Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24395

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24390 and AO353_24395 are separated by 44 nucleotidesAO353_24395 and AO353_24400 are separated by 301 nucleotidesAO353_24400 and AO353_24405 are separated by 52 nucleotides AO353_24390: AO353_24390 - NADH:flavin oxidoreductase, at 5,363,425 to 5,364,567 _24390 AO353_24395: AO353_24395 - alkylhydroperoxidase, at 5,364,612 to 5,364,944 _24395 AO353_24400: AO353_24400 - ACP phosphodiesterase, at 5,365,246 to 5,365,851 _24400 AO353_24405: AO353_24405 - ArsR family transcriptional regulator, at 5,365,904 to 5,366,407 _24405 Position (kb) 5364 5365Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5363.702 kb on + strand, within AO353_24390at 5363.702 kb on + strand, within AO353_24390at 5363.703 kb on - strand, within AO353_24390at 5363.703 kb on - strand, within AO353_24390at 5363.766 kb on - strand, within AO353_24390at 5363.766 kb on - strand, within AO353_24390at 5363.766 kb on - strand, within AO353_24390at 5363.766 kb on - strand, within AO353_24390at 5363.766 kb on - strand, within AO353_24390at 5363.766 kb on - strand, within AO353_24390at 5363.785 kb on + strand, within AO353_24390at 5363.786 kb on - strand, within AO353_24390at 5363.786 kb on - strand, within AO353_24390at 5363.859 kb on - strand, within AO353_24390at 5363.859 kb on - strand, within AO353_24390at 5363.884 kb on + strand, within AO353_24390at 5363.884 kb on + strand, within AO353_24390at 5363.884 kb on + strand, within AO353_24390at 5363.885 kb on - strand, within AO353_24390at 5363.885 kb on - strand, within AO353_24390at 5363.973 kb on - strand, within AO353_24390at 5363.973 kb on - strand, within AO353_24390at 5363.973 kb on - strand, within AO353_24390at 5363.973 kb on - strand, within AO353_24390at 5364.112 kb on + strand, within AO353_24390at 5364.112 kb on + strand, within AO353_24390at 5364.112 kb on + strand, within AO353_24390at 5364.112 kb on + strand, within AO353_24390at 5364.113 kb on - strand, within AO353_24390at 5364.144 kb on + strand, within AO353_24390at 5364.144 kb on + strand, within AO353_24390at 5364.144 kb on + strand, within AO353_24390at 5364.145 kb on - strand, within AO353_24390at 5364.145 kb on - strand, within AO353_24390at 5364.145 kb on - strand, within AO353_24390at 5364.185 kb on + strand, within AO353_24390at 5364.185 kb on + strand, within AO353_24390at 5364.185 kb on + strand, within AO353_24390at 5364.185 kb on + strand, within AO353_24390at 5364.185 kb on + strand, within AO353_24390at 5364.185 kb on + strand, within AO353_24390at 5364.185 kb on + strand, within AO353_24390at 5364.185 kb on + strand, within AO353_24390at 5364.185 kb on + strand, within AO353_24390at 5364.186 kb on - strand, within AO353_24390at 5364.186 kb on - strand, within AO353_24390at 5364.186 kb on - strand, within AO353_24390at 5364.186 kb on - strand, within AO353_24390at 5364.186 kb on - strand, within AO353_24390at 5364.186 kb on - strand, within AO353_24390at 5364.195 kb on + strand, within AO353_24390at 5364.195 kb on + strand, within AO353_24390at 5364.196 kb on - strand, within AO353_24390at 5364.258 kb on + strand, within AO353_24390at 5364.259 kb on - strand, within AO353_24390at 5364.259 kb on - strand, within AO353_24390at 5364.259 kb on - strand, within AO353_24390at 5364.259 kb on - strand, within AO353_24390at 5364.307 kb on + strand, within AO353_24390at 5364.308 kb on - strand, within AO353_24390at 5364.308 kb on - strand, within AO353_24390at 5364.308 kb on - strand, within AO353_24390at 5364.353 kb on + strand, within AO353_24390at 5364.353 kb on + strand, within AO353_24390at 5364.354 kb on - strand, within AO353_24390at 5364.368 