Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0961

Experiment: KB with L-alliin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0959 and Psyr_0960 overlap by 4 nucleotidesPsyr_0960 and Psyr_0961 overlap by 8 nucleotidesPsyr_0961 and Psyr_0962 are separated by 9 nucleotidesPsyr_0962 and Psyr_0963 are separated by 3 nucleotides Psyr_0959: Psyr_0959 - Short-chain dehydrogenase/reductase SDR, at 1,093,438 to 1,094,226 _0959 Psyr_0960: Psyr_0960 - conserved hypothetical protein, at 1,094,223 to 1,094,645 _0960 Psyr_0961: Psyr_0961 - deoxyribodipyrimidine photo-lyase type I, at 1,094,638 to 1,096,086 _0961 Psyr_0962: Psyr_0962 - transcriptional regulator, MerR family, at 1,096,096 to 1,096,998 _0962 Psyr_0963: Psyr_0963 - Protein of unknown function DUF523, at 1,097,002 to 1,097,958 _0963 Position (kb) 1094 1095 1096 1097Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1093.799 kb on + strand, within Psyr_0959at 1093.800 kb on - strand, within Psyr_0959at 1093.877 kb on + strand, within Psyr_0959at 1093.878 kb on - strand, within Psyr_0959at 1093.878 kb on - strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.949 kb on + strand, within Psyr_0959at 1093.950 kb on - strand, within Psyr_0959at 1093.950 kb on - strand, within Psyr_0959at 1093.950 kb on - strand, within Psyr_0959at 1094.281 kb on + strand, within Psyr_0960at 1094.305 kb on + strand, within Psyr_0960at 1094.305 kb on + strand, within Psyr_0960at 1094.321 kb on - strand, within Psyr_0960at 1094.398 kb on + strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.399 kb on - strand, within Psyr_0960at 1094.419 kb on + strand, within Psyr_0960at 1094.419 kb on + strand, within Psyr_0960at 1094.420 kb on - strand, within Psyr_0960at 1094.420 kb on - strand, within Psyr_0960at 1094.485 kb on + strand, within Psyr_0960at 1094.486 kb on - strand, within Psyr_0960at 1094.566 kb on + strand, within Psyr_0960at 1094.566 kb on + strand, within Psyr_0960at 1094.566 kb on + strand, within Psyr_0960at 1094.567 kb on - strand, within Psyr_0960at 1094.567 kb on - strand, within Psyr_0960at 1094.567 kb on - strand, within Psyr_0960at 1094.796 kb on + strand, within Psyr_0961at 1094.797 kb on - strand, within Psyr_0961at 1094.883 kb on + strand, within Psyr_0961at 1094.884 kb on - strand, within Psyr_0961at 1094.891 kb on + strand, within Psyr_0961at 1094.891 kb on + strand, within Psyr_0961at 1094.892 kb on - strand, within Psyr_0961at 1095.232 kb on - strand, within Psyr_0961at 1095.234 kb on - strand, within Psyr_0961at 1095.234 kb on - strand, within Psyr_0961at 1095.247 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.250 kb on + strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.251 kb on - strand, within Psyr_0961at 1095.363 kb on - strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.416 kb on + strand, within Psyr_0961at 1095.417 kb on - strand, within Psyr_0961at 1095.417 kb on - strand, within Psyr_0961at 1095.417 kb on - strand, within Psyr_0961at 1095.417 kb on - strand, within Psyr_0961at 1095.419 kb on + strand, within Psyr_0961at 1095.419 kb on + strand, within Psyr_0961at 1095.419 kb on + strand, within Psyr_0961at 1095.420 kb on - strand, within Psyr_0961at 1095.420 kb on - strand, within Psyr_0961at 1095.420 kb on - strand, within Psyr_0961at 1095.420 kb on - strand, within Psyr_0961at 1095.510 kb on + strand, within Psyr_0961at 1095.617 kb on + strand, within Psyr_0961at 1095.618 kb on - strand, within Psyr_0961at 1095.618 kb on - strand, within Psyr_0961at 1095.618 kb on - strand, within Psyr_0961at 1095.643 kb on + strand, within Psyr_0961at 1095.643 kb on + strand, within Psyr_0961at 1095.653 kb on + strand, within Psyr_0961at 1095.653 kb on + strand, within Psyr_0961at 1095.653 kb on + strand, within Psyr_0961at 1095.653 kb on + strand, within Psyr_0961at 1095.654 kb on - strand, within Psyr_0961at 1095.691 kb on + strand, within Psyr_0961at 1095.692 kb on - strand, within Psyr_0961at 1095.707 kb on + strand, within Psyr_0961at 1095.707 kb on + strand, within Psyr_0961at 1095.707 kb on + strand, within Psyr_0961at 1095.707 kb on + strand, within Psyr_0961at 1095.707 kb on + strand, within Psyr_0961at 1095.708 kb on - strand, within Psyr_0961at 1095.783 kb on - strand, within Psyr_0961at 1095.943 kb on + strandat 1095.943 kb on + strandat 1095.943 kb on + strandat 1095.943 kb on + strandat 1095.944 kb on - strandat 1095.996 kb on - strandat 1096.097 kb on + strandat 1096.097 kb on + strandat 1096.097 kb on + strandat 1096.097 kb on + strandat 1096.097 kb on + strandat 1096.098 kb on - strandat 1096.098 kb on - strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.101 kb on + strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.102 kb on - strandat 1096.165 kb on + strandat 1096.165 kb on + strandat 1096.166 kb on - strandat 1096.166 kb on - strandat 1096.166 kb on - strandat 1096.181 kb on - strandat 1096.181 kb on - strandat 1096.197 kb on + strand, within Psyr_0962at 1096.242 kb on + strand, within Psyr_0962at 1096.293 kb on - strand, within Psyr_0962at 1096.293 kb on - strand, within Psyr_0962at 1096.293 kb on - strand, within Psyr_0962at 1096.300 kb on + strand, within Psyr_0962at 1096.300 kb on + strand, within Psyr_0962at 1096.300 kb on + strand, within Psyr_0962at 1096.301 kb on - strand, within Psyr_0962at 1096.301 kb on - strand, within Psyr_0962at 1096.301 kb on - strand, within Psyr_0962at 1096.301 kb on - strand, within Psyr_0962at 1096.301 kb on - strand, within Psyr_0962at 1096.320 kb on - strand, within Psyr_0962at 1096.320 kb on - strand, within Psyr_0962at 1096.320 kb on - strand, within Psyr_0962at 1096.490 kb on + strand, within Psyr_0962at 1096.490 kb on + strand, within Psyr_0962at 1096.490 kb on + strand, within Psyr_0962at 1096.491 kb on - strand, within Psyr_0962at 1096.491 kb on - strand, within Psyr_0962at 1096.491 kb on - strand, within Psyr_0962at 1096.491 kb on - strand, within Psyr_0962at 1096.632 kb on - strand, within Psyr_0962at 1096.847 kb on + strand, within Psyr_0962at 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.048 kb on + strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.049 kb on - strandat 1097.066 kb on + strandat 1097.067 kb on - strandat 1097.