Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28280

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28275 and AO353_28280 are separated by 55 nucleotidesAO353_28280 and AO353_28285 are separated by 225 nucleotidesAO353_28285 and AO353_28290 are separated by 131 nucleotides AO353_28275: AO353_28275 - FAD-dependent oxidoreductase, at 6,164,084 to 6,165,358 _28275 AO353_28280: AO353_28280 - dehalogenase, at 6,165,414 to 6,166,082 _28280 AO353_28285: AO353_28285 - hypothetical protein, at 6,166,308 to 6,166,502 _28285 AO353_28290: AO353_28290 - aldehyde dehydrogenase, at 6,166,634 to 6,168,106 _28290 Position (kb) 6165 6166 6167Strain fitness (log2 ratio) -2 -1 0 1 2at 6164.502 kb on + strand, within AO353_28275at 6164.502 kb on + strand, within AO353_28275at 6164.502 kb on + strand, within AO353_28275at 6164.502 kb on + strand, within AO353_28275at 6164.503 kb on - strand, within AO353_28275at 6164.503 kb on - strand, within AO353_28275at 6164.503 kb on - strand, within AO353_28275at 6164.529 kb on + strand, within AO353_28275at 6164.529 kb on + strand, within AO353_28275at 6164.529 kb on + strand, within AO353_28275at 6164.529 kb on + strand, within AO353_28275at 6164.529 kb on + strand, within AO353_28275at 6164.529 kb on + strand, within AO353_28275at 6164.529 kb on + strand, within AO353_28275at 6164.529 kb on + strand, within AO353_28275at 6164.529 kb on + strand, within AO353_28275at 6164.530 kb on - strand, within AO353_28275at 6164.530 kb on - strand, within AO353_28275at 6164.530 kb on - strand, within AO353_28275at 6164.530 kb on - strand, within AO353_28275at 6164.530 kb on - strand, within AO353_28275at 6164.757 kb on + strand, within AO353_28275at 6164.757 kb on + strand, within AO353_28275at 6164.757 kb on + strand, within AO353_28275at 6164.757 kb on + strand, within AO353_28275at 6164.758 kb on - strand, within AO353_28275at 6164.758 kb on - strand, within AO353_28275at 6164.758 kb on - strand, within AO353_28275at 6164.961 kb on + strand, within AO353_28275at 6164.961 kb on + strand, within AO353_28275at 6164.962 kb on - strand, within AO353_28275at 6164.962 kb on - strand, within AO353_28275at 6164.962 kb on - strand, within AO353_28275at 6165.066 kb on + strand, within AO353_28275at 6165.066 kb on + strand, within AO353_28275at 6165.075 kb on + strand, within AO353_28275at 6165.075 kb on + strand, within AO353_28275at 6165.075 kb on + strand, within AO353_28275at 6165.076 kb on - strand, within AO353_28275at 6165.076 kb on - strand, within AO353_28275at 6165.076 kb on - strand, within AO353_28275at 6165.076 kb on - strand, within AO353_28275at 6165.076 kb on - strand, within AO353_28275at 6165.076 kb on - strand, within AO353_28275at 6165.076 kb on - strand, within AO353_28275at 6165.079 kb on - strand, within AO353_28275at 6165.079 kb on - strand, within AO353_28275at 6165.143 kb on - strand, within AO353_28275at 6165.362 kb on + strandat 6165.362 kb on + strandat 6165.362 kb on + strandat 6165.363 kb on - strandat 6165.464 kb on - strandat 6165.469 kb on + strandat 6165.616 kb on + strand, within AO353_28280at 6165.616 kb on + strand, within AO353_28280at 6165.616 kb on + strand, within AO353_28280at 6165.616 kb on + strand, within AO353_28280at 6165.616 kb on + strand, within AO353_28280at 6165.617 kb on - strandat 6165.643 kb on + strand, within AO353_28280at 6165.643 kb on + strand, within AO353_28280at 6165.644 kb on - strand, within AO353_28280at 6165.644 kb on - strand, within AO353_28280at 6165.644 kb on - strand, within AO353_28280at 6165.644 kb on - strand, within AO353_28280at 6165.644 kb on - strand, within