Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28520

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28515 and AO353_28520 are separated by 315 nucleotidesAO353_28520 and AO353_28525 are separated by 111 nucleotides AO353_28515: AO353_28515 - malate:quinone oxidoreductase, at 6,212,599 to 6,214,248 _28515 AO353_28520: AO353_28520 - LysR family transcriptional regulator, at 6,214,564 to 6,215,445 _28520 AO353_28525: AO353_28525 - oxidoreductase, at 6,215,557 to 6,216,576 _28525 Position (kb) 6214 6215 6216Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6213.577 kb on + strand, within AO353_28515at 6213.986 kb on + strand, within AO353_28515at 6213.986 kb on + strand, within AO353_28515at 6213.987 kb on - strand, within AO353_28515at 6214.112 kb on + strandat 6214.254 kb on - strandat 6214.256 kb on + strandat 6214.256 kb on + strandat 6214.256 kb on + strandat 6214.256 kb on + strandat 6214.257 kb on - strandat 6214.257 kb on - strandat 6214.257 kb on - strandat 6214.257 kb on - strandat 6214.257 kb on - strandat 6214.260 kb on + strandat 6214.260 kb on + strandat 6214.260 kb on + strandat 6214.265 kb on + strandat 6214.265 kb on + strandat 6214.265 kb on + strandat 6214.266 kb on - strandat 6214.281 kb on + strandat 6214.281 kb on + strandat 6214.281 kb on + strandat 6214.282 kb on - strandat 6214.282 kb on - strandat 6214.282 kb on - strandat 6214.282 kb on - strandat 6214.366 kb on - strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.371 kb on + strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.372 kb on - strandat 6214.373 kb on + strandat 6214.373 kb on + strandat 6214.373 kb on + strandat 6214.373 kb on + strandat 6214.373 kb on + strandat 6214.373 kb on + strandat 6214.373 kb on + strandat 6214.373 kb on + strandat 6214.373 kb on + strandat 6214.373 kb on + strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.374 kb on - strandat 6214.404 kb on + strandat 6214.405 kb on - strandat 6214.429 kb on - strandat 6214.431 kb on + strandat 6214.431 kb on + strandat 6214.432 kb on - strandat 6214.432 kb on - strandat 6214.462 kb on + strandat 6214.462 kb on + strandat 6214.463 kb on - strandat 6214.463 kb on - strandat 6214.463 kb on - strandat 6214.463 kb on - strandat 6214.463 kb on - strandat 6214.474 kb on + strandat 6214.480 kb on - strandat 6214.525 kb on + strandat 6214.525 kb on + strandat 6214.525 kb on + strandat 6214.526 kb on - strandat 6214.526 kb on - strandat 6214.673 kb on + strand, within AO353_28520at 6214.673 kb on + strand, within AO353_28520at 6214.673 kb on + strand, within AO353_28520at 6214.674 kb on - strand, within AO353_28520at 6214.674 kb on - strand, within AO353_28520at 6214.734 kb on + strand, within AO353_28520at 6214.734 kb on + strand, within AO353_28520at 6214.882 kb on - strand, within AO353_28520at 6214.925 kb on + strand, within AO353_28520at 6214.926 kb on - strand, within AO353_28520at 6214.950 kb on - strand, within AO353_28520at 6214.974 kb on - strand, within AO353_28520at 6215.095 kb on - strand, within AO353_28520at 6215.095 kb on - strand, within AO353_28520at 6215.176 kb on + strand, within AO353_28520at 6215.177 kb on - strand, within AO353_28520at 6215.177 kb on - strand, within AO353_28520at 6215.180 kb on - strand, within AO353_28520at 6215.343 kb on + strand, within AO353_28520at 6215.343 kb on + strand, within AO353_28520at 6215.344 kb on - strand, within AO353_28520at 6215.408 kb on - strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.447 kb on + strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.448 kb on - strandat 6215.521 kb on + strandat 6215.521 kb on + strandat 6215.521 kb on + strandat 6215.521 kb on + strandat 6215.521 kb on + strandat 6215.521 kb on + strandat 6215.521 kb on + strandat 6215.521 kb on + strandat 6215.521 kb on + strandat 6215.522 kb on - strandat 6215.522 kb on - strandat 6215.522 kb on - strandat 6215.522 kb on - strandat 6215.522 kb on - strandat 6215.522 kb on - strandat 6215.522 kb on - strandat 6215.523 kb on + strandat 6215.523 kb on + strandat 6215.523 kb on + strandat 6215.523 kb on + strandat 6215.523 kb on + strandat 6215.523 kb on + strandat 6215.523 kb on + strandat 6215.524 kb on - strandat 6215.524 kb on - strandat 6215.524 kb on - strandat 6215.524 kb on - strandat 6215.524 kb on - strandat 6215.524 kb on - strandat 6215.527 kb on + strandat 6215.527 kb on + strandat 6215.528 kb on - strandat 6215.528 kb on - strandat 6215.528 kb on - strandat 6215.528 kb on - strandat 6215.528 kb on - strandat 6215.537 kb on - strandat 6215.537 kb on - strandat 6215.545 kb on + strandat 6215.545 kb on + strandat 6215.545 kb on + strandat 6215.546 kb on - strandat 6215.546 kb on - strandat 6215.546 kb on - strandat 6215.546 kb on - strandat 6215.546 kb on - strandat 6215.546 kb on - strandat 6215.565 kb on + strandat 6215.565 kb on + strandat 6215.565 kb on + strandat 6215.565 kb on + strandat 6215.565 kb on + strandat 6215.565 kb on + strandat 6215.566 kb on - strandat 6215.566 kb on - strandat 6215.566 kb on - strandat 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.800 kb on + strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.801 kb on - strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.875 kb on + strand, within AO353_28525at 6215.876 kb on - strand, within AO353_28525at 6215.876 kb on - strand, within AO353_28525at 6215.876 kb on - strand, within AO353_28525at 6215.876 kb on - strand, within AO353_28525at 6216.125 kb on + strand, within AO353_28525at 6216.125 kb on + strand, within AO353_28525at 6216.126 kb on - strand, within AO353_28525at 6216.126 kb on - strand, within AO353_28525at 6216.126 kb on - strand, within AO353_28525at 6216.126 kb on - strand, within AO353_28525at 6216.147 kb on + strand, within AO353_28525at 6216.147 kb on + strand, within AO353_28525at 6216.147 kb on + strand, within AO353_28525at 6216.148 kb on - strand, within AO353_28525at 6216.148 kb on - strandat 6216.308 kb on + strand, within AO353_28525at 6216.309 kb on - strand, within AO353_28525at 6216.355 kb on + strand, within AO353_28525at 6216.356 kb on - strand, within AO353_28525at 6216.382 kb on + strand, within AO353_28525at 6216.382 kb on + strand, within AO353_28525at 6216.382 kb on + strand, within AO353_28525at 6216.382 kb on + strand, within AO353_28525at 6216.383 kb on - strand, within AO353_28525

