Experiment: Ionizing radiation, 126.196 Gy,
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23870 and AO353_23875 are separated by 51 nucleotides AO353_23875 and AO353_23880 are separated by 124 nucleotides AO353_23880 and AO353_23885 are separated by 10 nucleotides
AO353_23870: AO353_23870 - DNA-binding protein, at 5,238,703 to 5,239,419
_23870
AO353_23875: AO353_23875 - ketosteroid isomerase, at 5,239,471 to 5,239,812
_23875
AO353_23880: AO353_23880 - ATPase, at 5,239,937 to 5,241,055
_23880
AO353_23885: AO353_23885 - AraC family transcriptional regulator, at 5,241,066 to 5,241,971
_23885
Position (kb)
5239
5240
5241
5242 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5238.958 kb on + strand, within AO353_23870 at 5238.958 kb on + strand, within AO353_23870 at 5239.124 kb on + strand, within AO353_23870 at 5239.124 kb on + strand, within AO353_23870 at 5239.125 kb on - strand, within AO353_23870 at 5239.433 kb on + strand at 5239.433 kb on + strand at 5239.433 kb on + strand at 5239.433 kb on + strand at 5239.434 kb on - strand at 5239.434 kb on - strand at 5239.434 kb on - strand at 5239.468 kb on - strand at 5239.513 kb on + strand, within AO353_23875 at 5239.513 kb on + strand, within AO353_23875 at 5239.513 kb on + strand, within AO353_23875 at 5239.514 kb on - strand, within AO353_23875 at 5239.514 kb on - strand, within AO353_23875 at 5239.514 kb on - strand, within AO353_23875 at 5239.514 kb on - strand, within AO353_23875 at 5239.515 kb on + strand, within AO353_23875 at 5239.515 kb on + strand, within AO353_23875 at 5239.515 kb on + strand, within AO353_23875 at 5239.515 kb on + strand, within AO353_23875 at 5239.700 kb on + strand, within AO353_23875 at 5239.700 kb on + strand, within AO353_23875 at 5239.701 kb on - strand, within AO353_23875 at 5239.701 kb on - strand, within AO353_23875 at 5239.757 kb on - strand, within AO353_23875 at 5239.903 kb on + strand at 5239.903 kb on + strand at 5239.904 kb on - strand at 5239.904 kb on - strand at 5239.904 kb on - strand at 5239.965 kb on - strand at 5240.085 kb on - strand, within AO353_23880 at 5240.628 kb on - strand at 5240.665 kb on - strand, within AO353_23880 at 5240.862 kb on + strand, within AO353_23880 at 5240.862 kb on + strand, within AO353_23880 at 5240.915 kb on + strand, within AO353_23880 at 5240.916 kb on - strand, within AO353_23880 at 5240.936 kb on + strand, within AO353_23880 at 5240.969 kb on + strand at 5240.969 kb on + strand at 5240.969 kb on + strand at 5240.970 kb on - strand at 5240.970 kb on - strand at 5240.970 kb on - strand at 5240.970 kb on - strand at 5240.970 kb on - strand at 5240.970 kb on - strand at 5240.970 kb on - strand at 5240.981 kb on + strand at 5241.033 kb on + strand at 5241.034 kb on - strand at 5241.034 kb on - strand at 5241.034 kb on - strand at 5241.063 kb on - strand at 5241.167 kb on + strand, within AO353_23885 at 5241.167 kb on + strand, within AO353_23885 at 5241.167 kb on + strand, within AO353_23885 at 5241.167 kb on + strand at 5241.167 kb on + strand, within AO353_23885 at 5241.168 kb on - strand, within AO353_23885 at 5241.168 kb on - strand, within AO353_23885 at 5241.210 kb on - strand, within AO353_23885 at 5241.310 kb on + strand, within AO353_23885 at 