Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24080

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24075 and AO353_24080 are separated by 219 nucleotidesAO353_24080 and AO353_24085 overlap by 4 nucleotides AO353_24075: AO353_24075 - RND transporter, at 5,296,608 to 5,298,068 _24075 AO353_24080: AO353_24080 - hypothetical protein, at 5,298,288 to 5,299,397 _24080 AO353_24085: AO353_24085 - multidrug transporter, at 5,299,394 to 5,302,531 _24085 Position (kb) 5298 5299 5300Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5297.392 kb on + strand, within AO353_24075at 5297.392 kb on + strand, within AO353_24075at 5297.392 kb on + strand, within AO353_24075at 5297.392 kb on + strand, within AO353_24075at 5297.416 kb on + strand, within AO353_24075at 5297.417 kb on - strand, within AO353_24075at 5297.436 kb on + strand, within AO353_24075at 5297.457 kb on - strand, within AO353_24075at 5297.457 kb on - strand, within AO353_24075at 5297.509 kb on + strand, within AO353_24075at 5297.509 kb on + strand, within AO353_24075at 5297.509 kb on + strand, within AO353_24075at 5297.509 kb on + strand, within AO353_24075at 5297.509 kb on + strand, within AO353_24075at 5297.509 kb on + strand, within AO353_24075at 5297.510 kb on - strand, within AO353_24075at 5297.510 kb on - strand, within AO353_24075at 5297.510 kb on - strand, within AO353_24075at 5297.510 kb on - strand, within AO353_24075at 5297.510 kb on - strand, within AO353_24075at 5297.625 kb on + strand, within AO353_24075at 5297.625 kb on + strand, within AO353_24075at 5297.625 kb on + strand, within AO353_24075at 5297.625 kb on + strand, within AO353_24075at 5297.625 kb on + strand, within AO353_24075at 5297.626 kb on - strand, within AO353_24075at 5297.626 kb on - strand, within AO353_24075at 5297.657 kb on - strand, within AO353_24075at 5297.729 kb on - strand, within AO353_24075at 5297.729 kb on - strand, within AO353_24075at 5297.769 kb on + strand, within AO353_24075at 5297.769 kb on + strand, within AO353_24075at 5297.769 kb on + strand, within AO353_24075at 5297.770 kb on - strand, within AO353_24075at 5297.770 kb on - strand, within AO353_24075at 5297.962 kb on + strandat 5297.963 kb on - strandat 5297.963 kb on - strandat 5298.074 kb on + strandat 5298.145 kb on + strandat 5298.145 kb on + strandat 5298.145 kb on + strandat 5298.146 kb on - strandat 5298.146 kb on - strandat 5298.146 kb on - strandat 5298.166 kb on - strandat 5298.166 kb on - strandat 5298.166 kb on - strandat 5298.187 kb on + strandat 5298.188 kb on - strandat 5298.188 kb on - strandat 5298.188 kb on - strandat 5298.188 kb on - strandat 5298.273 kb on + strandat 5298.277 kb on + strandat 5298.277 kb on + strandat 5298.277 kb on + strandat 5298.278 kb on - strandat 5298.278 kb on - strandat 5298.287 kb on + strandat 5298.288 kb on - strandat 5298.288 kb on - strandat 5298.455 kb on - strand, within AO353_24080at 5298.455 kb on - strand, within AO353_24080at 5298.455 kb on - strand, within AO353_24080at 5298.702 kb on + strand, within AO353_24080at 5298.702 kb on + strand, within AO353_24080at 5298.823 kb on + strand, within AO353_24080at 5298.972 kb on + strand, within AO353_24080at 5298.980 kb on + strand, within AO353_24080at 5298.981 kb on - strand, within AO353_24080at 5298.995 kb on + strand, within AO353_24080at 5298.996 kb on - strand, within AO353_24080at 5298.996 kb on - strand, within AO353_24080at 5299.035 kb on - strand, within AO353_24080at 5299.060 kb on - strand, within AO353_24080at 5299.094 kb on - strand, within AO353_24080at 5299.153 kb on + strand, within AO353_24080at 5299.154 kb on - strand, within AO353_24080at 5299.154 kb on - strand, within AO353_24080at 5299.309 kb on + strandat 5299.309 kb on + strandat 5299.310 kb on - strandat 5299.310 kb on - strandat 5299.310 kb on - strandat 5299.310 kb on - strandat 5299.310 kb on - strandat 5299.310 kb on - strandat 5299.310 kb on - strandat 5299.597 kb on - strandat 5299.655 kb on + strandat 5299.655 kb on + strandat 5299.656 kb on - strandat 5299.656 kb on - strandat 5299.656 kb on - strandat 5299.733 kb on + strand, within AO353_24085at 5299.733 kb on + strand, within AO353_24085at 5299.733 kb on + strand, within AO353_24085at 5299.733 kb on + strand, within AO353_24085at 5299.734 kb on - strand, within AO353_24085at 5299.744 kb on + strand, within AO353_24085at 5299.875 kb on + strand, within AO353_24085at 5299.875 kb on + strand, within AO353_24085at 5299.939 kb on + strand, within AO353_24085at 5299.939 kb on + strand, within AO353_24085at 5299.939 kb on + strand, within AO353_24085at 5299.940 kb on - strand, within AO353_24085at 5299.940 kb on - strand, within AO353_24085at 5300.202 kb on - strand, within AO353_24085at 5300.230 kb on + strand, within AO353_24085at 5300.230 kb on + strand, within AO353_24085at 5300.231 kb on - strand, within AO353_24085at 5300.382 kb on + strand, within AO353_24085at 5300.382 kb on + strand, within AO353_24085at 5300.382 kb on + strand, within AO353_24085at 5300.383 kb on - strand, within AO353_24085at 5300.383 kb on - strand, within AO353_24085at 5300.387 kb on - strand, within AO353_24085at 5300.387 kb on - strand, within AO353_24085at 5300.387 kb on - strand, within AO353_24085at 5300.387 kb on - strand, within AO353_24085at 5300.387 kb on - strand, within AO353_24085

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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5,297,392 + AO353_24075 0.54 +1.0
5,297,392 + AO353_24075 0.54 +0.4
5,297,392 + AO353_24075 0.54 -2.2
5,297,392 + AO353_24075 0.54 +0.0
5,297,416 + AO353_24075 0.55 -0.2
5,297,417 - AO353_24075 0.55 +1.9
5,297,436 + AO353_24075 0.57 +2.1
5,297,457 - AO353_24075 0.58 +1.9
5,297,457 - AO353_24075 0.58 +1.4
5,297,509 + AO353_24075 0.62 +0.4
5,297,509 + AO353_24075 0.62 -0.9
5,297,509 + AO353_24075 0.62 +1.8
5,297,509 + AO353_24075 0.62 -1.8
5,297,509 + AO353_24075 0.62 -0.2
5,297,509 + AO353_24075 0.62 +0.2
