Experiment: Ionizing radiation, 126.196 Gy,
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25030 and AO353_25035 are separated by 183 nucleotides AO353_25035 and AO353_25040 overlap by 26 nucleotides AO353_25040 and AO353_25045 are separated by 282 nucleotides
AO353_25030: AO353_25030 - recombinase, at 5,519,756 to 5,520,736
_25030
AO353_25035: AO353_25035 - integrase, at 5,520,920 to 5,521,888
_25035
AO353_25040: AO353_25040 - hypothetical protein, at 5,521,863 to 5,522,327
_25040
AO353_25045: AO353_25045 - AraC family transcriptional regulator, at 5,522,610 to 5,523,713
_25045
Position (kb)
5520
5521
5522 Strain fitness (log2 ratio)
-1
0
1
2
3 at 5519.932 kb on + strand, within AO353_25030 at 5519.973 kb on + strand, within AO353_25030 at 5520.129 kb on + strand, within AO353_25030 at 5520.129 kb on + strand, within AO353_25030 at 5520.130 kb on - strand, within AO353_25030 at 5520.203 kb on - strand, within AO353_25030 at 5520.203 kb on - strand, within AO353_25030 at 5520.216 kb on + strand, within AO353_25030 at 5520.216 kb on + strand, within AO353_25030 at 5520.216 kb on + strand, within AO353_25030 at 5520.216 kb on + strand, within AO353_25030 at 5520.217 kb on - strand, within AO353_25030 at 5520.217 kb on - strand, within AO353_25030 at 5520.217 kb on - strand, within AO353_25030 at 5520.217 kb on - strand, within AO353_25030 at 5520.529 kb on + strand, within AO353_25030 at 5520.530 kb on - strand, within AO353_25030 at 5520.591 kb on + strand, within AO353_25030 at 5520.796 kb on + strand at 5520.797 kb on - strand at 5520.845 kb on + strand at 5520.936 kb on + strand at 5520.936 kb on + strand at 5520.937 kb on - strand at 5520.937 kb on - strand at 5521.338 kb on + strand, within AO353_25035 at 5521.464 kb on + strand, within AO353_25035 at 5521.472 kb on + strand, within AO353_25035 at 5521.472 kb on + strand, within AO353_25035 at 5521.655 kb on + strand, within AO353_25035 at 5521.655 kb on + strand, within AO353_25035 at 5521.656 kb on - strand, within AO353_25035 at 5521.656 kb on - strand, within AO353_25035 at 5521.656 kb on - strand, within AO353_25035 at 5521.656 kb on - strand, within AO353_25035 at 5521.656 kb on - strand, within AO353_25035 at 5521.698 kb on + strand, within AO353_25035 at 5521.698 kb on + strand, within AO353_25035 at 5521.699 kb on - strand, within AO353_25035 at 5521.699 kb on - strand, within AO353_25035 at 5521.699 kb on - strand, within AO353_25035 at 5521.699 kb on - strand, within AO353_25035 at 5521.818 kb on + strand at 5521.818 kb on + strand at 5521.818 kb on + strand at 5521.819 kb on - strand at 5521.864 kb on + strand at 5521.864 kb on + strand at 5521.864 kb on + strand at 5521.886 kb on + strand at 5522.355 kb on - strand at 5522.364 kb on - strand at 5522.382 kb on + strand at 5522.383 kb on - strand at 5522.384 kb on + strand at 5522.384 kb on + strand at 5522.419 kb on - strand at 5522.445 kb on + strand at 5522.446 kb on - strand at 5522.556 kb on - strand at 5522.556 kb on - strand at 5522.596 kb on + strand at 5522.633 kb on + strand at 