Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28615

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28605 and AO353_28610 are separated by 255 nucleotidesAO353_28610 and AO353_28615 are separated by 78 nucleotidesAO353_28615 and AO353_28620 are separated by 192 nucleotides AO353_28605: AO353_28605 - phosphatase, at 6,230,955 to 6,231,890 _28605 AO353_28610: AO353_28610 - lysine transporter LysE, at 6,232,146 to 6,232,766 _28610 AO353_28615: AO353_28615 - MFS transporter, at 6,232,845 to 6,234,371 _28615 AO353_28620: AO353_28620 - LysR family transcriptional regulator, at 6,234,564 to 6,235,424 _28620 Position (kb) 6232 6233 6234 6235Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6232.109 kb on + strandat 6232.110 kb on - strandat 6232.139 kb on + strandat 6232.139 kb on + strandat 6232.139 kb on + strandat 6232.139 kb on + strandat 6232.139 kb on + strandat 6232.139 kb on + strandat 6232.140 kb on - strandat 6232.140 kb on - strandat 6232.140 kb on - strandat 6232.140 kb on - strandat 6232.140 kb on - strandat 6232.140 kb on - strandat 6232.151 kb on + strandat 6232.151 kb on + strandat 6232.152 kb on - strandat 6232.152 kb on - strandat 6232.152 kb on - strandat 6232.152 kb on - strandat 6232.152 kb on - strandat 6232.152 kb on - strandat 6232.160 kb on + strandat 6232.160 kb on + strandat 6232.160 kb on + strandat 6232.160 kb on + strandat 6232.161 kb on - strandat 6232.161 kb on - strandat 6232.161 kb on - strandat 6232.161 kb on - strandat 6232.161 kb on - strandat 6232.161 kb on - strandat 6232.161 kb on - strandat 6232.196 kb on - strandat 6232.253 kb on + strand, within AO353_28610at 6232.253 kb on + strand, within AO353_28610at 6232.253 kb on + strand, within AO353_28610at 6232.254 kb on - strand, within AO353_28610at 6232.254 kb on - strand, within AO353_28610at 6232.300 kb on + strand, within AO353_28610at 6232.300 kb on + strand, within AO353_28610at 6232.301 kb on - strand, within AO353_28610at 6232.301 kb on - strand, within AO353_28610at 6232.301 kb on - strand, within AO353_28610at 6232.301 kb on - strandat 6232.301 kb on - strand, within AO353_28610at 6232.362 kb on + strand, within AO353_28610at 6232.362 kb on + strand, within AO353_28610at 6232.362 kb on + strand, within AO353_28610at 6232.362 kb on + strand, within AO353_28610at 6232.363 kb on - strand, within AO353_28610at 6232.363 kb on - strand, within AO353_28610at 6232.378 kb on - strand, within AO353_28610at 6232.393 kb on - strand, within AO353_28610at 6232.393 kb on - strand, within AO353_28610at 6232.434 kb on - strand, within AO353_28610at 6232.434 kb on - strand, within AO353_28610at 6232.533 kb on + strand, within AO353_28610at 6232.533 kb on + strand, within AO353_28610at 6232.534 kb on - strand, within AO353_28610at 6232.534 kb on - strand, within AO353_28610at 6232.534 kb on - strand, within AO353_28610at 6232.534 kb on - strand, within AO353_28610at 6232.557 kb on - strand, within AO353_28610at 6232.683 kb on - strand, within AO353_28610at 6232.775 kb on + strandat 6232.776 kb on - strandat 6232.776 kb on - strandat 6232.806 kb on + strandat 6232.903 kb on - strandat 6232.927 kb on + strandat 6233.025 kb on - strand, within AO353_28615at 6233.025 kb on - strand, within AO353_28615at 6233.037 kb on - strand, within AO353_28615at 6233.082 kb on + strandat 6233.082 kb on + strand, within AO353_28615at 6233.082 kb on + strand, within AO353_28615at 6233.082 kb on + strand, within AO353_28615at 6233.082 kb on + strand, within AO353_28615at 6233.083 kb on - strand, within AO353_28615at 6233.083 kb on - strand, within AO353_28615at 6233.083 kb on - strand, within AO353_28615at 6233.083 kb on - strand, within AO353_28615at 6233.083 kb on - strand, within AO353_28615at 6233.083 kb on - strand, within AO353_28615at 6233.095 kb on - strand, within AO353_28615at 6233.108 kb on + strand, within AO353_28615at 6233.108 kb on + strand, within AO353_28615at 6233.108 kb on + strand, within AO353_28615at 6233.109 kb on - strand, within AO353_28615at 6233.109 kb on - strand, within AO353_28615at 6233.109 kb on - strand, within AO353_28615at 6233.162 kb on + strand, within AO353_28615at 6233.162 kb on + strand, within AO353_28615at 6233.162 kb on + strand, within AO353_28615at 6233.163 kb on - strand, within AO353_28615at 6233.163 kb on - strand, within AO353_28615at 6233.163 kb on - strand, within AO353_28615at 6233.163 kb on - strand, within AO353_28615at 6233.163 kb on - strand, within AO353_28615at 6233.163 kb on - strand, within AO353_28615at 6233.229 kb on - strand, within AO353_28615at 6233.235 kb on - strand, within AO353_28615at 6233.243 kb on + strand, within AO353_28615at 6233.352 kb on + strand, within AO353_28615at 6233.352 kb on + strand, within AO353_28615at 6233.352 kb on + strand, within AO353_28615at 6233.352 kb on + strand, within AO353_28615at 6233.352 kb on + strand, within AO353_28615at 6233.353 kb on - strand, within AO353_28615at 6233.353 kb on - strand, within AO353_28615at 6233.353 kb on - strand, within AO353_28615at 6233.353 kb on - strand, within AO353_28615at 6233.353 kb on - strand, within AO353_28615at 6233.445 kb on - strand, within AO353_28615at 6233.446 kb on + strand, within AO353_28615at 6233.446 kb on + strand, within AO353_28615at 6233.447 kb on - strand, within AO353_28615at 6233.447 kb on - strand, within AO353_28615at 6233.515 kb on + strand, within AO353_28615at 6233.515 kb on + strand, within AO353_28615at 6233.515 kb on + strand, within AO353_28615at 6233.516 kb on - strand, within AO353_28615at 6233.516 kb on - strand, within AO353_28615at 6233.516 kb on - strand, within AO353_28615at 6233.516 kb on - strand, within AO353_28615at 6233.762 kb on + strand, within AO353_28615at 6233.762 kb on + strand, within AO353_28615at 6233.762 kb on + strand, within AO353_28615at 6233.762 kb on + strand, within AO353_28615at 6233.762 kb on + strand, within AO353_28615at 6233.762 kb on + strand, within AO353_28615at 6233.762 kb on + strand, within AO353_28615at 6233.762 kb on + strand, within AO353_28615at 6233.762 kb on + strand, within AO353_28615at 6233.762 kb on + strand, within AO353_28615at 6233.763 kb on - strand, within AO353_28615at 6233.763 kb on - strand, within AO353_28615at 6233.763 kb on - strand, within AO353_28615at 6233.763 kb on - strand, within AO353_28615at 6233.763 kb on - strand, within AO353_28615at 6233.892 kb on + strand, within AO353_28615at 6233.892 kb on + strand, within