Experiment: Ionizing radiation, 126.196 Gy,
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23675 and AO353_23680 overlap by 4 nucleotides AO353_23680 and AO353_23685 are separated by 200 nucleotides
AO353_23675: AO353_23675 - chromosome segregation protein SMC, at 5,182,341 to 5,185,982
_23675
AO353_23680: AO353_23680 - exonuclease SbcD, at 5,185,979 to 5,187,223
_23680
AO353_23685: AO353_23685 - hypothetical protein, at 5,187,424 to 5,188,554
_23685
Position (kb) 5185
5186
5187
5188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5185.393 kb on + strand, within AO353_23675 at 5185.393 kb on + strand, within AO353_23675 at 5185.393 kb on + strand, within AO353_23675 at 5185.394 kb on - strand, within AO353_23675 at 5185.543 kb on + strand, within AO353_23675 at 5185.543 kb on + strand, within AO353_23675 at 5185.543 kb on + strand, within AO353_23675 at 5185.543 kb on + strand, within AO353_23675 at 5185.773 kb on + strand at 5186.061 kb on + strand at 5186.061 kb on + strand at 5186.062 kb on - strand at 5186.087 kb on + strand at 5186.088 kb on - strand at 5186.167 kb on - strand, within AO353_23680 at 5186.301 kb on - strand, within AO353_23680 at 5186.301 kb on - strand, within AO353_23680 at 5186.556 kb on + strand, within AO353_23680 at 5186.556 kb on + strand, within AO353_23680 at 5186.556 kb on + strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.751 kb on + strand, within AO353_23680 at 5186.751 kb on + strand, within AO353_23680 at 5186.751 kb on + strand, within AO353_23680 at 5186.752 kb on - strand, within AO353_23680 at 5186.752 kb on - strand, within AO353_23680 at 5187.034 kb on - strand, within AO353_23680 at 5187.242 kb on + strand at 5187.243 kb on - strand at 5187.243 kb on - strand at 5187.243 kb on - strand at 5187.343 kb on + strand at 5187.343 kb on + strand at 5187.360 kb on + strand at 5187.361 kb on - strand at 5187.361 kb on - strand at 5187.692 kb on + strand, within AO353_23685 at 5187.692 kb on + strand, within AO353_23685 at 5188.171 kb on + strand, within AO353_23685 at 5188.171 kb on + strand, within AO353_23685 at 5188.172 kb on - strand, within AO353_23685 at 5188.218 kb on + strand, within AO353_23685
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy, remove 5,185,393 + AO353_23675 0.84 -1.3 5,185,393 + AO353_23675 0.84 +0.8 5,185,393 + AO353_23675 0.84 +0.2 5,185,394 - AO353_23675 0.84 +0.4 5,185,543 + AO353_23675 0.88 -2.5 5,185,543 + AO353_23675 0.88 -0.8 5,185,543 + AO353_23675 0.88 +0.4 5,185,543 + AO353_23675 0.88 +0.1 5,185,773 + -0.2 5,186,061 + +1.8 5,186,061 + -0.8 5,186,062 - -0.8 5,186,087 + -1.2 5,186,088 - +0.0 5,186,167 - AO353_23680 0.15 +1.0 5,186,301 - AO353_23680 0.26 +0.4 5,186,301 - AO353_23680 0.26 +1.6 5,186,556 + AO353_23680 0.46 -0.8 5,186,556 + AO353_23680 0.46 +1.0 5,186,556 + AO353_23680 0.46 -2.2 5,186,557 - AO353_23680 0.46 +0.5 5,186,557 - AO353_23680 0.46 -0.8 5,186,557 - AO353_23680 0.46 +0.5 5,186,557 - AO353_23680 0.46 -0.2 5,186,557 - AO353_23680 0.46 +0.2 5,186,557 - AO353_23680 0.46 +0.2 5,186,557 - AO353_23680 0.46 -0.4 5,186,751 + AO353_23680 0.62 +0.6 5,186,751 + AO353_23680 0.62 -0.6 5,186,751 + AO353_23680 0.62 +1.8 5,186,752 - AO353_23680 0.62 -0.8 5,186,752 - AO353_23680 0.62 -1.4 5,187,034 - AO353_23680 0.85 +0.4 5,187,242 + +0.4 5,187,243 - -0.2 5,187,243 - -1.0 5,187,243 - -0.5 5,187,343 + -1.5 5,187,343 + +2.6 5,187,360 + -1.3 5,187,361 - -1.2 5,187,361 - -0.2 5,187,692 + AO353_23685 0.24 +1.1 5,187,692 + AO353_23685 0.24 -1.4 5,188,171 + AO353_23685 0.66 +0.8 5,188,171 + AO353_23685 0.66 -1.2 5,188,172 - AO353_23685 0.66 -0.2 5,188,218 + AO353_23685 0.70 -0.2
Or see this region's nucleotide sequence