Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04420 and HSERO_RS04425 are separated by 121 nucleotides HSERO_RS04425 and HSERO_RS04430 are separated by 0 nucleotides HSERO_RS04430 and HSERO_RS04435 overlap by 1 nucleotides HSERO_RS04435 and HSERO_RS04440 are separated by 13 nucleotides
HSERO_RS04420: HSERO_RS04420 - DNA-binding transcriptional regulator, at 975,609 to 976,046
_RS04420
HSERO_RS04425: HSERO_RS04425 - phage-encoded membrane protein, at 976,168 to 976,833
_RS04425
HSERO_RS04430: HSERO_RS04430 - phage late control protein, at 976,834 to 978,063
_RS04430
HSERO_RS04435: HSERO_RS04435 - oxidoreductase, at 978,063 to 978,590
_RS04435
HSERO_RS04440: HSERO_RS04440 - tail protein, at 978,604 to 981,228
_RS04440
Position (kb) 976
977
978
979 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 976.066 kb on + strand at 976.082 kb on + strand at 976.089 kb on + strand at 976.089 kb on + strand at 976.089 kb on - strand at 976.091 kb on + strand at 976.094 kb on - strand at 976.094 kb on - strand at 976.094 kb on - strand at 976.097 kb on - strand at 976.099 kb on - strand at 976.099 kb on - strand at 976.127 kb on + strand at 976.127 kb on + strand at 976.136 kb on - strand at 976.141 kb on + strand at 976.141 kb on - strand at 976.141 kb on - strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.147 kb on + strand at 976.149 kb on + strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.155 kb on - strand at 976.168 kb on - strand at 976.168 kb on - strand at 976.186 kb on + strand at 976.196 kb on + strand at 976.199 kb on - strand at 976.199 kb on - strand at 976.201 kb on - strand at 976.206 kb on + strand at 976.220 kb on + strand at 976.228 kb on - strand at 976.229 kb on - strand at 976.239 kb on + strand, within HSERO_RS04425 at 976.239 kb on + strand, within HSERO_RS04425 at 976.264 kb on - strand, within HSERO_RS04425 at 976.273 kb on + strand, within HSERO_RS04425 at 976.281 kb on - strand, within HSERO_RS04425 at 976.285 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.292 kb on + strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.300 kb on - strand, within HSERO_RS04425 at 976.308 kb on - strand, within HSERO_RS04425 at 976.329 kb on + strand, within HSERO_RS04425 at 976.336 kb on - strand, within HSERO_RS04425 at 976.337 kb on - strand, within HSERO_RS04425 at 976.355 kb on + strand, within HSERO_RS04425 at 976.355 kb on + strand, within HSERO_RS04425 at 976.363 kb on - strand, within HSERO_RS04425 at 976.410 kb on - strand, within HSERO_RS04425 at 976.422 kb on + strand, within HSERO_RS04425 at 976.434 kb on + strand, within HSERO_RS04425 at 976.436 kb on + strand, within HSERO_RS04425 at 976.443 kb on + strand, within HSERO_RS04425 at 976.451 kb on - strand, within HSERO_RS04425 at 976.469 kb on - strand, within HSERO_RS04425 at 976.471 kb on + strand, within HSERO_RS04425 at 976.479 kb on - strand, within HSERO_RS04425 at 976.490 kb on - strand, within HSERO_RS04425 at 976.498 kb on + strand, within HSERO_RS04425 at 976.506 kb on - strand, within HSERO_RS04425 at 976.537 kb on - strand, within HSERO_RS04425 at 976.575 kb on + strand, within HSERO_RS04425 at 976.638 kb on + strand, within HSERO_RS04425 at 976.640 kb on - strand, within HSERO_RS04425 at 976.646 kb on - strand, within HSERO_RS04425 at 976.685 kb on + strand, within HSERO_RS04425 at 976.685 kb on + strand, within HSERO_RS04425 at 976.687 kb on + strand, within HSERO_RS04425 at 976.687 kb on + strand, within HSERO_RS04425 at 976.693 kb on - strand, within HSERO_RS04425 at 976.693 kb on - strand, within HSERO_RS04425 at 976.747 kb on + strand, within HSERO_RS04425 at 976.751 kb on + strand, within HSERO_RS04425 at 976.752 kb on + strand, within HSERO_RS04425 at 976.767 kb on - strand at 976.832 kb on + strand at 976.841 kb on + strand at 976.849 kb on - strand at 976.849 kb on - strand at 976.888 kb on + strand at 976.888 kb on + strand at 976.896 kb on - strand at 976.896 kb on - strand at 976.896 kb on - strand at 976.924 kb on + strand at 976.933 kb on - strand at 976.943 kb on + strand at 976.979 kb on - strand, within HSERO_RS04430 