Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04615 and RS_RS04620 are separated by 1 nucleotides RS_RS04620 and RS_RS04625 are separated by 204 nucleotides RS_RS04625 and RS_RS04630 are separated by 119 nucleotides
RS_RS04615: RS_RS04615 - radical SAM protein, at 980,326 to 981,453
_RS04615
RS_RS04620: RS_RS04620 - NINE protein, at 981,455 to 981,910
_RS04620
RS_RS04625: RS_RS04625 - hypothetical protein, at 982,115 to 982,297
_RS04625
RS_RS04630: RS_RS04630 - hypothetical protein, at 982,417 to 982,821
_RS04630
Position (kb) 981
982 Strain fitness (log2 ratio) -1
0
1 at 980.593 kb on + strand, within RS_RS04615 at 980.593 kb on + strand, within RS_RS04615 at 980.593 kb on + strand, within RS_RS04615 at 980.758 kb on + strand, within RS_RS04615 at 980.758 kb on + strand, within RS_RS04615 at 980.759 kb on - strand, within RS_RS04615 at 981.128 kb on - strand, within RS_RS04615 at 981.129 kb on + strand, within RS_RS04615 at 981.129 kb on + strand, within RS_RS04615 at 981.130 kb on - strand, within RS_RS04615 at 981.251 kb on - strand, within RS_RS04615 at 981.320 kb on - strand, within RS_RS04615 at 981.349 kb on + strand at 981.350 kb on - strand at 981.350 kb on - strand at 981.573 kb on - strand, within RS_RS04620 at 981.651 kb on + strand, within RS_RS04620 at 981.652 kb on - strand, within RS_RS04620 at 981.822 kb on + strand, within RS_RS04620 at 981.904 kb on + strand at 981.904 kb on + strand at 981.904 kb on + strand at 981.904 kb on + strand at 981.904 kb on + strand at 981.904 kb on + strand at 981.905 kb on - strand at 981.957 kb on + strand at 982.051 kb on - strand at 982.117 kb on - strand at 982.348 kb on + strand at 982.349 kb on - strand at 982.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 980,593 + RS_RS04615 0.24 +0.3 980,593 + RS_RS04615 0.24 +1.7 980,593 + RS_RS04615 0.24 -0.2 980,758 + RS_RS04615 0.38 -0.3 980,758 + RS_RS04615 0.38 +0.4 980,759 - RS_RS04615 0.38 -0.1 981,128 - RS_RS04615 0.71 +0.1 981,129 + RS_RS04615 0.71 +0.2 981,129 + RS_RS04615 0.71 -0.5 981,130 - RS_RS04615 0.71 +0.1 981,251 - RS_RS04615 0.82 +0.3 981,320 - RS_RS04615 0.88 -0.4 981,349 + -0.2 981,350 - +0.0 981,350 - -0.0 981,573 - RS_RS04620 0.26 -0.5 981,651 + RS_RS04620 0.43 +0.1 981,652 - RS_RS04620 0.43 +0.7 981,822 + RS_RS04620 0.80 +0.0 981,904 + -0.2 981,904 + +0.4 981,904 + -0.9 981,904 + +0.7 981,904 + -0.2 981,904 + -0.9 981,905 - +0.0 981,957 + +0.2 982,051 - +0.2 982,117 - -0.1 982,348 + +0.6 982,349 - -0.2 982,349 - -0.5
Or see this region's nucleotide sequence