kb on + strand, within AO353_24390at 5364.368 kb on + strand, within AO353_24390at 5364.368 kb on + strand, within AO353_24390at 5364.369 kb on - strand, within AO353_24390at 5364.369 kb on - strand, within AO353_24390at 5364.369 kb on - strandat 5364.369 kb on - strand, within AO353_24390at 5364.374 kb on + strand, within AO353_24390at 5364.443 kb on + strand, within AO353_24390at 5364.446 kb on + strand, within AO353_24390at 5364.446 kb on + strand, within AO353_24390at 5364.446 kb on + strand, within AO353_24390at 5364.447 kb on - strand, within AO353_24390at 5364.447 kb on - strand, within AO353_24390at 5364.561 kb on + strandat 5364.561 kb on + strandat 5364.561 kb on + strandat 5364.561 kb on + strandat 5364.561 kb on + strandat 5364.561 kb on + strandat 5364.561 kb on + strandat 5364.561 kb on + strandat 5364.561 kb on + strandat 5364.562 kb on - strandat 5364.562 kb on - strandat 5364.562 kb on - strandat 5364.562 kb on - strandat 5364.562 kb on - strandat 5364.562 kb on - strandat 5364.562 kb on - strandat 5364.572 kb on - strandat 5364.572 kb on - strandat 5364.572 kb on - strandat 5364.613 kb on + strandat 5364.614 kb on - strandat 5364.614 kb on - strandat 5364.614 kb on - strandat 5364.647 kb on + strand, within AO353_24395at 5364.648 kb on - strand, within AO353_24395at 5364.649 kb on + strand, within AO353_24395at 5364.649 kb on + strand, within AO353_24395at 5364.649 kb on + strand, within AO353_24395at 5364.649 kb on + strand, within AO353_24395at 5364.650 kb on - strand, within AO353_24395at 5364.650 kb on - strand, within AO353_24395at 5364.650 kb on - strand, within AO353_24395at 5364.650 kb on - strand, within AO353_24395at 5364.650 kb on - strand, within AO353_24395at 5364.685 kb on - strand, within AO353_24395at 5364.713 kb on + strand, within AO353_24395at 5364.713 kb on + strandat 5364.717 kb on + strand, within AO353_24395at 5364.888 kb on - strand, within AO353_24395at 5364.897 kb on + strand, within AO353_24395at 5365.144 kb on + strandat 5365.227 kb on + strandat 5365.227 kb on + strandat 5365.227 kb on + strandat 5365.227 kb on + strandat 5365.227 kb on + strandat 5365.228 kb on - strandat 5365.228 kb on - strandat 5365.228 kb on - strandat 5365.234 kb on + strandat 5365.234 kb on + strandat 5365.234 kb on + strandat 5365.235 kb on - strandat 5365.252 kb on + strandat 5365.252 kb on + strandat 5365.253 kb on - strandat 5365.253 kb on - strandat 5365.323 kb on - strand, within AO353_24400at 5365.399 kb on - strand, within AO353_24400at 5365.399 kb on - strand, within AO353_24400at 5365.499 kb on + strand, within AO353_24400at 5365.559 kb on - strand, within AO353_24400at 5365.645 kb on + strand, within AO353_24400at 5365.697 kb on + strand, within AO353_24400at 5365.726 kb on + strand, within AO353_24400at 5365.726 kb on + strand, within AO353_24400at 5365.747 kb on + strand, within AO353_24400at 5365.748 kb on - strand, within AO353_24400at 5365.905 kb on + strandat 5365.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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5,363,702 + AO353_24390 0.24 -0.1
5,363,702 + AO353_24390 0.24 +1.8
5,363,703 - AO353_24390 0.24 -1.2
5,363,703 - AO353_24390 0.24 +0.8
5,363,766 - AO353_24390 0.30 +1.4
5,363,766 - AO353_24390 0.30 -1.2
5,363,766 - AO353_24390 0.30 +1.8
5,363,766 - AO353_24390 0.30 +0.2
5,363,766 - AO353_24390 0.30 +1.0
5,363,766 - AO353_24390 0.30 -1.5
5,363,785 + AO353_24390 0.31 +0.2
5,363,786 - AO353_24390 0.32 -0.0
5,363,786 - AO353_24390 0.32 -0.2
5,363,859 - AO353_24390 0.38 +0.8
5,363,859 - AO353_24390 0.38 +0.1
5,363,884 + AO353_24390 0.40 +1.1
5,363,884 + AO353_24390 0.40 +1.5
5,363,884 + AO353_24390 0.40 +3.1
5,363,885 - AO353_24390 0.40 +0.4