5,297,510 - AO353_24075 0.62 -2.2
5,297,510 - AO353_24075 0.62 +0.3
5,297,510 - AO353_24075 0.62 -1.8
5,297,510 - AO353_24075 0.62 +0.9
5,297,510 - AO353_24075 0.62 -0.7
5,297,625 + AO353_24075 0.70 +0.6
5,297,625 + AO353_24075 0.70 -2.8
5,297,625 + AO353_24075 0.70 +1.6
5,297,625 + AO353_24075 0.70 +0.2
5,297,625 + AO353_24075 0.70 +1.4
5,297,626 - AO353_24075 0.70 -1.2
5,297,626 - AO353_24075 0.70 +1.4
5,297,657 - AO353_24075 0.72 +0.8
5,297,729 - AO353_24075 0.77 -0.5
5,297,729 - AO353_24075 0.77 -0.5
5,297,769 + AO353_24075 0.79 -0.0
5,297,769 + AO353_24075 0.79 +1.2
5,297,769 + AO353_24075 0.79 -0.2
5,297,770 - AO353_24075 0.80 +0.2
5,297,770 - AO353_24075 0.80 +1.2
5,297,962 + +0.0
5,297,963 - +0.1
5,297,963 - +0.7
5,298,074 + -0.2
5,298,145 + +0.2
5,298,145 + +1.4
5,298,145 + +0.8
5,298,146 - -0.6
5,298,146 - +1.4
5,298,146 - -0.0
5,298,166 - +2.4
5,298,166 - +0.6
5,298,166 - -0.5
5,298,187 + +0.9
5,298,188 - +1.2
5,298,188 - -1.2
5,298,188 - -0.2
5,298,188 - +0.5
5,298,273 + -1.2
5,298,277 + +0.2
5,298,277 + -0.2
5,298,277 + +0.5
5,298,278 - -1.0
5,298,278 - -0.3
5,298,287 + -1.2
5,298,288 - +0.5
5,298,288 - -2.0
5,298,455 - AO353_24080 0.15 -1.4
5,298,455 - AO353_24080 0.15 +0.8
5,298,455 - AO353_24080 0.15 +0.4
5,298,702 + AO353_24080 0.37 -1.8
5,298,702 + AO353_24080 0.37 +1.2
5,298,823 + AO353_24080 0.48 -1.8
5,298,972 + AO353_24080 0.62 -2.2
5,298,980 + AO353_24080 0.62 -0.5
5,298,981 - AO353_24080 0.62 +1.8
5,298,995 + AO353_24080 0.64 -0.1
5,298,996 - AO353_24080 0.64 -0.2
5,298,996 - AO353_24080 0.64 +0.8
5,299,035 - AO353_24080 0.67 +1.6
5,299,060 - AO353_24080 0.70 +1.1
5,299,094 - AO353_24080 0.73 +0.1
5,299,153 + AO353_24080 0.78 +1.1
5,299,154 - AO353_24080 0.78 +0.5
5,299,154 - AO353_24080 0.78 +0.8
5,299,309 + -0.7
5,299,309 + +0.8
5,299,310 - -1.2
5,299,310 - -1.9
5,299,310 - +0.6
5,299,310 - -1.8
5,299,310 - -0.2
5,299,310 - +0.8
5,299,310 - -0.6
5,299,597 - +0.1
5,299,655 + +0.2
5,299,655 + -0.4
5,299,656 - -0.8
5,299,656 - +0.9
5,299,656 - -0.9
5,299,733 + AO353_24085 0.11 +0.2
5,299,733 + AO353_24085 0.11 -0.2
5,299,733 + AO353_24085 0.11 -0.2
5,299,733 + AO353_24085 0.11 -2.2
5,299,734 - AO353_24085 0.11 -0.2
5,299,744 + AO353_24085 0.11 -0.2
5,299,875 + AO353_24085 0.15 +0.2
5,299,875 + AO353_24085 0.15 +1.6
5,299,939 + AO353_24085 0.17 +1.0
5,299,939 + AO353_24085 0.17 -2.2
5,299,939 + AO353_24085 0.17 +1.0
5,299,940 - AO353_24085 0.17 -1.0
5,299,940 - AO353_24085 0.17 +0.2
5,300,202 - AO353_24085 0.26 +1.0
5,300,230 + AO353_24085 0.27 +1.6
5,300,230 + AO353_24085 0.27 +0.4
5,300,231 - AO353_24085 0.27 +0.6
5,300,382 + AO353_24085 0.31 -1.2
5,300,382 + AO353_24085 0.31 +0.2
5,300,382 + AO353_24085 0.31 -0.7
5,300,383 - AO353_24085 0.32 -1.0
5,300,383 - AO353_24085 0.32 +1.0
5,300,387 - AO353_24085 0.32 -2.1
5,300,387 - AO353_24085 0.32 +0.8
5,300,387 - AO353_24085 0.32 -0.6
5,300,387 - AO353_24085 0.32 -0.7
5,300,387 - AO353_24085 0.32 -0.2

Or see this region's nucleotide sequence