AO353_28615at 6233.898 kb on - strand, within AO353_28615at 6233.910 kb on - strand, within AO353_28615at 6234.042 kb on - strand, within AO353_28615at 6234.042 kb on - strandat 6234.042 kb on - strand, within AO353_28615at 6234.042 kb on - strand, within AO353_28615at 6234.042 kb on - strand, within AO353_28615at 6234.042 kb on - strand, within AO353_28615at 6234.107 kb on + strand, within AO353_28615at 6234.107 kb on + strand, within AO353_28615at 6234.108 kb on - strand, within AO353_28615at 6234.108 kb on - strand, within AO353_28615at 6234.108 kb on - strand, within AO353_28615at 6234.169 kb on - strand, within AO353_28615at 6234.169 kb on - strand, within AO353_28615at 6234.184 kb on - strand, within AO353_28615at 6234.187 kb on - strand, within AO353_28615at 6234.187 kb on - strand, within AO353_28615at 6234.208 kb on + strand, within AO353_28615at 6234.208 kb on + strand, within AO353_28615at 6234.208 kb on + strand, within AO353_28615at 6234.208 kb on + strand, within AO353_28615at 6234.209 kb on - strand, within AO353_28615at 6234.228 kb on + strandat 6234.228 kb on + strandat 6234.228 kb on + strandat 6234.228 kb on + strandat 6234.228 kb on + strandat 6234.228 kb on + strandat 6234.229 kb on - strandat 6234.229 kb on - strandat 6234.229 kb on - strandat 6234.229 kb on - strandat 6234.229 kb on - strandat 6234.229 kb on - strandat 6234.229 kb on - strandat 6234.229 kb on - strandat 6234.229 kb on - strandat 6234.230 kb on + strandat 6234.230 kb on + strandat 6234.231 kb on - strandat 6234.231 kb on - strandat 6234.231 kb on - strandat 6234.231 kb on - strandat 6234.472 kb on + strandat 6234.472 kb on + strandat 6234.473 kb on - strandat 6234.473 kb on - strandat 6234.473 kb on - strandat 6234.523 kb on - strandat 6234.531 kb on - strandat 6234.562 kb on + strandat 6234.562 kb on + strandat 6234.922 kb on + strand, within AO353_28620at 6234.922 kb on + strand, within AO353_28620at 6234.923 kb on - strand, within AO353_28620at 6234.923 kb on - strand, within AO353_28620at 6234.923 kb on - strand, within AO353_28620at 6234.923 kb on - strand, within AO353_28620at 6234.934 kb on + strand, within AO353_28620at 6234.934 kb on + strand, within AO353_28620at 6234.934 kb on + strand, within AO353_28620at 6234.934 kb on + strand, within AO353_28620at 6234.934 kb on + strand, within AO353_28620at 6234.935 kb on - strand, within AO353_28620at 6234.935 kb on - strand, within AO353_28620at 6234.935 kb on - strand, within AO353_28620at 6234.935 kb on - strand, within AO353_28620at 6234.935 kb on - strand, within AO353_28620at 6234.935 kb on - strand, within AO353_28620at 6234.935 kb on - strand, within AO353_28620at 6234.935 kb on - strand, within AO353_28620at 6234.935 kb on - strand, within AO353_28620at 6234.935 kb on - strand, within AO353_28620at 6234.949 kb on - strand, within AO353_28620at 6234.949 kb on - strand, within AO353_28620at 6235.193 kb on + strand, within AO353_28620at 6235.193 kb on + strand, within AO353_28620at 6235.193 kb on + strand, within AO353_28620at 6235.280 kb on + strand, within AO353_28620at 6235.281 kb on - strand, within AO353_28620

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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6,232,109 + +0.7