at 977.008 kb on - strand at 977.008 kb on - strand, within HSERO_RS04430 at 977.268 kb on - strand, within HSERO_RS04430 at 977.312 kb on - strand, within HSERO_RS04430 at 977.361 kb on + strand, within HSERO_RS04430 at 977.474 kb on + strand, within HSERO_RS04430 at 977.547 kb on + strand, within HSERO_RS04430 at 977.603 kb on - strand, within HSERO_RS04430 at 977.626 kb on + strand, within HSERO_RS04430 at 977.845 kb on - strand, within HSERO_RS04430 at 977.845 kb on - strand, within HSERO_RS04430 at 977.933 kb on - strand, within HSERO_RS04430 at 977.976 kb on + strand at 977.984 kb on - strand at 978.475 kb on + strand, within HSERO_RS04435 at 978.478 kb on - strand, within HSERO_RS04435 at 978.546 kb on - strand at 978.641 kb on + strand at 978.892 kb on + strand, within HSERO_RS04440 at 978.961 kb on + strand, within HSERO_RS04440
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 976,066 + +0.0 976,082 + +0.4 976,089 + +0.4 976,089 + +0.2 976,089 - +0.1 976,091 + -1.6 976,094 - +0.2 976,094 - +0.3 976,094 - -0.9 976,097 - -2.2 976,099 - -0.6 976,099 - +2.1 976,127 + +0.0 976,127 + +0.5 976,136 - -1.6 976,141 + -0.2 976,141 - -0.4 976,141 - -1.2 976,147 + -0.7 976,147 + +0.1 976,147 + -1.0 976,147 + -0.6 976,147 + +1.3 976,147 + -0.4 976,147 + +0.5 976,147 + -0.8 976,147 + +0.3 976,147 + -0.7 976,147 + -0.5 976,147 + -0.0 976,147 + -0.4 976,149 + -1.0 976,155 - -0.2 976,155 - +1.2 976,155 - +0.7 976,155 - -0.1 976,155 - +1.0 976,155 - -2.0 976,155 - +0.1 976,155 - +0.2 976,155 - -0.1 976,155 - +0.0 976,155 - -0.1 976,155 - -0.5 976,168 - -0.5 976,168 - -0.1 976,186 + +0.1 976,196 + -0.0 976,199 - -0.5 976,199 - +1.7 976,201 - -0.4 976,206 + +0.5 976,220 + +0.4 976,228 - +0.7 976,229 - -0.4 976,239 + HSERO_RS04425 0.11 -0.4 976,239 + HSERO_RS04425 0.11 +0.7 976,264 - HSERO_RS04425 0.14 -0.8 976,273 + HSERO_RS04425 0.16 +0.6 976,281 - HSERO_RS04425 0.17 -1.1 976,285 + HSERO_RS04425 0.18 -0.2 976,292 + HSERO_RS04425 0.19 +0.5 976,292 + HSERO_RS04425 0.19 -1.1 976,292 + HSERO_RS04425 0.19 +0.1 976,300 - HSERO_RS04425 0.20 +0.0 976,300 - HSERO_RS04425 0.20 -0.6 976,300 - HSERO_RS04425 0.20 +0.2 976,308 - HSERO_RS04425 0.21 +0.2 976,329 + HSERO_RS04425 0.24 +0.7 976,336 - HSERO_RS04425 0.25 -0.9 976,337 - HSERO_RS04425 0.25 +0.3 976,355 + HSERO_RS04425 0.28 +2.8 976,355 + HSERO_RS04425 0.28 -0.4 976,363 - HSERO_RS04425 0.29 -1.1 976,410 - HSERO_RS04425 0.36 +0.4 976,422 + HSERO_RS04425 0.38 +0.2 976,434 + HSERO_RS04425 0.40 +0.6 976,436 + HSERO_RS04425 0.40 +0.1 976,443 + HSERO_RS04425 0.41 -0.1 976,451 - HSERO_RS04425 0.42 -0.2 976,469 - HSERO_RS04425 0.45 -0.1 976,471 + HSERO_RS04425 0.45 -0.3 976,479 - HSERO_RS04425 0.47 -1.1 976,490 - HSERO_RS04425 0.48 +0.0 976,498 + HSERO_RS04425 0.50 +0.5 976,506 - HSERO_RS04425 0.51 +0.6 976,537 - HSERO_RS04425 0.55 -0.7 976,575 + HSERO_RS04425 0.61 -0.0 976,638 + HSERO_RS04425 0.71 +2.1 976,640 - HSERO_RS04425 0.71 -1.3 976,646 - HSERO_RS04425 0.72 +0.1 976,685 + HSERO_RS04425 0.78 -0.4 976,685 + HSERO_RS04425 0.78 +0.3 976,687 + HSERO_RS04425 0.78 -0.2 976,687 + HSERO_RS04425 0.78 -0.8 976,693 - HSERO_RS04425 0.79 +0.3 976,693 - HSERO_RS04425 0.79 +0.2 976,747 + HSERO_RS04425 0.87 -0.3 976,751 + HSERO_RS04425 0.88 -1.5 976,752 + HSERO_RS04425 0.88 -0.2 976,767 - -0.3 976,832 + +0.2 976,841 + +0.4 976,849 - -0.0 976,849 - -0.6 976,888 + -0.1 976,888 + -0.8 976,896 - -1.9 976,896 - +0.9 976,896 - +1.2 976,924 + -0.3 976,933 - +1.5 976,943 + +1.0 976,979 - HSERO_RS04430 0.12 -0.7 977,008 - -0.2 977,008 - HSERO_RS04430 0.14 +0.1 977,268 - HSERO_RS04430 0.35 -0.1 977,312 - HSERO_RS04430 0.39 +0.0 977,361 + HSERO_RS04430 0.43 -1.1 977,474 + HSERO_RS04430 0.52 +0.4 977,547 + HSERO_RS04430 0.58 +0.7 977,603 - HSERO_RS04430 0.63 +0.7 977,626 + HSERO_RS04430 0.64 -0.0 977,845 - HSERO_RS04430 0.82 +0.6 977,845 - HSERO_RS04430 0.82 +1.4 977,933 - HSERO_RS04430 0.89 +0.6 977,976 + -0.3 977,984 - -0.2 978,475 + HSERO_RS04435 0.78 -0.2 978,478 - HSERO_RS04435 0.79 -1.6 978,546 - +0.5 978,641 + -0.7 978,892 + HSERO_RS04440 0.11 -0.2 978,961 + HSERO_RS04440 0.14 +0.3
Or see this region's nucleotide sequence