5,363,885 - AO353_24390 0.40 +1.8
5,363,973 - AO353_24390 0.48 +0.6
5,363,973 - AO353_24390 0.48 -0.6
5,363,973 - AO353_24390 0.48 +0.4
5,363,973 - AO353_24390 0.48 +3.1
5,364,112 + AO353_24390 0.60 -1.0
5,364,112 + AO353_24390 0.60 +0.4
5,364,112 + AO353_24390 0.60 +0.2
5,364,112 + AO353_24390 0.60 +1.0
5,364,113 - AO353_24390 0.60 +1.4
5,364,144 + AO353_24390 0.63 -0.8
5,364,144 + AO353_24390 0.63 +1.8
5,364,144 + AO353_24390 0.63 -1.2
5,364,145 - AO353_24390 0.63 +1.4
5,364,145 - AO353_24390 0.63 +0.1
5,364,145 - AO353_24390 0.63 +1.8
5,364,185 + AO353_24390 0.66 +0.6
5,364,185 + AO353_24390 0.66 -1.0
5,364,185 + AO353_24390 0.66 +1.1
5,364,185 + AO353_24390 0.66 +0.2
5,364,185 + AO353_24390 0.66 +0.6
5,364,185 + AO353_24390 0.66 +0.5
5,364,185 + AO353_24390 0.66 +0.9
5,364,185 + AO353_24390 0.66 +0.1
5,364,185 + AO353_24390 0.66 -0.8
5,364,186 - AO353_24390 0.67 +2.4
5,364,186 - AO353_24390 0.67 -2.2
5,364,186 - AO353_24390 0.67 +0.8
5,364,186 - AO353_24390 0.67 +0.2
5,364,186 - AO353_24390 0.67 -0.8
5,364,186 - AO353_24390 0.67 +1.3
5,364,195 + AO353_24390 0.67 +0.3
5,364,195 + AO353_24390 0.67 +0.8
5,364,196 - AO353_24390 0.67 -0.8
5,364,258 + AO353_24390 0.73 +1.2
5,364,259 - AO353_24390 0.73 +0.2
5,364,259 - AO353_24390 0.73 +1.1
5,364,259 - AO353_24390 0.73 -0.8
5,364,259 - AO353_24390 0.73 +0.8
5,364,307 + AO353_24390 0.77 -0.6
5,364,308 - AO353_24390 0.77 +0.5
5,364,308 - AO353_24390 0.77 +0.5
5,364,308 - AO353_24390 0.77 -1.2
5,364,353 + AO353_24390 0.81 -0.8
5,364,353 + AO353_24390 0.81 +0.4
5,364,354 - AO353_24390 0.81 +1.6
5,364,368 + AO353_24390 0.83 +0.4
5,364,368 + AO353_24390 0.83 -0.2
5,364,368 + AO353_24390 0.83 -0.6
5,364,369 - AO353_24390 0.83 -0.2
5,364,369 - AO353_24390 0.83 -0.6
5,364,369 - -2.6
5,364,369 - AO353_24390 0.83 -0.3
5,364,374 + AO353_24390 0.83 +0.4
5,364,443 + AO353_24390 0.89 +0.5
5,364,446 + AO353_24390 0.89 +0.0
5,364,446 + AO353_24390 0.89 -1.0
5,364,446 + AO353_24390 0.89 -0.1
5,364,447 - AO353_24390 0.89 +0.8
5,364,447 - AO353_24390 0.89 -1.6
5,364,561 + -1.2
5,364,561 + -1.8
5,364,561 + -1.2
5,364,561 + +0.1
5,364,561 + -0.6
5,364,561 + -2.2
5,364,561 + -0.2
5,364,561 + +1.1
5,364,561 + -1.2
5,364,562 - +0.1
5,364,562 - +0.4
5,364,562 - +1.4
5,364,562 - +0.8
5,364,562 - +0.4
5,364,562 - -1.2
5,364,562 - -0.1
5,364,572 - -1.2
5,364,572 - -0.5
5,364,572 - +1.2
5,364,613 + +0.0
5,364,614 - -0.2
5,364,614 - -0.2
5,364,614 - +1.4
5,364,647 + AO353_24395 0.11 -1.5
5,364,648 - AO353_24395 0.11 -0.2
5,364,649 + AO353_24395 0.11 +0.4
5,364,649 + AO353_24395 0.11 +0.5
5,364,649 + AO353_24395 0.11 -0.6
5,364,649 + AO353_24395 0.11 +1.0
5,364,650 - AO353_24395 0.11 -1.1
5,364,650 - AO353_24395 0.11 -0.0
5,364,650 - AO353_24395 0.11 +0.0
5,364,650 - AO353_24395 0.11 +0.0
5,364,650 - AO353_24395 0.11 -1.4
5,364,685 - AO353_24395 0.22 -0.5
5,364,713 + AO353_24395 0.30 +0.8
5,364,713 + +0.8
5,364,717 + AO353_24395 0.32 -2.6
5,364,888 - AO353_24395 0.83 -0.9
5,364,897 + AO353_24395 0.86 -0.6
5,365,144 + +1.4
5,365,227 + -2.6
5,365,227 + -0.6
5,365,227 + -0.6
5,365,227 + +2.4
5,365,227 + -0.7
5,365,228 - +0.8
5,365,228 - -0.2
5,365,228 - -0.2
5,365,234 + -0.2
5,365,234 + +1.5
5,365,234 + +0.2
5,365,235 - -0.8
5,365,252 + -0.6
5,365,252 + +0.8
5,365,253 - -1.8
5,365,253 - -0.1
5,365,323 - AO353_24400 0.13 +0.1
5,365,399 - AO353_24400 0.25 +0.4
5,365,399 - AO353_24400 0.25 -0.8
5,365,499 + AO353_24400 0.42 +1.8
5,365,559 - AO353_24400 0.52 -1.2
5,365,645 + AO353_24400 0.66 +0.5
5,365,697 + AO353_24400 0.74 +0.8
5,365,726 + AO353_24400 0.79 +1.1
5,365,726 + AO353_24400 0.79 +0.5
5,365,747 + AO353_24400 0.83 +0.1
5,365,748 - AO353_24400 0.83 -0.2
5,365,905 + -0.2
5,365,929 - +0.4

Or see this region's nucleotide sequence