Experiment: Ionizing radiation, 126.196 Gy,
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23660 and AO353_23665 overlap by 4 nucleotides AO353_23665 and AO353_23670 are separated by 4 nucleotides AO353_23670 and AO353_23675 overlap by 4 nucleotides AO353_23675 and AO353_23680 overlap by 4 nucleotides
AO353_23660: AO353_23660 - hypothetical protein, at 5,181,265 to 5,181,474
_23660
AO353_23665: AO353_23665 - hypothetical protein, at 5,181,471 to 5,181,728
_23665
AO353_23670: AO353_23670 - glutathione S-transferase, at 5,181,733 to 5,182,344
_23670
AO353_23675: AO353_23675 - chromosome segregation protein SMC, at 5,182,341 to 5,185,982
_23675
AO353_23680: AO353_23680 - exonuclease SbcD, at 5,185,979 to 5,187,223
_23680
Position (kb)
5182
5183
5184
5185
5186 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5181.642 kb on - strand, within AO353_23665 at 5181.726 kb on + strand at 5181.727 kb on - strand at 5181.859 kb on + strand, within AO353_23670 at 5181.860 kb on - strand, within AO353_23670 at 5181.860 kb on - strand, within AO353_23670 at 5181.911 kb on + strand, within AO353_23670 at 5181.912 kb on - strand, within AO353_23670 at 5181.912 kb on - strand, within AO353_23670 at 5182.007 kb on + strand, within AO353_23670 at 5182.007 kb on + strand, within AO353_23670 at 5182.008 kb on - strand, within AO353_23670 at 5182.008 kb on - strand, within AO353_23670 at 5182.422 kb on + strand at 5182.422 kb on + strand at 5182.422 kb on + strand at 5182.422 kb on + strand at 5182.423 kb on - strand at 5182.423 kb on - strand at 5182.423 kb on - strand at 5182.765 kb on + strand, within AO353_23675 at 5182.765 kb on + strand, within AO353_23675 at 5182.766 kb on - strand, within AO353_23675 at 5182.766 kb on - strand, within AO353_23675 at 5182.849 kb on + strand, within AO353_23675 at 5182.849 kb on + strand, within AO353_23675 at 5182.849 kb on + strand, within AO353_23675 at 5182.850 kb on - strand, within AO353_23675 at 5182.850 kb on - strand, within AO353_23675 at 5182.850 kb on - strand, within AO353_23675 at 5182.923 kb on + strand, within AO353_23675 at 5182.924 kb on - strand, within AO353_23675 at 5182.924 kb on - strand, within AO353_23675 at 5182.924 kb on - strand, within AO353_23675 at 5182.924 kb on - strand, within AO353_23675 at 5183.059 kb on - strand, within AO353_23675 at 5183.059 kb on - strand, within AO353_23675 at 5183.097 kb on + strand, within AO353_23675 at 5183.098 kb on - strand, within AO353_23675 at 5183.098 kb on - strand at 5183.098 kb on - strand, within AO353_23675 at 5183.142 kb on + strand, within AO353_23675 at 5183.143 kb on - strand, within AO353_23675 at 5184.512 kb on - strand, within AO353_23675 at 5184.650 kb on - strand, within AO353_23675 at 5184.948 kb on + strand, within AO353_23675 at 5184.948 kb on + strand, within AO353_23675 at 5184.948 kb on + strand, within AO353_23675 at 5184.948 kb on + strand, within AO353_23675 at 5185.393 kb on + strand, within AO353_23675 at 5185.393 kb on + strand, within AO353_23675 at 5185.393 kb on + strand, within AO353_23675 at 5185.394 kb on - strand, within AO353_23675 at 5185.543 kb on + strand, within AO353_23675 at 5185.543 kb on + strand, within AO353_23675 at 5185.543 kb on + strand, within AO353_23675 at 5185.543 kb on + strand, within AO353_23675 at 5185.773 kb