AO353_28280at 6165.784 kb on - strand, within AO353_28280at 6165.821 kb on - strand, within AO353_28280at 6165.821 kb on - strand, within AO353_28280at 6165.823 kb on + strand, within AO353_28280at 6165.823 kb on + strand, within AO353_28280at 6165.823 kb on + strand, within AO353_28280at 6165.824 kb on - strand, within AO353_28280at 6165.824 kb on - strand, within AO353_28280at 6165.824 kb on - strand, within AO353_28280at 6165.824 kb on - strand, within AO353_28280at 6165.824 kb on - strand, within AO353_28280at 6166.014 kb on - strand, within AO353_28280at 6166.014 kb on - strand, within AO353_28280at 6166.043 kb on - strandat 6166.056 kb on - strandat 6166.056 kb on - strandat 6166.175 kb on + strandat 6166.175 kb on + strandat 6166.175 kb on + strandat 6166.176 kb on - strandat 6166.176 kb on - strandat 6166.240 kb on - strandat 6166.293 kb on + strandat 6166.307 kb on + strandat 6166.317 kb on + strandat 6166.317 kb on + strandat 6166.317 kb on + strandat 6166.317 kb on + strandat 6166.317 kb on + strandat 6166.318 kb on - strandat 6166.318 kb on - strandat 6166.318 kb on - strandat 6166.320 kb on - strandat 6166.422 kb on - strand, within AO353_28285at 6166.422 kb on - strand, within AO353_28285at 6166.428 kb on + strandat 6166.429 kb on - strand, within AO353_28285at 6166.429 kb on - strand, within AO353_28285at 6166.429 kb on - strand, within AO353_28285at 6166.429 kb on - strand, within AO353_28285at 6166.429 kb on - strand, within AO353_28285at 6166.429 kb on - strand, within AO353_28285at 6166.434 kb on + strand, within AO353_28285at 6166.444 kb on + strandat 6166.444 kb on + strand, within AO353_28285at 6166.444 kb on + strand, within AO353_28285at 6166.444 kb on + strand, within AO353_28285at 6166.444 kb on + strand, within AO353_28285at 6166.444 kb on + strand, within AO353_28285at 6166.444 kb on + strand, within AO353_28285at 6166.445 kb on - strand, within AO353_28285at 6166.445 kb on - strand, within AO353_28285at 6166.445 kb on - strand, within AO353_28285at 6166.445 kb on - strand, within AO353_28285at 6166.454 kb on - strand, within AO353_28285at 6166.454 kb on - strand, within AO353_28285at 6166.519 kb on - strandat 6166.602 kb on + strandat 6166.603 kb on - strandat 6166.603 kb on - strandat 6166.621 kb on + strandat 6166.636 kb on - strandat 6166.636 kb on - strandat 6166.725 kb on + strandat 6166.726 kb on - strandat 6166.746 kb on + strandat 6166.746 kb on + strandat 6166.746 kb on + strandat 6166.746 kb on + strandat 6166.747 kb on - strandat 6166.747 kb on - strandat 6166.747 kb on - strandat 6166.747 kb on - strandat 6166.747 kb on - strandat 6166.747 kb on - strandat 6166.747 kb on - strandat 6166.747 kb on - strandat 6166.990 kb on - strand, within AO353_28290at 6166.992 kb on + strand, within AO353_28290at 6166.993 kb on - strand, within AO353_28290at 6166.993 kb on - strand, within AO353_28290

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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6,164,502 + AO353_28275 0.33 +1.2
6,164,502 + AO353_28275 0.33 +0.6
6,164,502 + AO353_28275 0.33 -0.0
6,164,502 + AO353_28275 0.33 +0.8
6,164,503 - AO353_28275 0.33 +0.2
6,164,503 - AO353_28275 0.33 -1.2
6,164,503 - AO353_28275 0.33 +0.8
6,164,529 + AO353_28275 0.35 -2.2
6,164,529 + AO353_28275 0.35 +0.4
6,164,529 + AO353_28275 0.35 +0.3
6,164,529 + AO353_28275 0.35 -0.6
6,164,529 + AO353_28275 0.35 -0.2
6,164,529 + AO353_28275 0.35 +0.8
6,164,529 + AO353_28275 0.35 +0.4
6,164,529 + AO353_28275 0.35 +1.0
6,164,529 + AO353_28275 0.35 +1.3
6,164,530 - AO353_28275 0.35 +0.2
6,164,530 - AO353_28275 0.35 +0.8