5241.311 kb on - strand, within AO353_23885 at 5241.311 kb on - strand, within AO353_23885 at 5241.311 kb on - strand, within AO353_23885 at 5241.311 kb on - strand, within AO353_23885 at 5241.382 kb on + strand, within AO353_23885 at 5241.382 kb on + strand, within AO353_23885 at 5241.382 kb on + strand, within AO353_23885 at 5241.383 kb on - strand, within AO353_23885 at 5241.576 kb on - strand, within AO353_23885 at 5241.576 kb on - strand, within AO353_23885 at 5241.595 kb on + strand, within AO353_23885 at 5241.793 kb on + strand, within AO353_23885 at 5241.794 kb on - strand at 5241.794 kb on - strand, within AO353_23885 at 5241.937 kb on + strand at 5241.938 kb on - strand at 5241.989 kb on + strand at 5241.990 kb on - strand at 5241.990 kb on - strand at 5241.990 kb on - strand at 5242.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy, remove 5,238,958 + AO353_23870 0.36 -0.0 5,238,958 + AO353_23870 0.36 -0.5 5,239,124 + AO353_23870 0.59 -0.2 5,239,124 + AO353_23870 0.59 +1.0 5,239,125 - AO353_23870 0.59 -0.2 5,239,433 + +0.7 5,239,433 + +2.4 5,239,433 + -1.2 5,239,433 + +0.0 5,239,434 - +1.4 5,239,434 - -0.2 5,239,434 - -0.5 5,239,468 - -0.6 5,239,513 + AO353_23875 0.12 -1.5 5,239,513 + AO353_23875 0.12 -1.0 5,239,513 + AO353_23875 0.12 +0.8 5,239,514 - AO353_23875 0.13 +0.1 5,239,514 - AO353_23875 0.13 +1.6 5,239,514 - AO353_23875 0.13 -0.6 5,239,514 - AO353_23875 0.13 -1.1 5,239,515 + AO353_23875 0.13 +1.6 5,239,515 + AO353_23875 0.13 +0.2 5,239,515 + AO353_23875 0.13 -0.1 5,239,515 + AO353_23875 0.13 +2.4 5,239,700 + AO353_23875 0.67 -2.0 5,239,700 + AO353_23875 0.67 +0.8 5,239,701 - AO353_23875 0.67 -0.6 5,239,701 - AO353_23875 0.67 +0.8 5,239,757 - AO353_23875 0.84 +1.4 5,239,903 + +0.9 5,239,903 + -1.2 5,239,904 - -0.1 5,239,904 - -1.8 5,239,904 - -0.2 5,239,965 - +1.0 5,240,085 - AO353_23880 0.13 -1.8 5,240,628 - +0.8 5,240,665 - AO353_23880 0.65 +1.4 5,240,862 + AO353_23880 0.83 +0.4 5,240,862 + AO353_23880 0.83 -1.5 5,240,915 + AO353_23880 0.87 -0.4 5,240,916 - AO353_23880 0.87 +0.1 5,240,936 + AO353_23880 0.89 +1.0 5,240,969 + +1.8 5,240,969 + +0.4 5,240,969 + -0.2 5,240,970 - +1.4 5,240,970 - -0.8 5,240,970 - -1.0 5,240,970 - -0.2 5,240,970 - +0.8 5,240,970 - -0.7 5,240,970 - -0.2 5,240,981 + +0.1 5,241,033 + -0.2 5,241,034 - -0.2 5,241,034 - +1.1 5,241,034 - -2.2 5,241,063 - +1.1 5,241,167 + AO353_23885 0.11 +0.5 5,241,167 + AO353_23885 0.11 -2.2 5,241,167 + AO353_23885 0.11 +0.8 5,241,167 + +1.4 5,241,167 + AO353_23885 0.11 -1.2 5,241,168 - AO353_23885 0.11 -2.2 5,241,168 - AO353_23885 0.11 +0.1 5,241,210 - AO353_23885 0.16 +0.3 5,241,310 + AO353_23885 0.27 -1.7 5,241,311 - AO353_23885 0.27 -1.8 5,241,311 - AO353_23885 0.27 -0.5 5,241,311 - AO353_23885 0.27 +0.4 5,241,311 - AO353_23885 0.27 +0.8 5,241,382 + AO353_23885 0.35 +1.7 5,241,382 + AO353_23885 0.35 +0.8 5,241,382 + AO353_23885 0.35 +0.4 5,241,383 - AO353_23885 0.35 +2.1 5,241,576 - AO353_23885 0.56 +0.6 5,241,576 - AO353_23885 0.56 -1.0 5,241,595 + AO353_23885 0.58 +0.4 5,241,793 + AO353_23885 0.80 +1.0 5,241,794 - +0.8 5,241,794 - AO353_23885 0.80 -0.4 5,241,937 + +1.8 5,241,938 - -1.5 5,241,989 + +0.0 5,241,990 - -2.0 5,241,990 - -1.5 5,241,990 - +0.0 5,242,040 - -0.5
Or see this region's nucleotide sequence