.2
1,852,621 - RS_RS24225 0.33 +0.1
1,852,621 - RS_RS24225 0.33 +0.2
1,852,621 - RS_RS24225 0.33 +0.3
1,852,621 - RS_RS24225 0.33 +0.1
1,852,635 + RS_RS24225 0.35 +0.7
1,852,636 - RS_RS24225 0.35 -0.6
1,852,719 + RS_RS24225 0.43 +0.8
1,852,720 - RS_RS24225 0.43 +0.4
1,852,720 - RS_RS24225 0.43 -1.1
1,852,873 - RS_RS24225 0.58 -0.4
1,852,893 + RS_RS24225 0.60 -0.2
1,852,929 + RS_RS24225 0.64 -0.3
1,852,929 + RS_RS24225 0.64 -0.4
1,852,929 + RS_RS24225 0.64 -0.4
1,852,930 - RS_RS24225 0.64 -0.2
1,853,157 + RS_RS24225 0.87 -0.2
1,853,157 + RS_RS24225 0.87 +0.1
1,853,158 - RS_RS24225 0.87 +0.3
1,853,158 - RS_RS24225 0.87 -0.4
1,853,247 + +0.2
1,853,247 + -0.1
1,853,248 - -0.0
1,853,758 + RS_RS24230 0.73 +0.5
1,853,758 + RS_RS24230 0.73 -0.6
1,853,826 - +0.8
1,854,063 + RS_RS26465 0.48 -0.4
1,854,063 + RS_RS26465 0.48 +0.9
1,854,063 + RS_RS26465 0.48 +0.8
1,854,064 - RS_RS26465 0.49 -0.8
1,854,064 - RS_RS26465 0.49 -0.5
1,854,064 - RS_RS26465 0.49 +0.1
1,854,064 - RS_RS26465 0.49 -0.3
1,854,457 + RS_RS24235 0.11 +0.3
1,854,458 - RS_RS24235 0.11 -0.5
1,854,458 - RS_RS24235 0.11 -0.2
1,854,493 + RS_RS24235 0.14 +0.4
1,854,494 - RS_RS24235 0.14 -0.2
1,854,494 - RS_RS24235 0.14 +0.0
1,854,494 - RS_RS24235 0.14 -0.3

Or see this region's nucleotide sequence