Experiment: KB with L-alliin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3532 and Psyr_3533 are separated by 1 nucleotides Psyr_3533 and Psyr_3534 are separated by 162 nucleotides Psyr_3534 and Psyr_3535 are separated by 117 nucleotides Psyr_3535 and Psyr_3536 overlap by 31 nucleotides
Psyr_3532: Psyr_3532 - PAS, at 4,209,228 to 4,211,303
_3532
Psyr_3533: Psyr_3533 - conserved hypothetical protein, at 4,211,305 to 4,211,628
_3533
Psyr_3534: Psyr_3534 - Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer, at 4,211,791 to 4,213,680
_3534
Psyr_3535: Psyr_3535 - conserved hypothetical protein, at 4,213,798 to 4,214,592
_3535
Psyr_3536: Psyr_3536 - hypothetical protein, at 4,214,562 to 4,214,981
_3536
Position (kb) 4211
4212
4213
4214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4210.829 kb on - strand, within Psyr_3532 at 4210.829 kb on - strand, within Psyr_3532 at 4210.829 kb on - strand, within Psyr_3532 at 4210.934 kb on - strand, within Psyr_3532 at 4210.989 kb on + strand, within Psyr_3532 at 4211.074 kb on + strand, within Psyr_3532 at 4211.074 kb on + strand, within Psyr_3532 at 4211.074 kb on + strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.075 kb on - strand, within Psyr_3532 at 4211.332 kb on + strand at 4211.332 kb on + strand at 4211.333 kb on - strand at 4211.599 kb on + strand at 4211.600 kb on - strand at 4211.600 kb on - strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.684 kb on - strand at 4211.684 kb on - strand at 4211.684 kb on - strand at 4211.684 kb on - strand at 4211.684 kb on - strand at 4211.686 kb on - strand at 4211.704 kb on - strand at 4211.704 kb on - strand at 4211.746 kb on - strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.750 kb on - strand at 4211.750 kb on - strand at 4211.750 kb on - strand at 4211.750 kb on - strand at 4211.750 kb on - strand at 4211.775 kb on - strand at 4211.817 kb on + strand at 4211.865 kb on - strand at 4211.875 kb on + strand at 4211.875 kb on + strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.876 kb on - strand at 4211.885 kb on - strand at 4211.885 kb on - strand at 4211.964 kb on + strand at 4212.091 kb on + strand, within Psyr_3534 at 4212.091 kb on + strand, within Psyr_3534 at 4212.091 kb on + strand, within Psyr_3534 at 4212.092 kb on - strand, within Psyr_3534 at 4212.175 kb on + strand, within Psyr_3534 at 4212.175 kb on + strand, within Psyr_3534 at 4212.175 kb on + strand, within Psyr_3534 at 4212.296 kb on + strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.297 kb on - strand, within Psyr_3534 at 4212.569 kb on + strand, within Psyr_3534 at 4212.570 kb on - strand, within Psyr_3534 at 4212.821 kb on + strand, within Psyr_3534 at 4212.921 kb on + strand, within Psyr_3534 at 4212.921 kb on + strand, within Psyr_3534 at 4212.921 kb on + strand, within Psyr_3534 at 4212.922 kb on - strand, within Psyr_3534 at 4213.214 kb on + strand, within Psyr_3534 at 4213.214 kb on + strand, within Psyr_3534 at 4213.214 kb on + strand, within Psyr_3534 at 4213.215 kb on - strand, within Psyr_3534 at 4213.215 kb on - strand, within Psyr_3534 at 4213.215 kb on - strand, within Psyr_3534 at 4213.215 kb on - strand, within Psyr_3534 at 4213.570 kb on - strand at 4213.570 kb on - strand at 4213.589 