Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28985

Experiment: Ionizing radiation, 126.196 Gy,

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_28975 and AO353_28980 are separated by 3 nucleotidesAO353_28980 and AO353_28985 are separated by 220 nucleotidesAO353_28985 and AO353_28990 are separated by 348 nucleotides AO353_28975: AO353_28975 - molybdopterin-binding protein, at 6,299,397 to 6,300,170 _28975 AO353_28980: AO353_28980 - cytochrome B, at 6,300,174 to 6,300,767 _28980 AO353_28985: AO353_28985 - hypothetical protein, at 6,300,988 to 6,301,422 _28985 AO353_28990: AO353_28990 - LOG family protein, at 6,301,771 to 6,303,144 _28990 Position (kb) 6300 6301 6302Strain fitness (log2 ratio) -2 -1 0 1 2at 6300.153 kb on - strandat 6300.175 kb on + strandat 6300.242 kb on + strand, within AO353_28980at 6300.318 kb on + strand, within AO353_28980at 6300.371 kb on + strand, within AO353_28980at 6300.371 kb on + strand, within AO353_28980at 6300.371 kb on + strand, within AO353_28980at 6300.371 kb on + strand, within AO353_28980at 6300.371 kb on + strand, within AO353_28980at 6300.371 kb on + strand, within AO353_28980at 6300.371 kb on + strand, within AO353_28980at 6300.371 kb on + strand, within AO353_28980at 6300.371 kb on + strand, within AO353_28980at 6300.371 kb on + strand, within AO353_28980at 6300.372 kb on - strand, within AO353_28980at 6300.372 kb on - strand, within AO353_28980at 6300.372 kb on - strand, within AO353_28980at 6300.372 kb on - strand, within AO353_28980at 6300.372 kb on - strand, within AO353_28980at 6300.372 kb on - strand, within AO353_28980at 6300.372 kb on - strand, within AO353_28980at 6300.372 kb on - strand, within AO353_28980at 6300.394 kb on + strand, within AO353_28980at 6300.394 kb on + strand, within AO353_28980at 6300.395 kb on - strand, within AO353_28980at 6300.395 kb on - strand, within AO353_28980at 6300.418 kb on + strand, within AO353_28980at 6300.418 kb on + strand, within AO353_28980at 6300.418 kb on + strandat 6300.419 kb on - strand, within AO353_28980at 6300.419 kb on - strand, within AO353_28980at 6300.419 kb on - strand, within AO353_28980at 6300.419 kb on - strand, within AO353_28980at 6300.419 kb on - strand, within AO353_28980at 6300.419 kb on - strand, within AO353_28980at 6300.419 kb on - strand, within AO353_28980at 6300.530 kb on + strand, within AO353_28980at 6300.530 kb on + strand, within AO353_28980at 6300.530 kb on + strand, within AO353_28980at 6300.531 kb on - strand, within AO353_28980at 6300.544 kb on + strand, within AO353_28980at 6300.544 kb on + strand, within AO353_28980at 6300.545 kb on - strand, within AO353_28980at 6300.551 kb on + strand, within AO353_28980at 6300.552 kb on - strand, within AO353_28980at 6300.567 kb on + strand, within AO353_28980at 6300.667 kb on + strand, within AO353_28980at 6300.667 kb on + strand, within AO353_28980at 6300.667 