Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18470 and HSERO_RS18475 are separated by 3 nucleotides HSERO_RS18475 and HSERO_RS18480 are separated by 83 nucleotides HSERO_RS18480 and HSERO_RS18485 are separated by 4 nucleotides HSERO_RS18485 and HSERO_RS18490 overlap by 8 nucleotides
HSERO_RS18470: HSERO_RS18470 - acyltransferase, at 4,240,900 to 4,241,688
_RS18470
HSERO_RS18475: HSERO_RS18475 - acyl carrier protein, at 4,241,692 to 4,241,955
_RS18475
HSERO_RS18480: HSERO_RS18480 - acyl carrier protein, at 4,242,039 to 4,242,296
_RS18480
HSERO_RS18485: HSERO_RS18485 - membrane protein, at 4,242,301 to 4,242,867
_RS18485
HSERO_RS18490: HSERO_RS18490 - AMP-binding protein, at 4,242,860 to 4,244,638
_RS18490
Position (kb) 4242
4243 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4241.505 kb on + strand, within HSERO_RS18470 at 4241.662 kb on + strand at 4241.665 kb on - strand at 4241.753 kb on - strand, within HSERO_RS18475 at 4241.944 kb on + strand at 4242.009 kb on - strand at 4242.014 kb on + strand at 4242.070 kb on + strand, within HSERO_RS18480 at 4242.121 kb on + strand, within HSERO_RS18480 at 4242.130 kb on - strand, within HSERO_RS18480 at 4242.136 kb on - strand, within HSERO_RS18480 at 4242.136 kb on - strand, within HSERO_RS18480 at 4242.181 kb on + strand, within HSERO_RS18480 at 4242.248 kb on - strand at 4242.275 kb on - strand at 4242.357 kb on + strand at 4242.365 kb on - strand, within HSERO_RS18485 at 4242.377 kb on + strand, within HSERO_RS18485 at 4242.425 kb on - strand, within HSERO_RS18485 at 4242.519 kb on + strand, within HSERO_RS18485 at 4242.688 kb on + strand, within HSERO_RS18485 at 4242.705 kb on + strand, within HSERO_RS18485 at 4242.733 kb on - strand, within HSERO_RS18485 at 4242.735 kb on + strand, within HSERO_RS18485 at 4242.735 kb on + strand, within HSERO_RS18485 at 4242.738 kb on - strand, within HSERO_RS18485 at 4242.742 kb on + strand, within HSERO_RS18485 at 4242.743 kb on - strand, within HSERO_RS18485 at 4242.750 kb on - strand, within HSERO_RS18485 at 4242.820 kb on + strand at 4243.054 kb on + strand, within HSERO_RS18490 at 4243.125 kb on + strand, within HSERO_RS18490 at 4243.159 kb on + strand, within HSERO_RS18490 at 4243.310 kb on + strand, within HSERO_RS18490 at 4243.313 kb on - strand, within HSERO_RS18490 at 4243.398 kb on + strand, within HSERO_RS18490 at 4243.398 kb on + strand, within HSERO_RS18490 at 4243.399 kb on + strand, within HSERO_RS18490 at 4243.455 kb on - strand, within HSERO_RS18490 at 4243.492 kb on - strand, within HSERO_RS18490 at 4243.758 kb on - strand, within HSERO_RS18490 at 4243.794 kb on + strand, within HSERO_RS18490
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,241,505 + HSERO_RS18470 0.77 -0.0 4,241,662 + -0.0 4,241,665 - +0.3 4,241,753 - HSERO_RS18475 0.23 +0.8 4,241,944 + +0.9 4,242,009 - +0.4 4,242,014 + +0.3 4,242,070 + HSERO_RS18480 0.12 +0.5 4,242,121 + HSERO_RS18480 0.32 +0.8 4,242,130 - HSERO_RS18480 0.35 -0.6 4,242,136 - HSERO_RS18480 0.38 -0.0 4,242,136 - HSERO_RS18480 0.38 -0.1 4,242,181 + HSERO_RS18480 0.55 -0.4 4,242,248 - +0.2 4,242,275 - -0.2 4,242,357 + -0.9 4,242,365 - HSERO_RS18485 0.11 +0.4 4,242,377 + HSERO_RS18485 0.13 -0.7 4,242,425 - HSERO_RS18485 0.22 -0.1 4,242,519 + HSERO_RS18485 0.38 -0.1 4,242,688 + HSERO_RS18485 0.68 +0.2 4,242,705 + HSERO_RS18485 0.71 -2.3 4,242,733 - HSERO_RS18485 0.76 +0.7 4,242,735 + HSERO_RS18485 0.77 -0.6 4,242,735 + HSERO_RS18485 0.77 -0.6 4,242,738 - HSERO_RS18485 0.77 +0.0 4,242,742 + HSERO_RS18485 0.78 +0.3 4,242,743 - HSERO_RS18485 0.78 -1.1 4,242,750 - HSERO_RS18485 0.79 +0.6 4,242,820 + -0.5 4,243,054 + HSERO_RS18490 0.11 -0.2 4,243,125 + HSERO_RS18490 0.15 -0.3 4,243,159 + HSERO_RS18490 0.17 +0.9 4,243,310 + HSERO_RS18490 0.25 -0.6 4,243,313 - HSERO_RS18490 0.25 -0.0 4,243,398 + HSERO_RS18490 0.30 +0.9 4,243,398 + HSERO_RS18490 0.30 +0.7 4,243,399 + HSERO_RS18490 0.30 +0.8 4,243,455 - HSERO_RS18490 0.33 +0.1 4,243,492 - HSERO_RS18490 0.36 -0.2 4,243,758 - HSERO_RS18490 0.50 +2.1 4,243,794 + HSERO_RS18490 0.53 +1.4
Or see this region's nucleotide sequence