Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23555

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23545 and AO353_23550 are separated by 15 nucleotidesAO353_23550 and AO353_23555 are separated by 119 nucleotidesAO353_23555 and AO353_23560 are separated by 334 nucleotides AO353_23545: AO353_23545 - NADH oxidase, at 5,156,203 to 5,157,216 _23545 AO353_23550: AO353_23550 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 5,157,232 to 5,158,005 _23550 AO353_23555: AO353_23555 - DNA polymerase III subunit epsilon, at 5,158,125 to 5,158,883 _23555 AO353_23560: AO353_23560 - lysine decarboxylase, at 5,159,218 to 5,161,473 _23560 Position (kb) 5158 5159Strain fitness (log2 ratio) -2 -1 0 1 2at 5157.184 kb on + strandat 5157.185 kb on - strandat 5157.187 kb on + strandat 5157.215 kb on - strandat 5157.241 kb on + strandat 5157.241 kb on + strandat 5157.242 kb on - strandat 5157.242 kb on - strandat 5157.242 kb on - strandat 5157.242 kb on - strandat 5157.306 kb on + strandat 5157.307 kb on - strandat 5157.424 kb on + strand, within AO353_23550at 5157.480 kb on + strandat 5157.481 kb on - strand, within AO353_23550at 5157.481 kb on - strand, within AO353_23550at 5157.481 kb on - strand, within AO353_23550at 5157.482 kb on + strand, within AO353_23550at 5157.482 kb on + strand, within AO353_23550at 5157.482 kb on + strandat 5157.482 kb on + strand, within AO353_23550at 5157.482 kb on + strand, within AO353_23550at 5157.482 kb on + strand, within AO353_23550at 5157.482 kb on + strand, within AO353_23550at 5157.482 kb on + strand, within AO353_23550at 5157.482 kb on + strand, within AO353_23550at 5157.482 kb on + strand, within AO353_23550at 5157.483 kb on - strand, within AO353_23550at 5157.483 kb on - strand, within AO353_23550at 5157.483 kb on - strand, within AO353_23550at 5157.533 kb on - strand, within AO353_23550at 5157.686 kb on - strand, within AO353_23550at 5157.958 kb on + strandat 5157.958 kb on + strandat 5157.958 kb on + strandat 5157.958 kb on + strandat 5157.958 kb on + strandat 5157.959 kb on - strandat 5158.077 kb on + strandat 5158.881 kb on + strandat 5158.881 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.166 kb on - strandat 5159.176 kb on + strandat 5159.176 kb on + strandat 5159.187 kb on + strandat 5159.188 kb on - strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.223 kb on + strandat 5159.223 kb on + strandat 5159.224 kb on - strandat 5159.246 kb on + strandat 5159.246 kb on + strandat 5159.246 kb on + strandat 5159.247 kb on - strandat 5159.247 kb on - strandat 5159.353 kb on + strandat 5159.353 kb on + strandat 5159.353 kb on + strandat 5159.444 kb on + strand, within AO353_23560at 5159.584 kb on + strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.707 kb on + strand, within AO353_23560at 5159.707 kb on + strand, within AO353_23560at 5159.707 kb on + strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.746 kb on + strand, within AO353_23560at 5159.763 kb on - strand, within AO353_23560at 5159.797 kb on - strand, within AO353_23560at 5159.797 kb on - strand, within AO353_23560at 5159.797 kb on - strand, within AO353_23560at 5159.797 kb on - strand, within AO353_23560