kb on + strand, within AO353_28980at 6300.667 kb on + strand, within AO353_28980at 6300.667 kb on + strand, within AO353_28980at 6300.667 kb on + strand, within AO353_28980at 6300.668 kb on - strand, within AO353_28980at 6300.668 kb on - strand, within AO353_28980at 6300.668 kb on - strand, within AO353_28980at 6300.668 kb on - strand, within AO353_28980at 6300.668 kb on - strand, within AO353_28980at 6300.668 kb on - strand, within AO353_28980at 6300.668 kb on - strand, within AO353_28980at 6300.668 kb on - strand, within AO353_28980at 6300.749 kb on + strandat 6300.749 kb on + strandat 6300.749 kb on + strandat 6300.749 kb on + strandat 6300.750 kb on - strandat 6300.750 kb on - strandat 6300.750 kb on - strandat 6300.750 kb on - strandat 6300.750 kb on - strandat 6300.761 kb on + strandat 6300.762 kb on - strandat 6300.762 kb on - strandat 6300.892 kb on + strandat 6300.892 kb on + strandat 6300.892 kb on + strandat 6300.892 kb on + strandat 6300.892 kb on + strandat 6300.892 kb on + strandat 6300.892 kb on + strandat 6300.892 kb on + strandat 6300.892 kb on + strandat 6300.892 kb on + strandat 6300.892 kb on + strandat 6300.893 kb on - strandat 6300.893 kb on - strandat 6300.893 kb on - strandat 6300.893 kb on - strandat 6300.893 kb on - strandat 6300.893 kb on - strandat 6300.893 kb on - strandat 6300.893 kb on - strandat 6300.896 kb on + strandat 6300.896 kb on + strandat 6300.896 kb on + strandat 6300.896 kb on + strandat 6300.896 kb on + strandat 6300.897 kb on - strandat 6300.897 kb on - strandat 6300.897 kb on - strandat 6300.897 kb on - strandat 6300.897 kb on - strandat 6300.897 kb on - strandat 6300.905 kb on + strandat 6300.906 kb on - strandat 6300.906 kb on - strandat 6300.918 kb on + strandat 6300.919 kb on - strandat 6300.930 kb on + strandat 6300.930 kb on + strandat 6300.931 kb on - strandat 6300.931 kb on - strandat 6301.202 kb on + strand, within AO353_28985at 6301.202 kb on + strand, within AO353_28985at 6301.202 kb on + strand, within AO353_28985at 6301.202 kb on + strand, within AO353_28985at 6301.202 kb on + strand, within AO353_28985at 6301.202 kb on + strand, within AO353_28985at 6301.202 kb on + strand, within AO353_28985at 6301.202 kb on + strand, within AO353_28985at 6301.203 kb on - strand, within AO353_28985at 6301.203 kb on - strand, within AO353_28985at 6301.203 kb on - strand, within AO353_28985at 6301.361 kb on - strand, within AO353_28985at 6301.471 kb on + strandat 6301.472 kb on - strandat 6301.486 kb on + strandat 6301.486 kb on + strandat 6301.486 kb on + strandat 6301.725 kb on + strandat 6301.725 kb on + strandat 6301.725 kb on + strandat 6301.725 kb on + strandat 6301.725 kb on + strandat 6301.726 kb on - strandat 6301.726 kb on - strandat 6301.726 kb on - strandat 6301.788 kb on + strandat 6301.879 kb on + strandat 6301.879 kb on + strandat 6301.879 kb on + strandat 6301.879 kb on + strandat 6301.880 kb on - strandat 6301.880 kb on - strandat 6301.880 kb on - strandat 6301.880 kb on - strandat 6302.104 kb on + strand, within AO353_28990at 6302.105 kb on - strand, within AO353_28990at 6302.105 kb on - strand, within AO353_28990at 6302.105 kb on - strand, within AO353_28990at 6302.105 kb on - strand, within AO353_28990at 6302.105 kb on - strand, within AO353_28990at 6302.105 kb on - strand, within AO353_28990at 6302.167 kb on + strand, within AO353_28990at 6302.167 kb on + strand, within AO353_28990at 6302.168 kb on - strand, within AO353_28990at 6302.168 kb on - strand, within AO353_28990at 6302.168 kb on - strand, within AO353_28990at 6302.168 kb on - strand, within AO353_28990at 6302.266 kb on + strand, within AO353_28990at 6302.272 kb on + strand, within AO353_28990at 6302.272 kb on + strand, within AO353_28990at 6302.272 kb on + strand, within AO353_28990at 6302.272 kb on + strand, within AO353_28990at 6302.272 kb on + strand, within AO353_28990at 6302.272 kb on + strand, within AO353_28990at 6302.273 kb on - strand, within AO353_28990at 6302.273 kb on - strand, within AO353_28990at 6302.273 kb on - strand, within AO353_28990at 6302.273 kb on - strand, within AO353_28990

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
remove
6,300,153 - +1.0
6,300,175 + -1.2
6,300,242 + AO353_28980 0.11 +0.4
6,300,318 + AO353_28980 0.24 -1.0
6,300,371 + AO353_28980 0.33 -1.2
6,300,371 + AO353_28980 0.33 -0.4
6,300,371 + AO353_28980 0.33 +0.4
6,300,371 + AO353_28980 0.33 -0.8
6,300,371 + AO353_28980 0.33 -1.2
6,300,371 + AO353_28980 0.33 +1.1
6,300,371 + AO353_28980 0.33 -1.2
6,300,371 + AO353_28980 0.33 +0.0
6,300,371 + AO353_28980 0.33 +0.2
6,300,371 + AO353_28980 0.33 -0.5
6,300,372 - AO353_28980 0.33 -0.9
6,300,372 - AO353_28980 0.33 +2.0
6,300,372 - AO353_28980 0.33 +1.4
6,300,372 - AO353_28980 0.33 +0.4
6,300,372 - AO353_28980 0.33 +0.1
6,300,372 - AO353_28980 0.33 -0.8
6,300,372 - AO353_28980 0.33 -0.8
6,300,372 - AO353_28980 0.33 -1.8
6,300,394 + AO353_28980 0.37 -2.2
6,300,394 + AO353_28980 0.37 +0.4
6,300,395 - AO353_28980 0.37 +1.8
6,300,395 - AO353_28980 0.37 -0.0
6,300,418 + AO353_28980 0.41 -0.2
6,300,418 + AO353_28980 0.41 +2.4
6,300,418 + -1.2
6,300,419 - AO353_28980 0.41 -2.5
6,300,419 - AO353_28980 0.41 -0.0
6,300,419 - AO353_28980 0.41 +0.4
6,300,419 - AO353_28980 0.41 +0.8
6,300,419 - AO353_28980 0.41 +0.8
6,300,419 - AO353_28980 0.41 +0.5
6,300,419 - AO353_28980 0.41 +0.6
6,300,530 + AO353_28980 0.60 +1.5
6,300,530 + AO353_28980 0.60 -0.7
6,300,530 + AO353_28980 0.60 +0.8
6,300,531 - AO353_28980 0.60 +0.6
6,300,544 + AO353_28980 0.62 -0.2
6,300,544 + AO353_28980 0.62 -1.2
6,300,545 - AO353_28980 0.62 -0.3
6,300,551 + AO353_28980 0.63 +0.2
6,300,552 - AO353_28980 0.64 -0.2
6,300,567 + AO353_28980 0.66 -0.6
6,300,667 + AO353_28980 0.83 +0.8
6,300,667 + AO353_28980 0.83 +0.6
6,300,667 + AO353_28980 0.83 -1.8