kb on + strand at 4213.590 kb on - strand at 4213.729 kb on + strand at 4213.729 kb on + strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.730 kb on - strand at 4213.733 kb on + strand at 4213.768 kb on + strand at 4213.774 kb on + strand at 4213.872 kb on + strand at 4213.872 kb on + strand at 4213.873 kb on - strand at 4213.877 kb on + strand at 4213.877 kb on + strand at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.878 kb on - strand, within Psyr_3535 at 4213.906 kb on + strand, within Psyr_3535 at 4213.906 kb on + strand, within Psyr_3535 at 4213.907 kb on - strand, within Psyr_3535 at 4213.907 kb on - strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.933 kb on + strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.934 kb on - strand, within Psyr_3535 at 4213.987 kb on + strand, within Psyr_3535 at 4213.987 kb on + strand, within Psyr_3535 at 4213.987 kb on + strand, within Psyr_3535 at 4214.077 kb on + strand, within Psyr_3535 at 4214.077 kb on + strand, within Psyr_3535 at 4214.230 kb on + strand, within Psyr_3535 at 4214.230 kb on + strand, within Psyr_3535 at 4214.230 kb on + strand, within Psyr_3535 at 4214.231 kb on - strand, within Psyr_3535 at 4214.231 kb on - strand, within Psyr_3535 at 4214.231 kb on - strand, within Psyr_3535 at 4214.476 kb on + strand, within Psyr_3535 at 4214.477 kb on - strand, within Psyr_3535 at 4214.477 kb on - strand, within Psyr_3535 at 4214.525 kb on + strand at 4214.525 kb on + strand at 4214.525 kb on + strand at 4214.525 kb on + strand at 4214.563 kb on + strand at 4214.564 kb on - strand at 4214.574 kb on + strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.575 kb on - strand at 4214.646 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.674 kb on + strand, within Psyr_3536 at 4214.675 kb on - strand, within Psyr_3536
Per-strain Table
Position Strand Gene LocusTag Fraction KB with L-alliin 10 mM remove 4,210,829 - Psyr_3532 0.77 -0.7 4,210,829 - Psyr_3532 0.77 -0.5 4,210,829 - Psyr_3532 0.77 -0.4 4,210,934 - Psyr_3532 0.82 +2.3 4,210,989 + Psyr_3532 0.85 -1.2 4,211,074 + Psyr_3532 0.89 -0.8 4,211,074 + Psyr_3532 0.89 -0.1 4,211,074 + Psyr_3532 0.89 -1.8 4,211,075 - Psyr_3532 0.89 -0.3 4,211,075 - Psyr_3532 0.89 -2.6 4,211,075 - Psyr_3532 0.89 -1.1 4,211,075 - Psyr_3532 0.89 +1.4 4,211,075 - Psyr_3532 0.89 -0.4 4,211,075 - Psyr_3532 0.89 +0.0 4,211,075 - Psyr_3532 0.89 -1.5 4,211,075 - Psyr_3532 0.89 +0.5 4,211,075 - Psyr_3532 0.89 -1.5 4,211,075 - -0.6 4,211,075 - Psyr_3532 0.89 -0.1 4,211,075 - Psyr_3532 0.89 +0.5 4,211,075 - Psyr_3532 0.89 -0.5 4,211,332 + -1.1 4,211,332 + +1.0 4,211,333 - +0.1 4,211,599 + +0.4 4,211,600 - +0.1 4,211,600 - +1.0 4,211,683 + -0.6 4,211,683 + +0.6 4,211,683 + +0.5 4,211,683 + +1.0 4,211,683 + -0.5 4,211,683 + -1.3 4,211,683 + +0.2 4,211,683 + +1.0 4,211,683 + -0.8 4,211,684 - -0.3 4,211,684 - +3.0 4,211,684 - +0.6 4,211,684 - +0.4 4,211,684 - +0.3 4,211,686 - -0.5 4,211,704 - +1.0 4,211,704 - +1.1 4,211,746 - +0.6 4,211,749 + +1.6 4,211,749 + -0.0 4,211,749 + -0.0 4,211,749 + +0.0 4,211,749 + +0.1 4,211,749 + -0.9 4,211,750 - -1.3 4,211,750 - -1.0 4,211,750 - +1.1 4,211,750 - +2.8 4,211,750 - +0.9 4,211,775 - -1.2 4,211,817 + -1.4 4,211,865 - +1.1 4,211,875 + -1.1 4,211,875 + -0.4 4,211,876 - +0.2 4,211,876 - +0.2 4,211,876 - +2.4 4,211,876 - -1.0 4,211,876 - -3.0 4,211,876 - +0.6 4,211,876 - -0.2 4,211,876 - +0.5 4,211,885 - -0.9 4,211,885 - +1.0 4,211,964 + -0.9 4,212,091 + Psyr_3534 0.16 +1.0 4,212,091 + Psyr_3534 0.16 -1.3 4,212,091 + Psyr_3534 0.16 +3.0 4,212,092 - Psyr_3534 0.16 +0.1 4,212,175 + Psyr_3534 0.20 +0.5 4,212,175 + Psyr_3534 0.20 -2.0 4,212,175 + Psyr_3534 0.20 +1.2 4,212,296 + Psyr_3534 0.27 -0.9 4,212,297 - Psyr_3534 0.27 -0.8 4,212,297 - Psyr_3534 0.27 +0.3 4,212,297 - Psyr_3534 0.27 +0.8 4,212,297 - Psyr_3534 0.27 +1.0 4,212,297 - Psyr_3534 0.27 +0.4 4,212,297 - Psyr_3534 0.27 -2.0 4,212,569 + Psyr_3534 0.41 +0.4 4,212,570 - Psyr_3534 0.41 -0.3 4,212,821 + Psyr_3534 0.54 -0.4 4,212,921 + Psyr_3534 0.60 -0.4 4,212,921 + Psyr_3534 0.60 -0.7 4,212,921 + Psyr_3534 0.60 -0.9 4,212,922 - Psyr_3534 0.60 +1.6 4,213,214 + Psyr_3534 0.75 +0.3 4,213,214 + Psyr_3534 0.75 -1.9 4,213,214 + Psyr_3534 0.75 +0.7 4,213,215 - Psyr_3534 0.75 +1.2 4,213,215 - Psyr_3534 0.75 -1.5 4,213,215 - Psyr_3534 0.75 -0.9 4,213,215 - Psyr_3534 0.75 +0.6 4,213,570 - -0.2 4,213,570 - +0.9 4,213,589 + +0.8 4,213,590 - +1.0 4,213,729 + -0.2 4,213,729 + +0.4 4,213,730 - -1.2 4,213,730 - -0.6 4,213,730 - -0.7 4,213,730 - -0.6 4,213,730 - +0.4 4,213,730 - -0.1 4,213,730 - +0.7 4,213,730 - -0.1 4,213,733 + -0.2 4,213,768 + +1.7 4,213,774 + +1.3 4,213,872 + +0.8 4,213,872 + +1.8 4,213,873 - -0.5 4,213,877 + +0.7 4,213,877 + +2.6 4,213,878 - Psyr_3535 0.10 +0.4 4,213,878 - Psyr_3535 0.10 +0.0 4,213,878 - Psyr_3535 0.10 +0.7 4,213,878 - Psyr_3535 0.10 -0.7 4,213,878 - Psyr_3535 0.10 -0.0 4,213,878 - Psyr_3535 0.10 +1.0 4,213,878 - Psyr_3535 0.10 -0.1 4,213,878 - Psyr_3535 0.10 +1.9 4,213,906 + Psyr_3535 0.14 -0.5 4,213,906 + Psyr_3535 0.14 +0.5 4,213,907 - Psyr_3535 0.14 +0.1 4,213,907 - Psyr_3535 0.14 +0.2 4,213,933 + Psyr_3535 0.17 +1.1 4,213,933 + Psyr_3535 0.17 +2.0 4,213,933 + Psyr_3535 0.17 -0.3 4,213,933 + Psyr_3535 0.17 +0.3 4,213,933 + Psyr_3535 0.17 +0.9 4,213,933 + Psyr_3535 0.17 +1.2 4,213,933 + Psyr_3535 0.17 -0.4 4,213,933 + Psyr_3535 0.17 +0.5 4,213,934 - Psyr_3535 0.17 -2.0 4,213,934 - Psyr_3535 0.17 +1.2 4,213,934 - Psyr_3535 0.17 +0.7 4,213,934 - Psyr_3535 0.17 +0.3 4,213,934 - Psyr_3535 0.17 +0.3 4,213,934 - Psyr_3535 0.17 +0.3 4,213,934 - Psyr_3535 0.17 -0.5 4,213,934 - Psyr_3535 0.17 +0.9 4,213,934 - Psyr_3535 0.17 -0.1 4,213,987 + Psyr_3535 0.24 +0.3 4,213,987 + Psyr_3535 0.24 +1.4 4,213,987 + Psyr_3535 0.24 -0.7 4,214,077 + Psyr_3535 0.35 -1.1 4,214,077 + Psyr_3535 0.35 +0.3 4,214,230 + Psyr_3535 0.54 -0.8 4,214,230 + Psyr_3535 0.54 +1.0 4,214,230 + Psyr_3535 0.54 -0.3 4,214,231 - Psyr_3535 0.54 +1.7 4,214,231 - Psyr_3535 0.54 -0.4 4,214,231 - Psyr_3535 0.54 -0.3 4,214,476 + Psyr_3535 0.85 +0.3 4,214,477 - Psyr_3535 0.85 +1.3 4,214,477 - Psyr_3535 0.85 +1.1 4,214,525 + -2.2 4,214,525 + +0.6 4,214,525 + -0.3 4,214,525 + +0.7 4,214,563 + -1.7 4,214,564 - -1.1 4,214,574 + +1.0 4,214,575 - -1.3 4,214,575 - +1.4 4,214,575 - -0.4 4,214,575 - -1.2 4,214,575 - -0.0 4,214,646 + Psyr_3536 0.20 -0.8 4,214,674 + Psyr_3536 0.27 +1.5 4,214,674 + Psyr_3536 0.27 -1.4 4,214,674 + Psyr_3536 0.27 +0.5 4,214,674 + Psyr_3536 0.27 -0.1 4,214,675 - Psyr_3536 0.27 -0.0
Or see this region's nucleotide sequence