Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17455

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI
4,004,759	+				+1.0
4,004,766	+				-0.2
4,004,768	-				+0.4
4,004,770	+				+0.4
4,004,771	+				-1.1
4,004,771	+				-0.8
4,004,771	+				-0.5
4,004,771	+				-1.5
4,004,771	+				+0.5
4,004,773	+				-1.4
4,004,773	+				+0.1
4,004,774	-				-0.4
4,004,774	-				-0.7
4,004,776	-				-0.3
4,004,776	-				-0.6
4,004,778	+				-1.0
4,004,778	+				-0.0
4,004,778	-				-1.8
4,004,778	-				+0.6
4,004,778	-				-1.0
4,004,779	-				-1.6
4,004,779	-				+0.3
4,004,779	-				-0.2
4,004,780	+				-0.1
4,004,780	-				-0.4
4,004,780	-				-0.6
4,004,780	-				-0.5
4,004,786	-				-0.7
4,004,788	-				-0.5
4,004,791	+				+0.6
4,004,792	+				-0.8
4,004,792	+				-1.2
4,004,794	+				-0.0
4,004,796	+				+0.8
4,004,799	+				-1.1
4,004,802	-				-1.9
4,004,804	+				-0.1
4,004,844	+				-0.6
4,004,844	+				+0.1
4,004,844	+				+0.2
4,004,844	+				+0.4
4,004,844	+				-0.1
4,004,849	+				-0.3
4,004,852	-				-0.6
4,004,852	-				+0.2
4,004,852	-				-0.1
4,004,853	+				-0.0
4,004,854	+				+0.2
4,004,854	+				-0.6
4,004,854	+				-0.4
4,004,855	+				+0.6
4,004,857	-				-0.4
4,004,859	+				+0.2
4,004,859	+				-0.1
4,004,859	-				+0.4
4,004,859	-				-0.9
4,004,861	-				-0.8
4,004,862	+				+0.4
4,004,862	-				-0.6
4,004,862	-				-0.0
4,004,862	-				-0.1
4,004,862	-				-0.3
4,004,867	-				-0.5
4,004,867	-				+0.0
4,004,870	+				-1.0
4,004,870	-				-1.0
4,004,876	+				-0.5
4,004,876	+				+0.3
4,004,876	+				-2.1
4,004,876	+				-0.0
4,004,878	+				+0.1
4,004,884	-				+0.0
4,004,909	+				-2.0
4,004,917	-				-0.8
4,004,917	-				-0.4
4,004,917	-				-1.4
4,004,925	+				-1.1
4,004,928	-				-0.9
4,004,930	+				-0.4
4,004,930	+				-0.5
4,004,930	+				-0.2
4,004,930	+				-1.0
4,004,938	-				-0.5
4,004,938	-				-0.8
4,004,938	-				-0.8
4,004,956	+				-0.1
4,004,956	+				+0.5
4,004,964	-				-0.3
4,004,964	-				-1.3
4,004,964	-				-0.3
4,004,964	-				+0.2
4,004,964	-				-0.3
4,004,964	-				+0.2
4,004,966	+				+1.3
4,004,966	+				+0.0
4,004,966	+				+0.3
4,004,966	+				-0.1
4,004,966	+				-1.7
4,004,974	-				+0.1
4,004,974	-				-0.4
4,004,982	+				-0.2
4,004,982	+				-1.3
4,004,982	+				-0.8
4,004,982	+				+0.5
4,004,989	-				-0.3
4,004,990	-				+0.7
4,004,990	-				-1.6
4,004,990	-				-0.1
4,004,990	-				+1.1
4,004,990	-				-0.7
4,005,003	-				-1.4
4,005,006	+				-1.6
4,005,006	+				-1.6
4,005,006	+				+0.0
4,005,006	+				+0.2
4,005,006	+				-0.4
4,005,007	+				+0.8
4,005,007	+				-0.2
4,005,007	+				-1.5
4,005,007	-				+0.2
4,005,008	-				-1.0
4,005,014	+				-0.7
4,005,014	-				+1.1
4,005,018	+				-0.8
4,005,020	-				-0.7
4,005,020	-				-0.2
4,005,020	-				+0.2
4,005,026	-				-0.5
4,005,034	+				-0.0
