Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23675

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23660 and AO353_23665 overlap by 4 nucleotidesAO353_23665 and AO353_23670 are separated by 4 nucleotidesAO353_23670 and AO353_23675 overlap by 4 nucleotidesAO353_23675 and AO353_23680 overlap by 4 nucleotides AO353_23660: AO353_23660 - hypothetical protein, at 5,181,265 to 5,181,474 _23660 AO353_23665: AO353_23665 - hypothetical protein, at 5,181,471 to 5,181,728 _23665 AO353_23670: AO353_23670 - glutathione S-transferase, at 5,181,733 to 5,182,344 _23670 AO353_23675: AO353_23675 - chromosome segregation protein SMC, at 5,182,341 to 5,185,982 _23675 AO353_23680: AO353_23680 - exonuclease SbcD, at 5,185,979 to 5,187,223 _23680 Position (kb) 5182 5183 5184 5185 5186Strain fitness (log2 ratio) -2 -1 0 1 2at 5181.642 kb on - strand, within AO353_23665at 5181.726 kb on + strandat 5181.727 kb on - strandat 5181.859 kb on + strand, within AO353_23670at 5181.860 kb on - strand, within AO353_23670at 5181.860 kb on - strand, within AO353_23670at 5181.911 kb on + strand, within AO353_23670at 5181.912 kb on - strand, within AO353_23670at 5181.912 kb on - strand, within AO353_23670at 5182.007 kb on + strand, within AO353_23670at 5182.007 kb on + strand, within AO353_23670at 5182.008 kb on - strand, within AO353_23670at 5182.008 kb on - strand, within AO353_23670at 5182.422 kb on + strandat 5182.422 kb on + strandat 5182.422 kb on + strandat 5182.422 kb on + strandat 5182.423 kb on - strandat 5182.423 kb on - strandat 5182.423 kb on - strandat 5182.765 kb on + strand, within AO353_23675at 5182.765 kb on + strand, within AO353_23675at 5182.766 kb on - strand, within AO353_23675at 5182.766 kb on - strand, within AO353_23675at 5182.849 kb on + strand, within AO353_23675at 5182.849 kb on + strand, within AO353_23675at 5182.849 kb on + strand, within AO353_23675at 5182.850 kb on - strand, within AO353_23675at 5182.850 kb on - strand, within AO353_23675at 5182.850 kb on - strand, within AO353_23675at 5182.923 kb on + strand, within AO353_23675at 5182.924 kb on - strand, within AO353_23675at 5182.924 kb on - strand, within AO353_23675at 5182.924 kb on - strand, within AO353_23675at 5182.924 kb on - strand, within AO353_23675at 5183.059 kb on - strand, within AO353_23675at 5183.059 kb on - strand, within AO353_23675at 5183.097 kb on + strand, within AO353_23675at 5183.098 kb on - strand, within AO353_23675at 5183.098 kb on - strandat 5183.098 kb on - strand, within AO353_23675at 5183.142 kb on + strand, within AO353_23675at 5183.143 kb on - strand, within AO353_23675at 5184.512 kb on - strand, within AO353_23675at 5184.650 kb on - strand, within AO353_23675at 5184.948 kb on + strand, within AO353_23675at 5184.948 kb on + strand, within AO353_23675at 5184.948 kb on + strand, within AO353_23675at 5184.948 kb on + strand, within AO353_23675at 5185.393 kb on + strand, within AO353_23675at 5185.393 kb on + strand, within AO353_23675at 5185.393 kb on + strand, within AO353_23675at 5185.394 kb on - strand, within AO353_23675at 5185.543 kb on + strand, within AO353_23675at 5185.543 kb on + strand, within AO353_23675at 5185.543 kb on + strand, within AO353_23675at 5185.543 kb on + strand, within AO353_23675at 5185.773 kb on + strandat 5186.061 kb on + strandat 5186.061 kb on + strandat 5186.062 kb on - strandat 5186.087 kb on + strandat 5186.088 kb on - strandat 5186.167 kb on - strand, within AO353_23680at 5186.301 kb on - strand, within AO353_23680at 5186.301 kb on - strand, within AO353_23680at 5186.556 kb on + strand, within AO353_23680at 5186.556 kb on + strand, within AO353_23680at 5186.556 kb on + strand, within AO353_23680at 5186.557 kb on - strand, within AO353_23680at 5186.557 kb on - strand, within AO353_23680at 5186.557 kb on - strand, within AO353_23680at 5186.557 kb on - strand, within AO353_23680at 5186.557 kb on - strand, within AO353_23680at 5186.557 kb on - strand, within AO353_23680at 5186.557 kb on - strand, within AO353_23680at 5186.751 kb on + strand, within AO353_23680at 5186.751 kb on + strand, within AO353_23680at 5186.751 kb on + strand, within AO353_23680at 5186.752 kb on - strand, within AO353_23680at 5186.752 kb on - strand, within AO353_23680