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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6,213,577 + AO353_28515 0.59 +1.2
6,213,986 + AO353_28515 0.84 +0.0
6,213,986 + AO353_28515 0.84 -0.2
6,213,987 - AO353_28515 0.84 +0.4
6,214,112 + -0.2
6,214,254 - +0.3
6,214,256 + -1.7
6,214,256 + -0.2
6,214,256 + +1.6
6,214,256 + -0.7
6,214,257 - +0.5
6,214,257 - +1.4
6,214,257 - -0.9
6,214,257 - +1.6
6,214,257 - -0.2
6,214,260 + +0.8
6,214,260 + -1.9
6,214,260 + +2.3
6,214,265 + +0.4
6,214,265 + +1.0
6,214,265 + -1.7
6,214,266 - -1.2
6,214,281 + +0.3
6,214,281 + -1.2
6,214,281 + +0.4
6,214,282 - -1.7
6,214,282 - +2.4
6,214,282 - -1.7
6,214,282 - +0.1
6,214,366 - -2.5
6,214,371 + -1.7
6,214,371 + +0.5
6,214,371 + -0.7
6,214,371 + +1.6
6,214,371 + +0.6
6,214,371 + +2.2
6,214,371 + -1.2
6,214,371 + +1.4
6,214,371 + +0.2
6,214,371 + +0.6
6,214,371 + +0.8
6,214,371 + +1.2
6,214,371 + +0.4
6,214,371 + -0.7
6,214,371 + +0.0
6,214,371 + -1.7
6,214,372 - -0.8
6,214,372 - +0.8
6,214,372 - -0.2
6,214,372 - -0.2
6,214,372 - -0.2
6,214,372 - -0.2
6,214,372 - -0.9
6,214,372 - -1.0
6,214,372 - -0.4
6,214,372 - -0.2
6,214,372 - +0.2
6,214,372 - +0.6
6,214,372 - -1.5
6,214,372 - +0.5
6,214,372 - +2.3
6,214,372 - +0.8
6,214,372 - +1.4
6,214,372 - +1.4
6,214,372 - -0.9
6,214,372 - -0.8
6,214,372 - -0.2
6,214,372 - -0.4
6,214,372 - -0.6
6,214,372 - -0.2
6,214,372 - +0.0
6,214,372 - +0.2
6,214,373 + +0.8
6,214,373 + -2.5
6,214,373 + -0.6
6,214,373 + -0.2
6,214,373 + +0.2
6,214,373 + -0.5
6,214,373 + +1.1
6,214,373 + -0.2
6,214,373 + -2.7
6,214,373 + +2.2
6,214,374 - +0.3
6,214,374 - -0.9
6,214,374 - -0.5
6,214,374 - +0.5
6,214,374 - +0.0
6,214,374 - -0.6
6,214,374 - -0.7
6,214,374 - +1.8
6,214,374 - -0.2
6,214,374 - +0.2
6,214,374 - +0.4
6,214,374 - +0.5
6,214,374 - -0.4
6,214,404 + +0.3
6,214,405 - -2.2
6,214,429 - +1.4
6,214,431 + -1.2
6,214,431 + -0.7
6,214,432 - -0.9
6,214,432 - +0.3
6,214,462 + +0.0
6,214,462 + +0.2
6,214,463 - +0.3
6,214,463 - +0.2
6,214,463 - +0.3
6,214,463 - -0.6
6,214,463 - +0.2
6,214,474 + -0.4
6,214,480 - -0.8
6,214,525 + -0.2
6,214,525 + -1.2
6,214,525 + -0.2
6,214,526 - +0.4
6,214,526 - +2.6
6,214,673 + AO353_28520 0.12 +0.8
6,214,673 + AO353_28520 0.12 -0.2
6,214,673 + AO353_28520 0.12 -1.6
6,214,674 - AO353_28520 0.12 -3.0
6,214,674 - AO353_28520 0.12 +0.5
6,214,734 + AO353_28520 0.19 +0.8
6,214,734 + AO353_28520 0.19 +0.8
6,214,882 - AO353_28520 0.36 +1.7
6,214,925 + AO353_28520 0.41 +0.5
6,214,926 - AO353_28520 0.41 -0.5
6,214,950 - AO353_28520 0.44 -1.2
6,214,974 - AO353_28520 0.46 -0.2
6,215,095 - AO353_28520 0.60 -1.1
6,215,095 - AO353_28520 0.60 +0.1
6,215,176 + AO353_28520 0.69 +2.6
6,215,177 - AO353_28520 0.70 +1.2
6,215,177 - AO353_28520 0.70 -0.2
6,215,180 - AO353_28520 0.70 +0.8
6,215,343 + AO353_28520 0.88 +1.6
6,215,343 + AO353_28520 0.88 +1.0