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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5,157,184 + -0.2
5,157,185 - +0.8
5,157,187 + -1.8
5,157,215 - +0.0
5,157,241 + +0.1
5,157,241 + +1.4
5,157,242 - +1.4
5,157,242 - -0.7
5,157,242 - -0.5
5,157,242 - +1.4
5,157,306 + -1.2
5,157,307 - +0.2
5,157,424 + AO353_23550 0.25 +0.2
5,157,480 + +0.4
5,157,481 - AO353_23550 0.32 +2.2
5,157,481 - AO353_23550 0.32 -0.2
5,157,481 - AO353_23550 0.32 +0.8
5,157,482 + AO353_23550 0.32 +1.8
5,157,482 + AO353_23550 0.32 +0.9
5,157,482 + +0.1
5,157,482 + AO353_23550 0.32 -1.2
5,157,482 + AO353_23550 0.32 -0.2
5,157,482 + AO353_23550 0.32 -0.0
5,157,482 + AO353_23550 0.32 +0.0
5,157,482 + AO353_23550 0.32 -0.2
5,157,482 + AO353_23550 0.32 -0.0
5,157,482 + AO353_23550 0.32 +1.4
5,157,483 - AO353_23550 0.32 +0.8
5,157,483 - AO353_23550 0.32 +1.7
5,157,483 - AO353_23550 0.32 -0.2
5,157,533 - AO353_23550 0.39 +0.2
5,157,686 - AO353_23550 0.59 +0.2
5,157,958 + +0.2
5,157,958 + +1.5
5,157,958 + -0.8
5,157,958 + -0.2
5,157,958 + -0.2
5,157,959 - -0.2
5,158,077 + -1.2
5,158,881 + +0.8
5,158,881 + +0.5
5,159,046 + -0.2
5,159,046 + -1.2
5,159,046 + -2.0
5,159,046 + -1.0
5,159,046 + +2.4
5,159,046 + +0.2
5,159,046 + -0.8
5,159,046 + +0.6
5,159,046 + +0.6
5,159,046 + -0.5
5,159,046 + +0.2
5,159,166 - -2.5
5,159,176 + -1.0
5,159,176 + +0.4
5,159,187 + +0.3
5,159,188 - +1.1
5,159,221 + +1.4
5,159,221 + +0.4
5,159,221 + +0.0
5,159,221 + +1.6
5,159,221 + -1.0
5,159,221 + +1.6
5,159,221 + -0.2
5,159,221 + -0.8
5,159,221 + -0.6
5,159,222 - +0.9
5,159,222 - +0.0
5,159,222 - -0.6
5,159,222 - +0.6
5,159,222 - -0.5
5,159,222 - +1.1
5,159,222 - -0.4
5,159,222 - +0.4
5,159,222 - -0.4
5,159,223 + +1.6
5,159,223 + +0.6
5,159,224 - -0.2
5,159,246 + +0.6
5,159,246 + +0.6
5,159,246 + -0.4
5,159,247 - +0.8
5,159,247 - -0.8
5,159,353 + +0.7
5,159,353 + +0.6
5,159,353 + -1.2
5,159,444 + AO353_23560 0.10 +0.0
5,159,584 + AO353_23560 0.16 +0.3
5,159,585 - AO353_23560 0.16 +0.8
5,159,585 - AO353_23560 0.16 +0.7
5,159,585 - AO353_23560 0.16 -1.2
5,159,585 - AO353_23560 0.16 -0.5
5,159,585 - AO353_23560 0.16 -0.7
5,159,585 - AO353_23560 0.16 +0.5
5,159,585 - AO353_23560 0.16 +0.8
5,159,707 + AO353_23560 0.22 -0.2
5,159,707 + AO353_23560 0.22 -0.2
5,159,707 + AO353_23560 0.22 +0.8
5,159,708 - AO353_23560 0.22 +1.5
5,159,708 - AO353_23560 0.22 -0.8
5,159,708 - AO353_23560 0.22 -1.1
5,159,708 - AO353_23560 0.22 -0.2
5,159,708 - AO353_23560 0.22 -0.2
5,159,708 - AO353_23560 0.22 -1.1
5,159,746 + AO353_23560 0.23 -0.5
5,159,763 - AO353_23560 0.24 -1.2
5,159,797 - AO353_23560 0.26 +0.0
5,159,797 - AO353_23560 0.26 -1.6
5,159,797 - AO353_23560 0.26 -2.2
5,159,797 - AO353_23560 0.26 +0.8

Or see this region's nucleotide sequence