6,300,667 + AO353_28980 0.83 +0.8
6,300,667 + AO353_28980 0.83 -1.5
6,300,667 + AO353_28980 0.83 -0.8
6,300,668 - AO353_28980 0.83 -0.7
6,300,668 - AO353_28980 0.83 +0.8
6,300,668 - AO353_28980 0.83 -0.2
6,300,668 - AO353_28980 0.83 -1.2
6,300,668 - AO353_28980 0.83 -0.6
6,300,668 - AO353_28980 0.83 +0.1
6,300,668 - AO353_28980 0.83 +2.2
6,300,668 - AO353_28980 0.83 -0.2
6,300,749 + +0.2
6,300,749 + +1.3
6,300,749 + +1.4
6,300,749 + +0.4
6,300,750 - -0.2
6,300,750 - +0.2
6,300,750 - +0.4
6,300,750 - -1.2
6,300,750 - +0.4
6,300,761 + +1.4
6,300,762 - -0.2
6,300,762 - +2.4
6,300,892 + -1.2
6,300,892 + -0.9
6,300,892 + +2.6
6,300,892 + +0.9
6,300,892 + -0.2
6,300,892 + +0.4
6,300,892 + -1.2
6,300,892 + -0.7
6,300,892 + -0.2
6,300,892 + -0.2
6,300,892 + -1.8
6,300,893 - -0.3
6,300,893 - +0.8
6,300,893 - +0.8
6,300,893 - +0.8
6,300,893 - -0.6
6,300,893 - -0.1
6,300,893 - -0.6
6,300,893 - +0.8
6,300,896 + +2.1
6,300,896 + +0.6
6,300,896 + +0.8
6,300,896 + +0.6
6,300,896 + -1.8
6,300,897 - -0.7
6,300,897 - -1.7
6,300,897 - +0.5
6,300,897 - -0.2
6,300,897 - -0.2
6,300,897 - +0.4
6,300,905 + +0.6
6,300,906 - +0.8
6,300,906 - +1.2
6,300,918 + +0.0
6,300,919 - +0.4
6,300,930 + +0.2
6,300,930 + -1.3
6,300,931 - +0.2
6,300,931 - -0.2
6,301,202 + AO353_28985 0.49 -0.4
6,301,202 + AO353_28985 0.49 -1.8
6,301,202 + AO353_28985 0.49 -0.8
6,301,202 + AO353_28985 0.49 +0.2
6,301,202 + AO353_28985 0.49 -1.7
6,301,202 + AO353_28985 0.49 -0.2
6,301,202 + AO353_28985 0.49 -2.4
6,301,202 + AO353_28985 0.49 +0.4
6,301,203 - AO353_28985 0.49 -1.6
6,301,203 - AO353_28985 0.49 +0.4
6,301,203 - AO353_28985 0.49 -0.8
6,301,361 - AO353_28985 0.86 +0.1
6,301,471 + -0.5
6,301,472 - -0.2
6,301,486 + +2.4
6,301,486 + -0.2
6,301,486 + +1.6
6,301,725 + +0.6
6,301,725 + -0.4
6,301,725 + +0.0
6,301,725 + +0.6
6,301,725 + +0.0
6,301,726 - -1.2
6,301,726 - -1.4
6,301,726 - +1.2
6,301,788 + -0.2
6,301,879 + +1.1
6,301,879 + -0.7
6,301,879 + -0.4
6,301,879 + -0.2
6,301,880 - +0.2
6,301,880 - -1.2
6,301,880 - -1.0
6,301,880 - +0.3
6,302,104 + AO353_28990 0.24 +0.2
6,302,105 - AO353_28990 0.24 +0.4
6,302,105 - AO353_28990 0.24 -2.5
6,302,105 - AO353_28990 0.24 -0.2
6,302,105 - AO353_28990 0.24 +0.8
6,302,105 - AO353_28990 0.24 +0.4
6,302,105 - AO353_28990 0.24 +1.4
6,302,167 + AO353_28990 0.29 +0.6
6,302,167 + AO353_28990 0.29 +1.1
6,302,168 - AO353_28990 0.29 +0.1
6,302,168 - AO353_28990 0.29 -1.8
6,302,168 - AO353_28990 0.29 -1.8
6,302,168 - AO353_28990 0.29 +1.0
6,302,266 + AO353_28990 0.36 +0.8
6,302,272 + AO353_28990 0.36 -2.0
6,302,272 + AO353_28990 0.36 -1.4
6,302,272 + AO353_28990 0.36 +0.8
6,302,272 + AO353_28990 0.36 +0.3
6,302,272 + AO353_28990 0.36 -0.2
6,302,272 + AO353_28990 0.36 -0.2
6,302,273 - AO353_28990 0.37 +0.2
6,302,273 - AO353_28990 0.37 -0.2
6,302,273 - AO353_28990 0.37 -0.5
6,302,273 - AO353_28990 0.37 -0.5

Or see this region's nucleotide sequence