4,005,040	+				+0.2
4,005,040	+				+1.0
4,005,042	-				-0.8
4,005,048	-				-0.2
4,005,053	-				-0.3
4,005,059	+				-0.7
4,005,059	+				-1.0
4,005,064	+				-0.3
4,005,068	+				-0.8
4,005,070	+				-0.8
4,005,070	+				-0.2
4,005,070	+				-0.0
4,005,070	+				-0.1
4,005,070	+				+0.1
4,005,070	+				+2.0
4,005,070	+				+0.2
4,005,070	+				-0.2
4,005,071	+				-0.2
4,005,073	+				-0.5
4,005,073	+				-1.9
4,005,073	+				-0.5
4,005,078	-				-0.8
4,005,078	-				-0.5
4,005,078	-				-0.2
4,005,078	-				-0.3
4,005,078	-				+0.1
4,005,078	-				+0.1
4,005,078	-				-0.3
4,005,080	+				+0.2
4,005,080	-				-1.0
4,005,081	+				-0.2
4,005,081	-				-0.4
4,005,081	-				-0.1
4,005,081	-				-0.0
4,005,081	-				-0.2
4,005,081	-				-1.3
4,005,082	+				-0.2
4,005,087	+				-0.3
4,005,087	+				-1.0
4,005,089	-				+1.1
4,005,090	-				-0.0
4,005,090	-				+0.7
4,005,090	-				-1.3
4,005,092	+				+1.0
4,005,092	+				-1.3
4,005,092	+				-0.3
4,005,092	+				-0.0
4,005,095	-				-0.3
4,005,095	-				-0.9
4,005,100	-				-1.4
4,005,100	-				-0.1
4,005,100	-				-0.4
4,005,100	-				-0.7
4,005,100	-				-1.3
4,005,100	-				-0.0
4,005,139	+				-1.4
4,005,140	+				-0.4
4,005,140	+				-0.4
4,005,140	+				-0.0
4,005,144	+				-0.7
4,005,144	+				+0.4
4,005,144	+				-0.0
4,005,145	+				-0.8
4,005,148	-				+0.0
4,005,152	+				+0.2
4,005,152	+				-0.3
4,005,152	+				-0.2
4,005,152	-				-0.4
4,005,152	-				-1.8
4,005,152	-				+2.0
4,005,152	-				+1.8
4,005,153	-				+1.1
4,005,153	-				-0.2
4,005,153	-				-0.4
4,005,158	-				-0.3
4,005,159	+				+1.6
4,005,159	+				+1.9
4,005,159	+				-0.8
4,005,159	+				+0.4
4,005,160	-				-0.1
4,005,160	-				+0.1
4,005,160	-				-0.1
4,005,160	-				-0.8
4,005,161	-				-0.2
4,005,163	+				-0.4
4,005,163	+				+0.2
4,005,167	-				-1.5
4,005,168	+				-0.6
4,005,168	+				-0.4
4,005,171	-				-0.4
4,005,181	-		HSERO_RS17450	0.12	-0.3
4,005,186	-		HSERO_RS17450	0.15	+0.7
4,005,186	-		HSERO_RS17450	0.15	-0.3
4,005,187	+		HSERO_RS17450	0.15	-0.2
4,005,187	+		HSERO_RS17450	0.15	-1.2
4,005,189	-		HSERO_RS17450	0.16	-0.9
4,005,192	+		HSERO_RS17450	0.17	-2.0
4,005,194	-		HSERO_RS17450	0.18	-0.3
4,005,195	-		HSERO_RS17450	0.18	-0.3
4,005,195	-		HSERO_RS17450	0.18	-0.9
4,005,207	+		HSERO_RS17450	0.24	-0.2
4,005,213	+		HSERO_RS17450	0.26	-0.5
4,005,215	-		HSERO_RS17450	0.27	-0.5
4,005,226	+		HSERO_RS17450	0.32	-0.5
4,005,227	+		HSERO_RS17450	0.32	-0.3
4,005,227	-		HSERO_RS17450	0.32	-1.8
4,005,228	+		HSERO_RS17450	0.32	-0.8
4,005,228	+		HSERO_RS17450	0.32	-0.0
4,005,228	+		HSERO_RS17450	0.32	-0.9
4,005,228	+		HSERO_RS17450	0.32	-0.7
4,005,228	+		HSERO_RS17450	0.32	-0.3
4,005,228	+		HSERO_RS17450	0.32	-0.1
4,005,228	+		HSERO_RS17450	0.32	-1.5
4,005,228	+		HSERO_RS17450	0.32	-0.3
