Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25035

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25030 and AO353_25035 are separated by 183 nucleotidesAO353_25035 and AO353_25040 overlap by 26 nucleotidesAO353_25040 and AO353_25045 are separated by 282 nucleotides AO353_25030: AO353_25030 - recombinase, at 5,519,756 to 5,520,736 _25030 AO353_25035: AO353_25035 - integrase, at 5,520,920 to 5,521,888 _25035 AO353_25040: AO353_25040 - hypothetical protein, at 5,521,863 to 5,522,327 _25040 AO353_25045: AO353_25045 - AraC family transcriptional regulator, at 5,522,610 to 5,523,713 _25045 Position (kb) 5520 5521 5522Strain fitness (log2 ratio) -1 0 1 2 3at 5519.932 kb on + strand, within AO353_25030at 5519.973 kb on + strand, within AO353_25030at 5520.129 kb on + strand, within AO353_25030at 5520.129 kb on + strand, within AO353_25030at 5520.130 kb on - strand, within AO353_25030at 5520.203 kb on - strand, within AO353_25030at 5520.203 kb on - strand, within AO353_25030at 5520.216 kb on + strand, within AO353_25030at 5520.216 kb on + strand, within AO353_25030at 5520.216 kb on + strand, within AO353_25030at 5520.216 kb on + strand, within AO353_25030at 5520.217 kb on - strand, within AO353_25030at 5520.217 kb on - strand, within AO353_25030at 5520.217 kb on - strand, within AO353_25030at 5520.217 kb on - strand, within AO353_25030at 5520.529 kb on + strand, within AO353_25030at 5520.530 kb on - strand, within AO353_25030at 5520.591 kb on + strand, within AO353_25030at 5520.796 kb on + strandat 5520.797 kb on - strandat 5520.845 kb on + strandat 5520.936 kb on + strandat 5520.936 kb on + strandat 5520.937 kb on - strandat 5520.937 kb on - strandat 5521.338 kb on + strand, within AO353_25035at 5521.464 kb on + strand, within AO353_25035at 5521.472 kb on + strand, within AO353_25035at 5521.472 kb on + strand, within AO353_25035at 5521.655 kb on + strand, within AO353_25035at 5521.655 kb on + strand, within AO353_25035at 5521.656 kb on - strand, within AO353_25035at 5521.656 kb on - strand, within AO353_25035at 5521.656 kb on - strand, within AO353_25035at 5521.656 kb on - strand, within AO353_25035at 5521.656 kb on - strand, within AO353_25035at 5521.698 kb on + strand, within AO353_25035at 5521.698 kb on + strand, within AO353_25035at 5521.699 kb on - strand, within AO353_25035at 5521.699 kb on - strand, within AO353_25035at 5521.699 kb on - strand, within AO353_25035at 5521.699 kb on - strand, within AO353_25035at 5521.818 kb on + strandat 5521.818 kb on + strandat 5521.818 kb on + strandat 5521.819 kb on - strandat 5521.864 kb on + strandat 5521.864 kb on + strandat 5521.864 kb on + strandat 5521.886 kb on + strandat 5522.355 kb on - strandat 5522.364 kb on - strandat 5522.382 kb on + strandat 5522.383 kb on - strandat 5522.384 kb on + strandat 5522.384 kb on + strandat 5522.419 kb on - strandat 5522.445 kb on + strandat 5522.446 kb on - strandat 5522.556 kb on - strandat 5522.556 kb on - strandat 5522.596 kb on + strandat 5522.633 kb on + strandat 5522.634 kb on - strandat 5522.671 kb on + strandat 5522.727 kb on - strand, within AO353_25045at 5522.757 kb on + strand, within AO353_25045at 5522.757 kb on + strand, within AO353_25045at 5522.879 kb on + strand, within AO353_25045at 5522.879 kb on + strand, within AO353_25045at 5522.880 kb on - strand, within AO353_25045at 5522.880 kb on - strand, within AO353_25045at 5522.880 kb on - strand, within AO353_25045at 5522.880 kb on - strand, within AO353_25045at 5522.881 kb on + strand, within AO353_25045at 5522.881 kb on + strand, within AO353_25045at 5522.882 kb on - strand, within AO353_25045at 5522.882 kb on - strand, within AO353_25045at 5522.882 kb on - strand, within AO353_25045at 5522.882 kb on - strand, within AO353_25045