6,164,530 - AO353_28275 0.35 -1.2
6,164,530 - AO353_28275 0.35 +0.7
6,164,530 - AO353_28275 0.35 -0.3
6,164,757 + AO353_28275 0.53 +0.5
6,164,757 + AO353_28275 0.53 +0.3
6,164,757 + AO353_28275 0.53 -0.2
6,164,757 + AO353_28275 0.53 +0.4
6,164,758 - AO353_28275 0.53 -0.2
6,164,758 - AO353_28275 0.53 +0.8
6,164,758 - AO353_28275 0.53 -0.4
6,164,961 + AO353_28275 0.69 +0.7
6,164,961 + AO353_28275 0.69 -1.4
6,164,962 - AO353_28275 0.69 -0.2
6,164,962 - AO353_28275 0.69 -0.9
6,164,962 - AO353_28275 0.69 +0.8
6,165,066 + AO353_28275 0.77 +1.2
6,165,066 + AO353_28275 0.77 +2.4
6,165,075 + AO353_28275 0.78 -0.9
6,165,075 + AO353_28275 0.78 -1.0
6,165,075 + AO353_28275 0.78 -0.2
6,165,076 - AO353_28275 0.78 -1.2
6,165,076 - AO353_28275 0.78 -0.8
6,165,076 - AO353_28275 0.78 -0.4
6,165,076 - AO353_28275 0.78 -0.7
6,165,076 - AO353_28275 0.78 +1.0
6,165,076 - AO353_28275 0.78 +0.2
6,165,076 - AO353_28275 0.78 -1.2
6,165,079 - AO353_28275 0.78 +0.3
6,165,079 - AO353_28275 0.78 -1.4
6,165,143 - AO353_28275 0.83 -0.7
6,165,362 + -0.6
6,165,362 + +1.3
6,165,362 + -0.6
6,165,363 - +0.4
6,165,464 - +0.7
6,165,469 + +0.8
6,165,616 + AO353_28280 0.30 -0.5
6,165,616 + AO353_28280 0.30 +1.4
6,165,616 + AO353_28280 0.30 +1.5
6,165,616 + AO353_28280 0.30 +0.3
6,165,616 + AO353_28280 0.30 +0.4
6,165,617 - -1.7
6,165,643 + AO353_28280 0.34 +0.8
6,165,643 + AO353_28280 0.34 +1.4
6,165,644 - AO353_28280 0.34 -0.7
6,165,644 - AO353_28280 0.34 +0.3
6,165,644 - AO353_28280 0.34 +0.2
6,165,644 - AO353_28280 0.34 -2.3
6,165,644 - AO353_28280 0.34 +0.7
6,165,784 - AO353_28280 0.55 +1.0
6,165,821 - AO353_28280 0.61 +0.8
6,165,821 - AO353_28280 0.61 +0.4
6,165,823 + AO353_28280 0.61 +1.7
6,165,823 + AO353_28280 0.61 -0.7
6,165,823 + AO353_28280 0.61 -0.2
6,165,824 - AO353_28280 0.61 +0.6
6,165,824 - AO353_28280 0.61 -0.9
6,165,824 - AO353_28280 0.61 +0.4
6,165,824 - AO353_28280 0.61 +2.7
6,165,824 - AO353_28280 0.61 -0.4
6,166,014 - AO353_28280 0.90 +1.1
6,166,014 - AO353_28280 0.90 -0.2
6,166,043 - -1.7
6,166,056 - +0.7
6,166,056 - +0.3
6,166,175 + +0.3
6,166,175 + +0.4
6,166,175 + -0.2
6,166,176 - -0.2
6,166,176 - -0.2
6,166,240 - +0.5
6,166,293 + -0.2
6,166,307 + -0.9
6,166,317 + -0.7
6,166,317 + -2.0
6,166,317 + -1.2
6,166,317 + -1.6
6,166,317 + -0.6
6,166,318 - -0.2
6,166,318 - -1.5
6,166,318 - -0.2
6,166,320 - +0.8
6,166,422 - AO353_28285 0.58 -0.6
6,166,422 - AO353_28285 0.58 +0.4
6,166,428 + +0.8
6,166,429 - AO353_28285 0.62 -0.6
6,166,429 - AO353_28285 0.62 +0.8
6,166,429 - AO353_28285 0.62 -1.2
6,166,429 - AO353_28285 0.62 +0.4
6,166,429 - AO353_28285 0.62 +0.2
6,166,429 - AO353_28285 0.62 +1.8
6,166,434 + AO353_28285 0.65 +0.8
6,166,444 + -1.7
6,166,444 + AO353_28285 0.70 -1.0
6,166,444 + AO353_28285 0.70 -1.7
6,166,444 + AO353_28285 0.70 -0.5
6,166,444 + AO353_28285 0.70 +0.7
6,166,444 + AO353_28285 0.70 -1.2
6,166,444 + AO353_28285 0.70 +0.3
6,166,445 - AO353_28285 0.70 -0.7
6,166,445 - AO353_28285 0.70 -1.7
6,166,445 - AO353_28285 0.70 -0.5
6,166,445 - AO353_28285 0.70 -0.3
6,166,454 - AO353_28285 0.75 +0.3
6,166,454 - AO353_28285 0.75 -0.9
6,166,519 - +1.4
6,166,602 + +0.3
6,166,603 - +0.2
6,166,603 - -0.6
6,166,621 + -0.7
6,166,636 - -0.7
6,166,636 - -2.7
6,166,725 + -1.7
6,166,726 - -0.6
6,166,746 + -1.3
6,166,746 + -0.5
6,166,746 + -0.2
6,166,746 + +1.8
6,166,747 - -0.5
6,166,747 - +0.7
6,166,747 - -0.4
6,166,747 - +0.2
6,166,747 - +0.4
6,166,747 - -0.7
6,166,747 - +0.8
6,166,747 - -1.0
6,166,990 - AO353_28290 0.24 +0.8
6,166,992 + AO353_28290 0.24 +0.4
6,166,993 - AO353_28290 0.24 +0.3
6,166,993 - AO353_28290 0.24 -1.2

Or see this region's nucleotide sequence