4,005,236	-		HSERO_RS17450	0.36	+0.1
4,005,236	-		HSERO_RS17450	0.36	-1.1
4,005,237	+		HSERO_RS17450	0.36	-0.2
4,005,237	-		HSERO_RS17450	0.36	-0.7
4,005,239	+		HSERO_RS17450	0.37	-0.2
4,005,243	+		HSERO_RS17450	0.39	+0.2
4,005,245	+		HSERO_RS17450	0.40	-0.0
4,005,245	+		HSERO_RS17450	0.40	+0.7
4,005,245	+		HSERO_RS17450	0.40	-0.6
4,005,245	+		HSERO_RS17450	0.40	-0.3
4,005,245	+		HSERO_RS17450	0.40	-0.4
4,005,245	+		HSERO_RS17450	0.40	+0.9
4,005,247	-		HSERO_RS17450	0.41	-1.3
4,005,253	-		HSERO_RS17450	0.43	+0.8
4,005,260	-		HSERO_RS17450	0.46	-0.5
4,005,260	-		HSERO_RS17450	0.46	-0.3
4,005,260	-		HSERO_RS17450	0.46	-1.2
4,005,267	-		HSERO_RS17450	0.49	-0.2
4,005,287	+		HSERO_RS17450	0.58	-0.4
4,005,287	+		HSERO_RS17450	0.58	+0.3
4,005,287	+		HSERO_RS17450	0.58	-0.7
4,005,287	+		HSERO_RS17450	0.58	+0.5
4,005,287	+		HSERO_RS17450	0.58	-0.9
4,005,295	-		HSERO_RS17450	0.61	-0.2
4,005,295	-		HSERO_RS17450	0.61	-0.7
4,005,295	-		HSERO_RS17450	0.61	-0.3
4,005,295	-		HSERO_RS17450	0.61	-0.8
4,005,295	-		HSERO_RS17450	0.61	-0.4
4,005,295	-		HSERO_RS17450	0.61	-0.6
4,005,295	-		HSERO_RS17450	0.61	-0.6
4,005,309	-		HSERO_RS17450	0.67	-0.3
4,005,316	-		HSERO_RS17450	0.70	+0.1
4,005,316	-		HSERO_RS17450	0.70	-0.2
4,005,323	+		HSERO_RS17450	0.73	+0.0
4,005,356	+		HSERO_RS17450	0.87	+0.1
4,005,356	+		HSERO_RS17450	0.87	-0.6
4,005,369	+				-0.3
4,005,369	+				-1.0
4,005,369	+				-0.3
4,005,369	+				-0.7
4,005,369	+				-1.9
4,005,369	+				+0.1
4,005,369	+				-0.6
4,005,369	+				-1.2
4,005,369	+				-0.2
4,005,369	+				-0.1
4,005,369	+				+1.2
4,005,370	+				-0.4
4,005,372	-				-0.3
4,005,377	-				-0.0
4,005,377	-				-0.4
4,005,377	-				+0.2
4,005,377	-				-0.2
4,005,377	-				-1.6
4,005,377	-				-2.4
4,005,377	-				-0.4
4,005,377	-				-0.1
4,005,377	-				+0.1
4,005,377	-				+2.0
4,005,377	-				-0.4
4,005,377	-				-0.7
4,005,377	-				-0.9
4,005,377	-				+0.4
4,005,377	-				-0.7
4,005,377	-				-0.1
4,005,379	+				-0.1
4,005,379	+				+0.4
4,005,380	+				+0.0
4,005,395	+				-0.8
4,005,395	+				-0.1
4,005,400	+				-1.1
4,005,403	-				+0.0
4,005,403	-				-0.7
4,005,403	-				+0.9
4,005,411	+				-0.2
4,005,421	+				-0.2
4,005,421	+				-0.0
4,005,421	+				-0.8
4,005,421	+				-0.6
4,005,421	+				-0.5
4,005,421	+				+0.2
4,005,421	+				-0.5
4,005,421	+				+0.9
4,005,421	+				+0.4
4,005,421	+				-0.8
4,005,421	+				-0.0
4,005,421	+				-0.2
4,005,429	-				-1.5
4,005,429	-				+0.3
4,005,429	-				-0.6
4,005,429	-				-0.2
4,005,429	-				-0.5
4,005,429	-				-2.3
4,005,429	-				+1.6
4,005,429	-				+0.3
4,005,429	-				+0.0
4,005,429	-				+1.3
4,005,429	-				+0.6
4,005,436	+				-0.4
4,005,436	+				-2.5
4,005,436	+				-0.8
4,005,436	+				-0.1
4,005,436	+				+0.3
4,005,436	+				-0.9
4,005,436	-				-0.0