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with L-alliin 10 mM
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1,093,799 + Psyr_0959 0.46 -0.6
1,093,800 - Psyr_0959 0.46 -1.7
1,093,877 + Psyr_0959 0.56 -1.0
1,093,878 - Psyr_0959 0.56 -0.7
1,093,878 - Psyr_0959 0.56 +0.1
1,093,949 + Psyr_0959 0.65 +0.8
1,093,949 + Psyr_0959 0.65 +0.1
1,093,949 + Psyr_0959 0.65 +0.9
1,093,949 + Psyr_0959 0.65 +0.5
1,093,949 + Psyr_0959 0.65 +0.7
1,093,950 - Psyr_0959 0.65 +1.3
1,093,950 - Psyr_0959 0.65 -2.4
1,093,950 - Psyr_0959 0.65 +0.3
1,094,281 + Psyr_0960 0.14 +0.2
1,094,305 + Psyr_0960 0.19 +1.1
1,094,305 + Psyr_0960 0.19 -0.2
1,094,321 - Psyr_0960 0.23 +0.1
1,094,398 + Psyr_0960 0.41 +0.8
1,094,399 - Psyr_0960 0.42 -0.1
1,094,399 - Psyr_0960 0.42 +0.2
1,094,399 - Psyr_0960 0.42 -0.1
1,094,399 - Psyr_0960 0.42 +1.1
1,094,419 + Psyr_0960 0.46 +0.7
1,094,419 + Psyr_0960 0.46 -1.7
1,094,420 - Psyr_0960 0.47 +0.5
1,094,420 - Psyr_0960 0.47 +0.4
1,094,485 + Psyr_0960 0.62 -0.5
1,094,486 - Psyr_0960 0.62 +1.5
1,094,566 + Psyr_0960 0.81 +0.2
1,094,566 + Psyr_0960 0.81 +0.2
1,094,566 + Psyr_0960 0.81 +2.9
1,094,567 - Psyr_0960 0.81 -0.6
1,094,567 - Psyr_0960 0.81 +1.5
1,094,567 - Psyr_0960 0.81 +0.1
1,094,796 + Psyr_0961 0.11 -0.5
1,094,797 - Psyr_0961 0.11 +0.0
1,094,883 + Psyr_0961 0.17 -0.5
1,094,884 - Psyr_0961 0.17 +2.4
1,094,891 + Psyr_0961 0.17 -0.0
1,094,891 + Psyr_0961 0.17 -0.2
1,094,892 - Psyr_0961 0.18 +0.5
1,095,232 - Psyr_0961 0.41 -1.0
1,095,234 - Psyr_0961 0.41 +2.3
1,095,234 - Psyr_0961 0.41 +2.5
1,095,247 + Psyr_0961 0.42 -0.2
1,095,250 + Psyr_0961 0.42 -0.1
1,095,250 + Psyr_0961 0.42 +0.4
1,095,250 + Psyr_0961 0.42 +0.3
1,095,250 + Psyr_0961 0.42 +0.8
1,095,250 + Psyr_0961 0.42 +0.6
1,095,250 + Psyr_0961 0.42 +0.1
1,095,250 + Psyr_0961 0.42 -0.3
1,095,250 + Psyr_0961 0.42 -0.9
1,095,251 - Psyr_0961 0.42 -0.0
1,095,251 - Psyr_0961 0.42 +0.3
1,095,251 - Psyr_0961 0.42 -0.7
1,095,251 - Psyr_0961 0.42 -0.6
1,095,251 - Psyr_0961 0.42 +0.5
1,095,251 - Psyr_0961 0.42 -0.2
1,095,251 - Psyr_0961 0.42 +2.8
1,095,251 - Psyr_0961 0.42 -0.5
1,095,251 - Psyr_0961 0.42 +1.7
1,095,251 - Psyr_0961 0.42 -0.3
1,095,251 - Psyr_0961 0.42 +0.7
1,095,251 - Psyr_0961 0.42 -1.6
1,095,363 - Psyr_0961 0.50 +1.1
1,095,416 + Psyr_0961 0.54 +0.5
1,095,416 + Psyr_0961 0.54 +0.6
1,095,416 + Psyr_0961 0.54 -0.6
1,095,416 + Psyr_0961 0.54 -1.5
1,095,416 + Psyr_0961 0.54 +1.6
1,095,416 + Psyr_0961 0.54 +0.6
1,095,416 + Psyr_0961 0.54 +0.7
1,095,416 + Psyr_0961 0.54 -0.9
1,095,417 - Psyr_0961 0.54 -0.9
1,095,417 - Psyr_0961 0.54 +1.3