6,232,110 - -1.0
6,232,139 + -0.2
6,232,139 + -1.7
6,232,139 + -0.2
6,232,139 + +0.4
6,232,139 + -1.2
6,232,139 + +0.3
6,232,140 - +0.0
6,232,140 - +0.8
6,232,140 - -0.4
6,232,140 - +2.0
6,232,140 - -0.5
6,232,140 - +0.2
6,232,151 + -1.2
6,232,151 + -1.6
6,232,152 - -1.2
6,232,152 - -0.9
6,232,152 - -0.7
6,232,152 - -0.5
6,232,152 - -0.2
6,232,152 - -0.2
6,232,160 + -0.4
6,232,160 + -2.5
6,232,160 + -0.7
6,232,160 + -0.6
6,232,161 - -1.2
6,232,161 - -0.7
6,232,161 - -0.6
6,232,161 - -2.6
6,232,161 - -0.6
6,232,161 - +1.4
6,232,161 - +0.3
6,232,196 - +0.6
6,232,253 + AO353_28610 0.17 +0.4
6,232,253 + AO353_28610 0.17 +1.4
6,232,253 + AO353_28610 0.17 -0.2
6,232,254 - AO353_28610 0.17 -0.4
6,232,254 - AO353_28610 0.17 -0.2
6,232,300 + AO353_28610 0.25 +0.8
6,232,300 + AO353_28610 0.25 +0.2
6,232,301 - AO353_28610 0.25 +1.4
6,232,301 - AO353_28610 0.25 -1.6
6,232,301 - AO353_28610 0.25 +0.7
6,232,301 - -1.2
6,232,301 - AO353_28610 0.25 +0.4
6,232,362 + AO353_28610 0.35 +1.4
6,232,362 + AO353_28610 0.35 -0.6
6,232,362 + AO353_28610 0.35 -0.2
6,232,362 + AO353_28610 0.35 -1.2
6,232,363 - AO353_28610 0.35 +0.5
6,232,363 - AO353_28610 0.35 -0.2
6,232,378 - AO353_28610 0.37 +0.6
6,232,393 - AO353_28610 0.40 +0.3
6,232,393 - AO353_28610 0.40 +0.6
6,232,434 - AO353_28610 0.46 +0.3
6,232,434 - AO353_28610 0.46 -2.2
6,232,533 + AO353_28610 0.62 -0.2
6,232,533 + AO353_28610 0.62 -0.1
6,232,534 - AO353_28610 0.62 -0.2
6,232,534 - AO353_28610 0.62 -0.9
6,232,534 - AO353_28610 0.62 -0.2
6,232,534 - AO353_28610 0.62 +0.0
6,232,557 - AO353_28610 0.66 +1.4
6,232,683 - AO353_28610 0.86 +2.2
6,232,775 + -1.2
6,232,776 - +0.0
6,232,776 - +1.4
6,232,806 + -0.8
6,232,903 - -0.8
6,232,927 + +1.8
6,233,025 - AO353_28615 0.12 -0.6
6,233,025 - AO353_28615 0.12 -0.5
6,233,037 - AO353_28615 0.13 +0.8
6,233,082 + +1.6
6,233,082 + AO353_28615 0.16 -1.0
6,233,082 + AO353_28615 0.16 -0.2
6,233,082 + AO353_28615 0.16 +2.0
6,233,082 + AO353_28615 0.16 +1.4
6,233,083 - AO353_28615 0.16 -1.0
6,233,083 - AO353_28615 0.16 +0.8
6,233,083 - AO353_28615 0.16 +1.2
6,233,083 - AO353_28615 0.16 -0.6
6,233,083 - AO353_28615 0.16 -0.6
6,233,083 - AO353_28615 0.16 -0.7
6,233,095 - AO353_28615 0.16 -0.4
6,233,108 + AO353_28615 0.17 +0.2
6,233,108 + AO353_28615 0.17 +0.3
6,233,108 + AO353_28615 0.17 +0.1
6,233,109 - AO353_28615 0.17 -1.2
6,233,109 - AO353_28615 0.17 +0.3
6,233,109 - AO353_28615 0.17 +0.4
6,233,162 + AO353_28615 0.21 -1.2
6,233,162 + AO353_28615 0.21 +2.2
6,233,162 + AO353_28615 0.21 +0.6
6,233,163 - AO353_28615 0.21 +0.3
6,233,163 - AO353_28615 0.21 -0.4
6,233,163 - AO353_28615 0.21 -0.4
6,233,163 - AO353_28615 0.21 -0.5
6,233,163 - AO353_28615 0.21 -0.6
6,233,163 - AO353_28615 0.21 +2.2
6,233,229 - AO353_28615 0.25 -1.4
6,233,235 - AO353_28615 0.26 -0.7
6,233,243 + AO353_28615 0.26 +0.4
6,233,352 + AO353_28615 0.33 -0.5
6,233,352 + AO353_28615 0.33 +1.0
6,233,352 + AO353_28615 0.33 -1.2
6,233,352 + AO353_28615 0.33 -0.2
6,233,352 + AO353_28615 0.33 -0.4
6,233,353 - AO353_28615 0.33 +1.2
6,233,353 - AO353_28615 0.33 -0.2
6,233,353 - AO353_28615 0.33 +0.3
6,233,353 - AO353_28615 0.33 +2.8
6,233,353 - AO353_28615 0.33 +2.5
6,233,445 - AO353_28615 0.39 -1.0