4,005,437	-				-1.7
4,005,444	-				+0.5
4,005,444	-				+0.4
4,005,444	-				-1.8
4,005,444	-				-0.2
4,005,444	-				+0.2
4,005,449	-				-0.1
4,005,453	+				-0.3
4,005,461	+				-0.7
4,005,461	+				+0.6
4,005,461	+				-0.6
4,005,466	+				-0.4
4,005,469	-				-0.3
4,005,469	-				+0.8
4,005,471	+				-0.1
4,005,471	+				-0.6
4,005,473	+				-0.7
4,005,473	+				-1.1
4,005,473	+				+0.1
4,005,473	+				-0.1
4,005,473	+				-1.6
4,005,473	+				-0.2
4,005,473	+				+0.4
4,005,473	+				+0.2
4,005,473	+				-0.2
4,005,473	+				+0.6
4,005,473	+				-0.3
4,005,473	+				-1.5
4,005,474	-				-0.6
4,005,479	-				+0.4
4,005,479	-				-0.3
4,005,479	-				+0.0
4,005,479	-				-0.1
4,005,481	-				-0.5
4,005,481	-				+0.9
4,005,481	-				+0.2
4,005,481	-				+0.5
4,005,481	-				-0.7
4,005,481	-				+1.5
4,005,481	-				-0.0
4,005,481	-				+0.1
4,005,481	-				+1.2
4,005,481	-				+0.0
4,005,481	-				-0.3
4,005,481	-				-0.5
4,005,481	-				+0.0
4,005,481	-				-2.0
4,005,481	-				-0.2
4,005,481	-				-0.3
4,005,481	-				+0.2
4,005,481	-				-0.2
4,005,481	-				-0.1
4,005,481	-				-0.7
4,005,481	-				-0.4
4,005,481	-				-0.4
4,005,481	-				-0.3
4,005,481	-				+0.0
4,005,483	+				-0.6
4,005,486	-				-1.2
4,005,486	-				-0.1
4,005,491	-				+0.3
4,005,509	+				-1.1
4,005,509	+				+2.6
4,005,511	+				-0.7
4,005,511	+				-1.0
4,005,511	+				-0.7
4,005,517	-				-1.4
4,005,517	-				-2.5
4,005,517	-				-1.0
4,005,517	-				-0.1
4,005,529	-				+0.5
4,005,536	+				+0.0
4,005,536	+				-1.2
4,005,538	+				+0.3
4,005,538	+				-0.4
4,005,543	+				-0.5
4,005,544	+				+0.3
4,005,544	+				-1.2
4,005,544	+				-2.6
4,005,544	+				+2.0
4,005,544	+				-0.4
4,005,551	-				-0.2
4,005,551	-				-1.4
4,005,551	-				-0.3
4,005,552	-				-0.1
4,005,552	-				-0.1
4,005,552	-				+0.3
4,005,552	-				-1.2
4,005,552	-				+0.0
4,005,553	-				-1.2
4,005,559	+				-0.5
4,005,565	-				-0.9
4,005,567	-				+0.4
4,005,567	-				+0.2
4,005,578	-				+0.6
4,005,580	+				+1.5
4,005,580	+				+2.0
4,005,585	+				+0.4
4,005,587	+				+0.1
4,005,587	+				+0.5
4,005,587	+				+2.7
4,005,587	+				+0.7
4,005,588	-				-0.3
4,005,593	-				-0.5
4,005,600	+				+0.1
4,005,607	+				-1.0
4,005,608	-				+0.7
4,005,612	-				-0.0
4,005,617	+				+0.5
4,005,617	+				-3.1
4,005,625	-				+0.4
4,005,626	+				-0.8
4,005,630	+				+1.4
4,005,634	-				-0.3
4,005,652	+				+0.0
4,005,652	+				-0.6
4,005,653	+				-0.1
4,005,657	+				-0.2
4,005,660	-				-0.1
4,005,660	-				-1.0
4,005,660	-				-0.2
4,005,660	-				-1.9
4,005,661	-				+0.4
4,005,675	+				+0.1
4,005,675	+				-0.3
4,005,683	-				-0.1
4,005,683	-				-0.3
4,005,699	-				+0.8
4,005,702	+				-0.7
4,005,702	+				+0.7
4,005,702	+				+0.8
4,005,704	+				-1.1
4,005,708	+				-0.0
4,005,708	+				-0.1