1,095,417 - Psyr_0961 0.54 +0.7
1,095,417 - Psyr_0961 0.54 -1.6
1,095,419 + Psyr_0961 0.54 -2.3
1,095,419 + Psyr_0961 0.54 -0.8
1,095,419 + Psyr_0961 0.54 -0.2
1,095,420 - Psyr_0961 0.54 +0.5
1,095,420 - Psyr_0961 0.54 -3.0
1,095,420 - Psyr_0961 0.54 +1.1
1,095,420 - Psyr_0961 0.54 +0.3
1,095,510 + Psyr_0961 0.60 +0.7
1,095,617 + Psyr_0961 0.68 +0.6
1,095,618 - Psyr_0961 0.68 +1.1
1,095,618 - Psyr_0961 0.68 +1.1
1,095,618 - Psyr_0961 0.68 +0.2
1,095,643 + Psyr_0961 0.69 -0.9
1,095,643 + Psyr_0961 0.69 +0.1
1,095,653 + Psyr_0961 0.70 +0.7
1,095,653 + Psyr_0961 0.70 -0.9
1,095,653 + Psyr_0961 0.70 +1.9
1,095,653 + Psyr_0961 0.70 -0.9
1,095,654 - Psyr_0961 0.70 +1.7
1,095,691 + Psyr_0961 0.73 +0.2
1,095,692 - Psyr_0961 0.73 -0.2
1,095,707 + Psyr_0961 0.74 +1.5
1,095,707 + Psyr_0961 0.74 -0.2
1,095,707 + Psyr_0961 0.74 +0.6
1,095,707 + Psyr_0961 0.74 +1.6
1,095,707 + Psyr_0961 0.74 -0.7
1,095,708 - Psyr_0961 0.74 -1.1
1,095,783 - Psyr_0961 0.79 +0.8
1,095,943 + +0.5
1,095,943 + -3.4
1,095,943 + -1.9
1,095,943 + -1.9
1,095,944 - +1.1
1,095,996 - -1.0
1,096,097 + -0.4
1,096,097 + +0.1
1,096,097 + +0.1
1,096,097 + +0.4
1,096,097 + +0.3
1,096,098 - +0.5
1,096,098 - +1.5
1,096,101 + -0.1
1,096,101 + -1.5
1,096,101 + -1.5
1,096,101 + -0.4
1,096,101 + +0.1
1,096,101 + -0.4
1,096,101 + -0.9
1,096,101 + -1.7
1,096,101 + +0.2
1,096,101 + -2.2
1,096,102 - -0.9
1,096,102 - +0.6
1,096,102 - -0.3
1,096,102 - +0.1
1,096,102 - -0.3
1,096,102 - -1.6
1,096,102 - -0.4
1,096,165 + +1.5
1,096,165 + +0.5
1,096,166 - -1.1
1,096,166 - +0.4
1,096,166 - -1.3
1,096,181 - -2.2
1,096,181 - +1.1
1,096,197 + Psyr_0962 0.11 +0.3
1,096,242 + Psyr_0962 0.16 -0.3
1,096,293 - Psyr_0962 0.22 -0.2
1,096,293 - Psyr_0962 0.22 +0.5
1,096,293 - Psyr_0962 0.22 +0.1
1,096,300 + Psyr_0962 0.23 +0.2
1,096,300 + Psyr_0962 0.23 +2.6
1,096,300 + Psyr_0962 0.23 +0.1
1,096,301 - Psyr_0962 0.23 -0.5
1,096,301 - Psyr_0962 0.23 +1.8
1,096,301 - Psyr_0962 0.23 -0.0
1,096,301 - Psyr_0962 0.23 -0.1
1,096,301 - Psyr_0962 0.23 -3.2
1,096,320 - Psyr_0962 0.25 +1.2
1,096,320 - Psyr_0962 0.25 -0.4
1,096,320 - Psyr_0962 0.25 -0.9
1,096,490 + Psyr_0962 0.44 +0.5
1,096,490 + Psyr_0962 0.44 +0.0
1,096,490 + Psyr_0962 0.44 -0.0
1,096,491 - Psyr_0962 0.44 -0.1
1,096,491 - Psyr_0962 0.44 -0.1
1,096,491 - Psyr_0962 0.44 -0.3
1,096,491 - Psyr_0962 0.44 +0.1
1,096,632 - Psyr_0962 0.59 +0.7
1,096,847 + Psyr_0962 0.83 +1.4
1,097,048 + -0.3
1,097,048 + -2.4
1,097,048 + -2.4
1,097,048 + +1.1
1,097,048 + +0.5
1,097,048 + +0.4
1,097,048 + +4.1
1,097,048 + +2.4
1,097,048 + +0.1
1,097,049 - -0.3
1,097,049 - -0.7
1,097,049 - -0.3
1,097,049 - +0.8
1,097,049 - +0.9
1,097,049 - -1.7
1,097,049 - +1.2
1,097,049 - -0.7
1,097,049 - +0.3
1,097,049 - -0.7
1,097,049 - +1.1
1,097,049 - +1.6
1,097,049 - -0.9
1,097,049 - -0.2
1,097,049 - +0.2
1,097,049 - -0.2
1,097,066 + +1.4
1,097,067 - -2.7
1,097,067 - -0.3

Or see this region's nucleotide sequence