6,233,446 + AO353_28615 0.39 +1.0
6,233,446 + AO353_28615 0.39 +1.7
6,233,447 - AO353_28615 0.39 -1.9
6,233,447 - AO353_28615 0.39 -1.2
6,233,515 + AO353_28615 0.44 +1.6
6,233,515 + AO353_28615 0.44 -1.2
6,233,515 + AO353_28615 0.44 +2.2
6,233,516 - AO353_28615 0.44 +0.8
6,233,516 - AO353_28615 0.44 -1.0
6,233,516 - AO353_28615 0.44 -0.2
6,233,516 - AO353_28615 0.44 +0.2
6,233,762 + AO353_28615 0.60 +1.1
6,233,762 + AO353_28615 0.60 -0.8
6,233,762 + AO353_28615 0.60 -1.0
6,233,762 + AO353_28615 0.60 +0.0
6,233,762 + AO353_28615 0.60 +0.6
6,233,762 + AO353_28615 0.60 +1.8
6,233,762 + AO353_28615 0.60 -0.7
6,233,762 + AO353_28615 0.60 -0.6
6,233,762 + AO353_28615 0.60 -1.4
6,233,762 + AO353_28615 0.60 +0.4
6,233,763 - AO353_28615 0.60 +0.6
6,233,763 - AO353_28615 0.60 +1.3
6,233,763 - AO353_28615 0.60 -0.8
6,233,763 - AO353_28615 0.60 +0.1
6,233,763 - AO353_28615 0.60 +2.6
6,233,892 + AO353_28615 0.69 +0.4
6,233,892 + AO353_28615 0.69 -0.7
6,233,898 - AO353_28615 0.69 +0.8
6,233,910 - AO353_28615 0.70 -0.7
6,234,042 - AO353_28615 0.78 -0.3
6,234,042 - -0.2
6,234,042 - AO353_28615 0.78 +1.0
6,234,042 - AO353_28615 0.78 +1.8
6,234,042 - AO353_28615 0.78 -0.2
6,234,042 - AO353_28615 0.78 +1.1
6,234,107 + AO353_28615 0.83 -2.2
6,234,107 + AO353_28615 0.83 -0.2
6,234,108 - AO353_28615 0.83 -0.9
6,234,108 - AO353_28615 0.83 +0.7
6,234,108 - AO353_28615 0.83 +1.3
6,234,169 - AO353_28615 0.87 +1.4
6,234,169 - AO353_28615 0.87 -0.0
6,234,184 - AO353_28615 0.88 +2.6
6,234,187 - AO353_28615 0.88 -0.2
6,234,187 - AO353_28615 0.88 +0.0
6,234,208 + AO353_28615 0.89 +0.6
6,234,208 + AO353_28615 0.89 +0.4
6,234,208 + AO353_28615 0.89 +0.5
6,234,208 + AO353_28615 0.89 -1.0
6,234,209 - AO353_28615 0.89 -0.7
6,234,228 + -0.7
6,234,228 + -1.2
6,234,228 + -0.2
6,234,228 + +2.4
6,234,228 + +1.2
6,234,228 + -0.3
6,234,229 - -1.3
6,234,229 - +1.6
6,234,229 - +0.6
6,234,229 - -1.2
6,234,229 - +1.0
6,234,229 - +1.2
6,234,229 - +0.7
6,234,229 - +0.2
6,234,229 - -1.7
6,234,230 + -0.4
6,234,230 + -0.6
6,234,231 - -0.9
6,234,231 - -0.7
6,234,231 - +0.3
6,234,231 - -2.2
6,234,472 + +0.2
6,234,472 + +1.2
6,234,473 - +0.3
6,234,473 - -0.6
6,234,473 - +0.1
6,234,523 - -0.2
6,234,531 - -0.9
6,234,562 + -0.6
6,234,562 + -1.7
6,234,922 + AO353_28620 0.42 -1.4
6,234,922 + AO353_28620 0.42 +1.2
6,234,923 - AO353_28620 0.42 -0.6
6,234,923 - AO353_28620 0.42 -1.2
6,234,923 - AO353_28620 0.42 +0.6
6,234,923 - AO353_28620 0.42 -0.2
6,234,934 + AO353_28620 0.43 -0.2
6,234,934 + AO353_28620 0.43 +0.6
6,234,934 + AO353_28620 0.43 +0.4
6,234,934 + AO353_28620 0.43 +1.4
6,234,934 + AO353_28620 0.43 -1.2
6,234,935 - AO353_28620 0.43 -0.2
6,234,935 - AO353_28620 0.43 -1.6
6,234,935 - AO353_28620 0.43 -0.2
6,234,935 - AO353_28620 0.43 +0.5
6,234,935 - AO353_28620 0.43 +0.6
6,234,935 - AO353_28620 0.43 -1.2
6,234,935 - AO353_28620 0.43 +1.2
6,234,935 - AO353_28620 0.43 -0.2
6,234,935 - AO353_28620 0.43 +0.4
6,234,935 - AO353_28620 0.43 -1.7
6,234,949 - AO353_28620 0.45 -1.5
6,234,949 - AO353_28620 0.45 +2.0
6,235,193 + AO353_28620 0.73 -0.9
6,235,193 + AO353_28620 0.73 +0.7
6,235,193 + AO353_28620 0.73 +0.8
6,235,280 + AO353_28620 0.83 +1.0
6,235,281 - AO353_28620 0.83 +0.7

Or see this region's nucleotide sequence