4,005,710	+				-0.2
4,005,719	-				-1.0
4,005,724	+				+0.8
4,005,732	-				-1.0
4,005,738	+				-0.0
4,005,738	+				+0.4
4,005,746	-				-0.5
4,005,749	+				+0.5
4,005,749	+				-1.0
4,005,757	-				+0.6
4,005,757	-				+0.1
4,005,765	+				+0.3
4,005,782	-				-0.6
4,005,787	+				-0.3
4,005,802	+		HSERO_RS17455	0.11	+0.3
4,005,802	+		HSERO_RS17455	0.11	+0.4
4,005,802	+		HSERO_RS17455	0.11	+1.4
4,005,802	+		HSERO_RS17455	0.11	-1.0
4,005,807	+		HSERO_RS17455	0.12	-0.5
4,005,807	+		HSERO_RS17455	0.12	+0.7
4,005,807	+		HSERO_RS17455	0.12	-0.5
4,005,810	-		HSERO_RS17455	0.12	-0.0
4,005,810	-		HSERO_RS17455	0.12	+0.9
4,005,810	-		HSERO_RS17455	0.12	-0.3
4,005,810	-		HSERO_RS17455	0.12	-0.7
4,005,810	-		HSERO_RS17455	0.12	-0.2
4,005,812	+		HSERO_RS17455	0.12	+0.1
4,005,812	+		HSERO_RS17455	0.12	+0.1
4,005,812	+		HSERO_RS17455	0.12	-0.1
4,005,812	+		HSERO_RS17455	0.12	-0.8
4,005,812	+		HSERO_RS17455	0.12	-0.4
4,005,812	+		HSERO_RS17455	0.12	-0.3
4,005,815	-		HSERO_RS17455	0.13	+0.2
4,005,817	+		HSERO_RS17455	0.13	+0.4
4,005,820	-		HSERO_RS17455	0.14	+0.2
4,005,820	-		HSERO_RS17455	0.14	-1.2
4,005,820	-		HSERO_RS17455	0.14	-0.4
4,005,820	-		HSERO_RS17455	0.14	+0.2
4,005,820	-		HSERO_RS17455	0.14	-0.5
4,005,820	-		HSERO_RS17455	0.14	+0.8
4,005,841	+		HSERO_RS17455	0.17	+0.2
4,005,895	-		HSERO_RS17455	0.27	+0.5
4,005,952	+		HSERO_RS17455	0.37	-1.1
4,005,962	-		HSERO_RS17455	0.39	-0.3
4,005,974	-		HSERO_RS17455	0.41	-0.5
4,006,088	-		HSERO_RS17455	0.61	-0.6
4,006,196	-		HSERO_RS17455	0.79	+0.5
4,006,211	+		HSERO_RS17455	0.82	-0.9
4,006,237	+		HSERO_RS17455	0.87	+0.1
4,006,322	-				-0.1
4,006,489	+		HSERO_RS17460	0.13	-0.7
4,006,498	-		HSERO_RS17460	0.14	+1.0
4,006,503	-		HSERO_RS17460	0.15	+0.5
4,006,510	+		HSERO_RS17460	0.16	+0.3
4,006,613	+		HSERO_RS17460	0.29	-0.1
4,006,621	-		HSERO_RS17460	0.31	+0.1
4,006,665	+				-0.8
4,006,701	+		HSERO_RS17460	0.41	+0.1
4,006,743	+		HSERO_RS17460	0.47	-0.2
4,006,745	+		HSERO_RS17460	0.47	-0.2
4,006,751	-		HSERO_RS17460	0.48	-2.2
4,006,753	-		HSERO_RS17460	0.48	-0.2
4,006,777	-		HSERO_RS17460	0.51	-0.3
4,006,847	+		HSERO_RS17460	0.61	-0.1
4,006,888	+		HSERO_RS17460	0.66	+0.1
4,006,888	+		HSERO_RS17460	0.66	-0.3
4,006,894	-		HSERO_RS17460	0.67	-1.6
4,006,975	-		HSERO_RS17460	0.78	+0.1
4,006,980	-		HSERO_RS17460	0.78	-0.0
4,006,981	-		HSERO_RS17460	0.79	-0.8
4,007,029	+		HSERO_RS17460	0.85	-1.1
4,007,061	+		HSERO_RS17460	0.89	+0.1
4,007,066	+		HSERO_RS17460	0.90	-0.3
4,007,069	-				-1.4
4,007,144	-				-0.2
4,007,144	-				-0.0
4,007,144	-				-0.5
4,007,146	+				-0.7
4,007,146	+				+0.7
4,007,162	+				-0.5
4,007,174	+				+0.5
4,007,186	+				+0.9
4,007,231	+				-0.6
4,007,268	-				-0.0
4,007,268	-				+0.1
4,007,298	-		HSERO_RS17465	0.11	-0.2