on + strand at 5186.061 kb on + strand at 5186.061 kb on + strand at 5186.062 kb on - strand at 5186.087 kb on + strand at 5186.088 kb on - strand at 5186.167 kb on - strand, within AO353_23680 at 5186.301 kb on - strand, within AO353_23680 at 5186.301 kb on - strand, within AO353_23680 at 5186.556 kb on + strand, within AO353_23680 at 5186.556 kb on + strand, within AO353_23680 at 5186.556 kb on + strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.557 kb on - strand, within AO353_23680 at 5186.751 kb on + strand, within AO353_23680 at 5186.751 kb on + strand, within AO353_23680 at 5186.751 kb on + strand, within AO353_23680 at 5186.752 kb on - strand, within AO353_23680 at 5186.752 kb on - strand, within AO353_23680
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy, remove 5,181,642 - AO353_23665 0.66 +0.4 5,181,726 + -0.6 5,181,727 - +1.1 5,181,859 + AO353_23670 0.21 -1.2 5,181,860 - AO353_23670 0.21 +0.3 5,181,860 - AO353_23670 0.21 +1.4 5,181,911 + AO353_23670 0.29 +0.0 5,181,912 - AO353_23670 0.29 +2.2 5,181,912 - AO353_23670 0.29 -1.0 5,182,007 + AO353_23670 0.45 -0.5 5,182,007 + AO353_23670 0.45 -0.8 5,182,008 - AO353_23670 0.45 +0.8 5,182,008 - AO353_23670 0.45 +2.7 5,182,422 + -1.8 5,182,422 + +0.2 5,182,422 + -0.2 5,182,422 + +0.8 5,182,423 - +1.4 5,182,423 - +1.2 5,182,423 - -1.3 5,182,765 + AO353_23675 0.12 -1.5 5,182,765 + AO353_23675 0.12 +0.6 5,182,766 - AO353_23675 0.12 +1.4 5,182,766 - AO353_23675 0.12 -1.8 5,182,849 + AO353_23675 0.14 -1.2 5,182,849 + AO353_23675 0.14 +0.9 5,182,849 + AO353_23675 0.14 -0.6 5,182,850 - AO353_23675 0.14 +1.6 5,182,850 - AO353_23675 0.14 +0.6 5,182,850 - AO353_23675 0.14 -0.2 5,182,923 + AO353_23675 0.16 -0.2 5,182,924 - AO353_23675 0.16 -2.5 5,182,924 - AO353_23675 0.16 -1.0 5,182,924 - AO353_23675 0.16 -0.8 5,182,924 - AO353_23675 0.16 -0.4 5,183,059 - AO353_23675 0.20 +1.0 5,183,059 - AO353_23675 0.20 +0.2 5,183,097 + AO353_23675 0.21 +0.1 5,183,098 - AO353_23675 0.21 +2.0 5,183,098 - -0.6 5,183,098 - AO353_23675 0.21 +0.0 5,183,142 + AO353_23675 0.22 +1.1 5,183,143 - AO353_23675 0.22 +1.8 5,184,512 - AO353_23675 0.60 -0.2 5,184,650 - AO353_23675 0.63 -1.2 5,184,948 + AO353_23675 0.72 +0.2 5,184,948 + AO353_23675 0.72 +1.8 5,184,948 + AO353_23675 0.72 -0.8 5,184,948 + AO353_23675 0.72 -0.8 5,185,393 + AO353_23675 0.84 -1.3 5,185,393 + AO353_23675 0.84 +0.8 5,185,393 + AO353_23675 0.84 +0.2 5,185,394 - AO353_23675 0.84 +0.4 5,185,543 + AO353_23675 0.88 -2.5 5,185,543 + AO353_23675 0.88 -0.8 5,185,543 + AO353_23675 0.88 +0.4 5,185,543 + AO353_23675 0.88 +0.1 5,185,773 + -0.2 5,186,061 + +1.8 5,186,061 + -0.8 5,186,062 - -0.8 5,186,087 + -1.2 5,186,088 - +0.0 5,186,167 - AO353_23680 0.15 +1.0 5,186,301 - AO353_23680 0.26 +0.4 5,186,301 - AO353_23680 0.26 +1.6 5,186,556 + AO353_23680 0.46 -0.8 5,186,556 + AO353_23680 0.46 +1.0 5,186,556 + AO353_23680 0.46 -2.2 5,186,557 - AO353_23680 0.46 +0.5 5,186,557 - AO353_23680 0.46 -0.8 5,186,557 - AO353_23680 0.46 +0.5 5,186,557 - AO353_23680 0.46 -0.2 5,186,557 - AO353_23680 0.46 +0.2 5,186,557 - AO353_23680 0.46 +0.2 5,186,557 - AO353_23680 0.46 -0.4 5,186,751 + AO353_23680 0.62 +0.6 5,186,751 + AO353_23680 0.62 -0.6 5,186,751 + AO353_23680 0.62 +1.8 5,186,752 - AO353_23680 0.62 -0.8 5,186,752 - AO353_23680 0.62 -1.4
Or see this region's nucleotide sequence