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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5,519,932 + AO353_25030 0.18 +0.2
5,519,973 + AO353_25030 0.22 -0.3
5,520,129 + AO353_25030 0.38 -0.6
5,520,129 + AO353_25030 0.38 +0.2
5,520,130 - AO353_25030 0.38 +2.9
5,520,203 - AO353_25030 0.46 +1.3
5,520,203 - AO353_25030 0.46 +1.3
5,520,216 + AO353_25030 0.47 +0.3
5,520,216 + AO353_25030 0.47 -0.3
5,520,216 + AO353_25030 0.47 -0.3
5,520,216 + AO353_25030 0.47 +2.7
5,520,217 - AO353_25030 0.47 +1.0
5,520,217 - AO353_25030 0.47 -0.3
5,520,217 - AO353_25030 0.47 +1.1
5,520,217 - AO353_25030 0.47 +1.3
5,520,529 + AO353_25030 0.79 -1.0
5,520,530 - AO353_25030 0.79 -0.4
5,520,591 + AO353_25030 0.85 +0.5
5,520,796 + -0.3
5,520,797 - -0.7
5,520,845 + -0.3
5,520,936 + -0.4
5,520,936 + -1.0
5,520,937 - +1.7
5,520,937 - +1.7
5,521,338 + AO353_25035 0.43 -0.0
5,521,464 + AO353_25035 0.56 +2.7
5,521,472 + AO353_25035 0.57 -1.4
5,521,472 + AO353_25035 0.57 +1.7
5,521,655 + AO353_25035 0.76 +0.3
5,521,655 + AO353_25035 0.76 -0.3
5,521,656 - AO353_25035 0.76 +0.0
5,521,656 - AO353_25035 0.76 +0.2
5,521,656 - AO353_25035 0.76 -1.0
5,521,656 - AO353_25035 0.76 +0.1
5,521,656 - AO353_25035 0.76 +1.3
5,521,698 + AO353_25035 0.80 +1.6
5,521,698 + AO353_25035 0.80 -1.3
5,521,699 - AO353_25035 0.80 +0.9
5,521,699 - AO353_25035 0.80 +2.6
5,521,699 - AO353_25035 0.80 +0.7
5,521,699 - AO353_25035 0.80 +1.3
5,521,818 + -0.7
5,521,818 + -0.6
5,521,818 + +1.2
5,521,819 - -0.6
5,521,864 + -0.5
5,521,864 + +0.2
5,521,864 + -0.3
5,521,886 + +0.3
5,522,355 - +1.3
5,522,364 - -1.3
5,522,382 + -0.3
5,522,383 - +0.2
5,522,384 + -0.8
5,522,384 + +0.3
5,522,419 - -1.1
5,522,445 + +1.6
5,522,446 - +0.0
5,522,556 - -0.7
5,522,556 - +0.7
5,522,596 + +1.1
5,522,633 + +1.5
5,522,634 - +1.2
5,522,671 + +0.0
5,522,727 - AO353_25045 0.11 +1.6
5,522,757 + AO353_25045 0.13 +0.2
5,522,757 + AO353_25045 0.13 -1.3
5,522,879 + AO353_25045 0.24 -0.5
5,522,879 + AO353_25045 0.24 -0.8
5,522,880 - AO353_25045 0.24 +1.8
5,522,880 - AO353_25045 0.24 +1.1
5,522,880 - AO353_25045 0.24 -1.3
5,522,880 - AO353_25045 0.24 +1.3
5,522,881 + AO353_25045 0.25 -0.4
5,522,881 + AO353_25045 0.25 +0.7
5,522,882 - AO353_25045 0.25 +0.7
5,522,882 - AO353_25045 0.25 +0.2
5,522,882 - AO353_25045 0.25 -0.3
5,522,882 - AO353_25045 0.25 +0.6

Or see this region's nucleotide sequence