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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5,181,642 - AO353_23665 0.66 +0.4
5,181,726 + -0.6
5,181,727 - +1.1
5,181,859 + AO353_23670 0.21 -1.2
5,181,860 - AO353_23670 0.21 +0.3
5,181,860 - AO353_23670 0.21 +1.4
5,181,911 + AO353_23670 0.29 +0.0
5,181,912 - AO353_23670 0.29 +2.2
5,181,912 - AO353_23670 0.29 -1.0
5,182,007 + AO353_23670 0.45 -0.5
5,182,007 + AO353_23670 0.45 -0.8
5,182,008 - AO353_23670 0.45 +0.8
5,182,008 - AO353_23670 0.45 +2.7
5,182,422 + -1.8
5,182,422 + +0.2
5,182,422 + -0.2
5,182,422 + +0.8
5,182,423 - +1.4
5,182,423 - +1.2
5,182,423 - -1.3
5,182,765 + AO353_23675 0.12 -1.5
5,182,765 + AO353_23675 0.12 +0.6
5,182,766 - AO353_23675 0.12 +1.4
5,182,766 - AO353_23675 0.12 -1.8
5,182,849 + AO353_23675 0.14 -1.2
5,182,849 + AO353_23675 0.14 +0.9
5,182,849 + AO353_23675 0.14 -0.6
5,182,850 - AO353_23675 0.14 +1.6
5,182,850 - AO353_23675 0.14 +0.6
5,182,850 - AO353_23675 0.14 -0.2
5,182,923 + AO353_23675 0.16 -0.2
5,182,924 - AO353_23675 0.16 -2.5
5,182,924 - AO353_23675 0.16 -1.0
5,182,924 - AO353_23675 0.16 -0.8
5,182,924 - AO353_23675 0.16 -0.4
5,183,059 - AO353_23675 0.20 +1.0
5,183,059 - AO353_23675 0.20 +0.2
5,183,097 + AO353_23675 0.21 +0.1
5,183,098 - AO353_23675 0.21 +2.0
5,183,098 - -0.6
5,183,098 - AO353_23675 0.21 +0.0
5,183,142 + AO353_23675 0.22 +1.1
5,183,143 - AO353_23675 0.22 +1.8
5,184,512 - AO353_23675 0.60 -0.2
5,184,650 - AO353_23675 0.63 -1.2
5,184,948 + AO353_23675 0.72 +0.2
5,184,948 + AO353_23675 0.72 +1.8
5,184,948 + AO353_23675 0.72 -0.8
5,184,948 + AO353_23675 0.72 -0.8
5,185,393 + AO353_23675 0.84 -1.3
5,185,393 + AO353_23675 0.84 +0.8
5,185,393 + AO353_23675 0.84 +0.2
5,185,394 - AO353_23675 0.84 +0.4
5,185,543 + AO353_23675 0.88 -2.5
5,185,543 + AO353_23675 0.88 -0.8
5,185,543 + AO353_23675 0.88 +0.4
5,185,543 + AO353_23675 0.88 +0.1
5,185,773 + -0.2
5,186,061 + +1.8
5,186,061 + -0.8
5,186,062 - -0.8
5,186,087 + -1.2
5,186,088 - +0.0
5,186,167 - AO353_23680 0.15 +1.0
5,186,301 - AO353_23680 0.26 +0.4
5,186,301 - AO353_23680 0.26 +1.6
5,186,556 + AO353_23680 0.46 -0.8
5,186,556 + AO353_23680 0.46 +1.0
5,186,556 + AO353_23680 0.46 -2.2
5,186,557 - AO353_23680 0.46 +0.5
5,186,557 - AO353_23680 0.46 -0.8
5,186,557 - AO353_23680 0.46 +0.5
5,186,557 - AO353_23680 0.46 -0.2
5,186,557 - AO353_23680 0.46 +0.2
5,186,557 - AO353_23680 0.46 +0.2
5,186,557 - AO353_23680 0.46 -0.4
5,186,751 + AO353_23680 0.62 +0.6
5,186,751 + AO353_23680 0.62 -0.6
5,186,751 + AO353_23680 0.62 +1.8
5,186,752 - AO353_23680 0.62 -0.8
5,186,752 - AO353_23680 0.62 -1.4

Or see this region's nucleotide sequence