Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00850 and RS_RS00855 are separated by 3 nucleotides RS_RS00855 and RS_RS00860 are separated by 198 nucleotides
RS_RS00850: RS_RS00850 - FAD-binding oxidoreductase, at 193,131 to 194,447
_RS00850
RS_RS00855: RS_RS00855 - membrane protein, at 194,451 to 195,875
_RS00855
RS_RS00860: RS_RS00860 - 2-dehydropantoate 2-reductase, at 196,074 to 197,015
_RS00860
Position (kb) 194
195
196 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 193.573 kb on + strand, within RS_RS00850 at 193.583 kb on - strand, within RS_RS00850 at 193.583 kb on - strand, within RS_RS00850 at 193.628 kb on - strand, within RS_RS00850 at 193.628 kb on - strand, within RS_RS00850 at 193.810 kb on + strand, within RS_RS00850 at 193.810 kb on + strand, within RS_RS00850 at 193.810 kb on + strand, within RS_RS00850 at 194.123 kb on - strand, within RS_RS00850 at 194.295 kb on - strand, within RS_RS00850 at 194.420 kb on - strand at 194.472 kb on - strand at 194.515 kb on - strand at 194.584 kb on + strand at 194.585 kb on - strand at 194.585 kb on - strand at 194.658 kb on - strand, within RS_RS00855 at 194.659 kb on + strand, within RS_RS00855 at 194.659 kb on + strand, within RS_RS00855 at 194.660 kb on - strand, within RS_RS00855 at 194.660 kb on - strand, within RS_RS00855 at 194.795 kb on - strand, within RS_RS00855 at 194.902 kb on + strand, within RS_RS00855 at 194.903 kb on - strand, within RS_RS00855 at 194.977 kb on + strand, within RS_RS00855 at 194.977 kb on + strand, within RS_RS00855 at 194.977 kb on + strand, within RS_RS00855 at 194.977 kb on + strand, within RS_RS00855 at 194.981 kb on - strand, within RS_RS00855 at 195.166 kb on + strand, within RS_RS00855 at 195.167 kb on - strand, within RS_RS00855 at 195.409 kb on + strand, within RS_RS00855 at 195.409 kb on + strand, within RS_RS00855 at 195.410 kb on - strand, within RS_RS00855 at 195.410 kb on - strand, within RS_RS00855 at 195.677 kb on - strand, within RS_RS00855 at 195.689 kb on + strand, within RS_RS00855 at 195.769 kb on + strand at 195.770 kb on - strand at 195.770 kb on - strand at 195.797 kb on - strand at 195.834 kb on + strand at 195.834 kb on + strand at 195.834 kb on + strand at 195.834 kb on + strand at 195.835 kb on - strand at 195.835 kb on - strand at 195.908 kb on + strand at 195.909 kb on - strand at 195.997 kb on + strand at 195.998 kb on - strand at 195.998 kb on - strand at 195.998 kb on - strand at 195.998 kb on - strand at 196.000 kb on + strand at 196.000 kb on + strand at 196.000 kb on + strand at 196.000 kb on + strand at 196.000 kb on + strand at 196.000 kb on + strand at 196.000 kb on + strand at 196.001 kb on - strand at 196.001 kb on - strand at 196.001 kb on - strand at 196.001 kb on - strand at 196.001 kb on - strand at 196.001 kb on - strand at 196.075 kb on + strand at 196.075 kb on + strand at 196.109 kb on - strand at 196.347 kb on + strand, within RS_RS00860 at 196.348 kb on + strand, within RS_RS00860 at 196.348 kb on + strand, within RS_RS00860 at 196.349 kb on - strand, within RS_RS00860 at 196.349 kb on - strand, within RS_RS00860 at 196.349 kb on - strand, within RS_RS00860 at 196.777 kb on + strand, within RS_RS00860 at 196.777 kb on + strand, within RS_RS00860
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 193,573 + RS_RS00850 0.34 -1.5 193,583 - RS_RS00850 0.34 -0.8 193,583 - RS_RS00850 0.34 -2.6 193,628 - RS_RS00850 0.38 -0.4 193,628 - RS_RS00850 0.38 -1.4 193,810 + RS_RS00850 0.52 -0.8 193,810 + RS_RS00850 0.52 -1.0 193,810 + RS_RS00850 0.52 +1.6 194,123 - RS_RS00850 0.75 -1.4 194,295 - RS_RS00850 0.88 -0.4 194,420 - -1.2 194,472 - -0.6 194,515 - -1.1 194,584 + -0.1 194,585 - -0.3 194,585 - -0.4 194,658 - RS_RS00855 0.15 +1.4 194,659 + RS_RS00855 0.15 +0.1 194,659 + RS_RS00855 0.15 +0.3 194,660 - RS_RS00855 0.15 +0.4 194,660 - RS_RS00855 0.15 +0.4 194,795 - RS_RS00855 0.24 -0.0 194,902 + RS_RS00855 0.32 +0.5 194,903 - RS_RS00855 0.32 +0.8 194,977 + RS_RS00855 0.37 -1.0 194,977 + RS_RS00855 0.37 +1.4 194,977 + RS_RS00855 0.37 +1.4 194,977 + RS_RS00855 0.37 -0.6 194,981 - RS_RS00855 0.37 -0.4 195,166 + RS_RS00855 0.50 +0.0 195,167 - RS_RS00855 0.50 -0.7 195,409 + RS_RS00855 0.67 +0.1 195,409 + RS_RS00855 0.67 +0.6 195,410 - RS_RS00855 0.67 -1.7 195,410 - RS_RS00855 0.67 +0.5 195,677 - RS_RS00855 0.86 -0.2 195,689 + RS_RS00855 0.87 +1.8 195,769 + -1.4 195,770 - -0.6 195,770 - -0.4 195,797 - -0.2 195,834 + +3.4 195,834 + +0.5 195,834 + -0.4 195,834 + -0.1 195,835 - -1.4 195,835 - -0.1 195,908 + -0.1 195,909 - +0.0 195,997 + -0.1 195,998 - +1.2 195,998 - +0.3 195,998 - -0.1 195,998 - +1.0 196,000 + +0.4 196,000 + +0.2 196,000 + -0.1 196,000 + -0.6 196,000 + +0.8 196,000 + -0.1 196,000 + -0.6 196,001 - -0.5 196,001 - -0.2 196,001 - +0.6 196,001 - -1.7 196,001 - -0.4 196,001 - -0.8 196,075 + -0.2 196,075 + +0.1 196,109 - -0.2 196,347 + RS_RS00860 0.29 -0.2 196,348 + RS_RS00860 0.29 +0.0 196,348 + RS_RS00860 0.29 -0.4 196,349 - RS_RS00860 0.29 +0.5 196,349 - RS_RS00860 0.29 +0.3 196,349 - RS_RS00860 0.29 +2.4 196,777 + RS_RS00860 0.75 +0.0 196,777 + RS_RS00860 0.75 +0.4
Or see this region's nucleotide sequence