5522.634 kb on - strand at 5522.671 kb on + strand at 5522.727 kb on - strand, within AO353_25045 at 5522.757 kb on + strand, within AO353_25045 at 5522.757 kb on + strand, within AO353_25045 at 5522.879 kb on + strand, within AO353_25045 at 5522.879 kb on + strand, within AO353_25045 at 5522.880 kb on - strand, within AO353_25045 at 5522.880 kb on - strand, within AO353_25045 at 5522.880 kb on - strand, within AO353_25045 at 5522.880 kb on - strand, within AO353_25045 at 5522.881 kb on + strand, within AO353_25045 at 5522.881 kb on + strand, within AO353_25045 at 5522.882 kb on - strand, within AO353_25045 at 5522.882 kb on - strand, within AO353_25045 at 5522.882 kb on - strand, within AO353_25045 at 5522.882 kb on - strand, within AO353_25045
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy, remove 5,519,932 + AO353_25030 0.18 +0.2 5,519,973 + AO353_25030 0.22 -0.3 5,520,129 + AO353_25030 0.38 -0.6 5,520,129 + AO353_25030 0.38 +0.2 5,520,130 - AO353_25030 0.38 +2.9 5,520,203 - AO353_25030 0.46 +1.3 5,520,203 - AO353_25030 0.46 +1.3 5,520,216 + AO353_25030 0.47 +0.3 5,520,216 + AO353_25030 0.47 -0.3 5,520,216 + AO353_25030 0.47 -0.3 5,520,216 + AO353_25030 0.47 +2.7 5,520,217 - AO353_25030 0.47 +1.0 5,520,217 - AO353_25030 0.47 -0.3 5,520,217 - AO353_25030 0.47 +1.1 5,520,217 - AO353_25030 0.47 +1.3 5,520,529 + AO353_25030 0.79 -1.0 5,520,530 - AO353_25030 0.79 -0.4 5,520,591 + AO353_25030 0.85 +0.5 5,520,796 + -0.3 5,520,797 - -0.7 5,520,845 + -0.3 5,520,936 + -0.4 5,520,936 + -1.0 5,520,937 - +1.7 5,520,937 - +1.7 5,521,338 + AO353_25035 0.43 -0.0 5,521,464 + AO353_25035 0.56 +2.7 5,521,472 + AO353_25035 0.57 -1.4 5,521,472 + AO353_25035 0.57 +1.7 5,521,655 + AO353_25035 0.76 +0.3 5,521,655 + AO353_25035 0.76 -0.3 5,521,656 - AO353_25035 0.76 +0.0 5,521,656 - AO353_25035 0.76 +0.2 5,521,656 - AO353_25035 0.76 -1.0 5,521,656 - AO353_25035 0.76 +0.1 5,521,656 - AO353_25035 0.76 +1.3 5,521,698 + AO353_25035 0.80 +1.6 5,521,698 + AO353_25035 0.80 -1.3 5,521,699 - AO353_25035 0.80 +0.9 5,521,699 - AO353_25035 0.80 +2.6 5,521,699 - AO353_25035 0.80 +0.7 5,521,699 - AO353_25035 0.80 +1.3 5,521,818 + -0.7 5,521,818 + -0.6 5,521,818 + +1.2 5,521,819 - -0.6 5,521,864 + -0.5 5,521,864 + +0.2 5,521,864 + -0.3 5,521,886 + +0.3 5,522,355 - +1.3 5,522,364 - -1.3 5,522,382 + -0.3 5,522,383 - +0.2 5,522,384 + -0.8 5,522,384 + +0.3 5,522,419 - -1.1 5,522,445 + +1.6 5,522,446 - +0.0 5,522,556 - -0.7 5,522,556 - +0.7 5,522,596 + +1.1 5,522,633 + +1.5 5,522,634 - +1.2 5,522,671 + +0.0 5,522,727 - AO353_25045 0.11 +1.6 5,522,757 + AO353_25045 0.13 +0.2 5,522,757 + AO353_25045 0.13 -1.3 5,522,879 + AO353_25045 0.24 -0.5 5,522,879 + AO353_25045 0.24 -0.8 5,522,880 - AO353_25045 0.24 +1.8 5,522,880 - AO353_25045 0.24 +1.1 5,522,880 - AO353_25045 0.24 -1.3 5,522,880 - AO353_25045 0.24 +1.3 5,522,881 + AO353_25045 0.25 -0.4 5,522,881 + AO353_25045 0.25 +0.7 5,522,882 - AO353_25045 0.25 +0.7 5,522,882 - AO353_25045 0.25 +0.2 5,522,882 - AO353_25045 0.25 -0.3 5,522,882 - AO353_25045 0.25 +0.6
Or see this region's nucleotide sequence