6,215,344 - AO353_28520 0.88 -0.6
6,215,408 - +2.8
6,215,447 + -1.2
6,215,447 + +0.8
6,215,447 + -1.2
6,215,447 + +0.8
6,215,447 + -0.5
6,215,447 + +1.1
6,215,447 + -0.7
6,215,447 + -0.2
6,215,447 + +0.8
6,215,447 + -0.4
6,215,447 + -0.2
6,215,447 + +0.8
6,215,448 - +0.2
6,215,448 - -0.5
6,215,448 - +1.1
6,215,448 - -0.2
6,215,448 - +1.3
6,215,448 - +0.6
6,215,448 - +0.2
6,215,448 - +1.4
6,215,448 - -0.6
6,215,448 - +1.0
6,215,448 - -0.2
6,215,448 - -0.0
6,215,448 - +0.6
6,215,448 - -0.6
6,215,448 - -0.2
6,215,448 - -1.2
6,215,448 - +0.4
6,215,448 - +1.1
6,215,521 + +0.9
6,215,521 + +0.6
6,215,521 + -0.2
6,215,521 + +0.8
6,215,521 + +1.6
6,215,521 + -0.9
6,215,521 + +1.4
6,215,521 + +0.5
6,215,521 + +0.8
6,215,522 - +0.3
6,215,522 - -0.6
6,215,522 - -2.5
6,215,522 - +0.3
6,215,522 - +1.6
6,215,522 - +0.4
6,215,522 - +1.4
6,215,523 + +0.1
6,215,523 + +0.2
6,215,523 + -1.2
6,215,523 + -0.2
6,215,523 + -2.3
6,215,523 + -0.2
6,215,523 + -0.2
6,215,524 - -1.7
6,215,524 - +2.6
6,215,524 - -0.4
6,215,524 - +0.2
6,215,524 - -1.9
6,215,524 - -0.4
6,215,527 + +1.0
6,215,527 + -0.6
6,215,528 - -0.2
6,215,528 - +0.2
6,215,528 - -1.5
6,215,528 - +0.7
6,215,528 - -0.8
6,215,537 - +0.1
6,215,537 - -0.6
6,215,545 + +1.8
6,215,545 + -1.2
6,215,545 + -0.6
6,215,546 - +0.8
6,215,546 - +0.2
6,215,546 - +0.6
6,215,546 - -0.9
6,215,546 - -0.8
6,215,546 - -0.7
6,215,565 + -1.7
6,215,565 + -1.7
6,215,565 + +2.3
6,215,565 + -0.5
6,215,565 + -1.2
6,215,565 + -3.2
6,215,566 - -2.0
6,215,566 - +0.5
6,215,566 - -1.5
6,215,800 + AO353_28525 0.24 +1.4
6,215,800 + AO353_28525 0.24 +0.5
6,215,800 + AO353_28525 0.24 -0.2
6,215,800 + AO353_28525 0.24 -0.6
6,215,800 + AO353_28525 0.24 -1.2
6,215,800 + AO353_28525 0.24 +0.3
6,215,800 + AO353_28525 0.24 -0.4
6,215,801 - AO353_28525 0.24 -0.2
6,215,801 - AO353_28525 0.24 -1.2
6,215,801 - AO353_28525 0.24 +2.2
6,215,801 - AO353_28525 0.24 -0.4
6,215,801 - AO353_28525 0.24 +0.6
6,215,801 - AO353_28525 0.24 -1.2
6,215,801 - AO353_28525 0.24 -1.4
6,215,801 - AO353_28525 0.24 -1.7
6,215,875 + AO353_28525 0.31 +0.4
6,215,875 + AO353_28525 0.31 +1.4
6,215,875 + AO353_28525 0.31 +0.3
6,215,875 + AO353_28525 0.31 +0.7
6,215,875 + AO353_28525 0.31 -0.2
6,215,875 + AO353_28525 0.31 -1.3
6,215,876 - AO353_28525 0.31 -0.4
6,215,876 - AO353_28525 0.31 +0.1
6,215,876 - AO353_28525 0.31 -0.4
6,215,876 - AO353_28525 0.31 -1.0
6,216,125 + AO353_28525 0.56 -0.7
6,216,125 + AO353_28525 0.56 +0.4
6,216,126 - AO353_28525 0.56 -0.2
6,216,126 - AO353_28525 0.56 +1.1
6,216,126 - AO353_28525 0.56 +0.3
6,216,126 - AO353_28525 0.56 +1.0
6,216,147 + AO353_28525 0.58 -0.0
6,216,147 + AO353_28525 0.58 +1.4
6,216,147 + AO353_28525 0.58 +0.8
6,216,148 - AO353_28525 0.58 +0.3
6,216,148 - +2.4
6,216,308 + AO353_28525 0.74 -0.7
6,216,309 - AO353_28525 0.74 -0.7
6,216,355 + AO353_28525 0.78 +0.8
6,216,356 - AO353_28525 0.78 -1.7
6,216,382 + AO353_28525 0.81 -0.4
6,216,382 + AO353_28525 0.81 -0.2
6,216,382 + AO353_28525 0.81 -0.2
6,216,382 + AO353_28525 0.81 -1.7
6,216,383 - AO353_28525 0.81 +0.4

Or see this region's nucleotide sequence