Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23125

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23120 and AO353_23125 are separated by 21 nucleotidesAO353_23125 and AO353_23130 are separated by 16 nucleotidesAO353_23130 and AO353_23135 overlap by 4 nucleotides AO353_23120: AO353_23120 - 3-phenylpropionate dioxygenase, at 5,074,333 to 5,075,367 _23120 AO353_23125: AO353_23125 - hypothetical protein, at 5,075,389 to 5,075,616 _23125 AO353_23130: AO353_23130 - glyoxalase, at 5,075,633 to 5,076,598 _23130 AO353_23135: AO353_23135 - aldehyde dehydrogenase, at 5,076,595 to 5,078,091 _23135 Position (kb) 5075 5076Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5074.526 kb on + strand, within AO353_23120at 5074.527 kb on - strand, within AO353_23120at 5074.617 kb on - strand, within AO353_23120at 5074.794 kb on + strand, within AO353_23120at 5074.835 kb on + strand, within AO353_23120at 5074.835 kb on + strand, within AO353_23120at 5074.835 kb on + strand, within AO353_23120at 5074.835 kb on + strand, within AO353_23120at 5074.836 kb on - strand, within AO353_23120at 5074.875 kb on - strand, within AO353_23120at 5074.901 kb on + strand, within AO353_23120at 5074.901 kb on + strand, within AO353_23120at 5074.991 kb on + strand, within AO353_23120at 5074.991 kb on + strand, within AO353_23120at 5074.991 kb on + strand, within AO353_23120at 5074.991 kb on + strand, within AO353_23120at 5074.992 kb on - strand, within AO353_23120at 5075.104 kb on + strand, within AO353_23120at 5075.105 kb on - strand, within AO353_23120at 5075.105 kb on - strand, within AO353_23120at 5075.120 kb on + strand, within AO353_23120at 5075.241 kb on - strand, within AO353_23120at 5075.355 kb on + strandat 5075.355 kb on + strandat 5075.355 kb on + strandat 5075.355 kb on + strandat 5075.355 kb on + strandat 5075.355 kb on + strandat 5075.355 kb on + strandat 5075.355 kb on + strandat 5075.355 kb on + strandat 5075.355 kb on + strandat 5075.356 kb on - strandat 5075.356 kb on - strandat 5075.356 kb on - strandat 5075.356 kb on - strandat 5075.361 kb on + strandat 5075.361 kb on + strandat 5075.362 kb on - strandat 5075.372 kb on + strandat 5075.372 kb on + strandat 5075.372 kb on + strandat 5075.373 kb on - strandat 5075.373 kb on - strandat 5075.373 kb on - strandat 5075.373 kb on - strandat 5075.373 kb on - strandat 5075.376 kb on + strandat 5075.376 kb on + strandat 5075.376 kb on + strandat 5075.418 kb on + strand, within AO353_23125at 5075.418 kb on + strand, within AO353_23125at 5075.418 kb on + strand, within AO353_23125at 5075.418 kb on + strand, within AO353_23125at 5075.419 kb on - strand, within AO353_23125at 5075.419 kb on - strand, within AO353_23125at 5075.419 kb on - strand, within AO353_23125at 5075.420 kb on + strand, within AO353_23125at 5075.420 kb on + strand, within AO353_23125at 5075.420 kb on + strand, within AO353_23125at 5075.421 kb on - strand, within AO353_23125at 5075.421 kb on - strand, within AO353_23125at 5075.597 kb on + strandat 5075.597 kb on + strandat 5075.597 kb on + strandat 5075.598 kb on - strandat 5075.634 kb on + strandat 5075.634 kb on + strandat 5075.635 kb on - strandat 5075.802 kb on + strand, within AO353_23130at 5075.802 kb on + strand, within AO353_23130at 5075.802 kb on + strand, within AO353_23130at 5075.803 kb on - strand, within AO353_23130at 5075.803 kb on - strand, within AO353_23130at 5075.803 kb on - strand, within AO353_23130at 5075.805 kb on + strand, within AO353_23130at 5075.806 kb on - strand, within AO353_23130at 5075.928 kb on - strand, within AO353_23130at 5075.928 kb on - strand, within AO353_23130at 5076.093 kb on + strand, within AO353_23130at 5076.094 kb on - strand, within AO353_23130at 5076.094 kb on - strand, within AO353_23130at 5076.168 kb on + strand, within AO353_23130at 5076.168 kb on + strand, within AO353_23130at 5076.169 kb on - strand, within AO353_23130at 5076.169 kb on - strand, within AO353_23130at 5076.348 kb on + strand, within AO353_23130at 5076.348 kb on + strand, within AO353_23130at 5076.349 kb on - strand, within AO353_23130at 5076.567 kb on + strandat 5076.567 kb on + strandat 5076.567 kb on + strandat 5076.568 kb on - strandat 5076.588 kb on - strandat 5076.598 kb on + strandat 5076.598 kb on + strandat 5076.598 kb on + strandat 5076.598 kb on + strandat 5076.599 kb on - strandat 5076.604 kb on + strandat 5076.604 kb on + strandat 5076.604 kb on + strandat 5076.604 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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5,074,526 + AO353_23120 0.19 +0.1
5,074,527 - AO353_23120 0.19 +0.8
5,074,617 - AO353_23120 0.27 +1.8
5,074,794 + AO353_23120 0.45 -0.8
5,074,835 + AO353_23120 0.49 -0.2
5,074,835 + AO353_23120 0.49 +0.6
5,074,835 + AO353_23120 0.49 +1.8
5,074,835 + AO353_23120 0.49 -0.8
5,074,836 - AO353_23120 0.49 -0.3
5,074,875 - AO353_23120 0.52 +0.2
5,074,901 + AO353_23120 0.55 +0.4
5,074,901 + AO353_23120 0.55 +0.4
5,074,991 + AO353_23120 0.64 -0.2
5,074,991 + AO353_23120 0.64 +0.6
5,074,991 + AO353_23120 0.64 +3.4
5,074,991 + AO353_23120 0.64 +0.8
5,074,992 - AO353_23120 0.64 +1.6
5,075,104 + AO353_23120 0.74 -1.2
5,075,105 - AO353_23120 0.75 +0.5
5,075,105 - AO353_23120 0.75 -0.2
5,075,120 + AO353_23120 0.76 -0.8
5,075,241 - AO353_23120 0.88 +0.0
5,075,355 + -2.1
5,075,355 + +1.0
5,075,355 + -0.2
5,075,355 + +1.8
5,075,355 + -1.8
5,075,355 + +0.0
5,075,355 + +2.4
5,075,355 + +0.8
5,075,355 + +0.2
5,075,355 + +0.3
5,075,356 - -0.6
5,075,356 - -1.2
5,075,356 - -1.5
5,075,356 - -1.5
5,075,361 + +1.4
5,075,361 + +0.2
5,075,362 - -0.7
5,075,372 + -1.2
5,075,372 + +1.4
5,075,372 + +1.1
5,075,373 - -1.8
5,075,373 - +0.0
5,075,373 - -0.8
5,075,373 - -1.5
5,075,373 - +0.2
5,075,376 + +0.8
5,075,376 + +1.3
5,075,376 + +0.6
5,075,418 + AO353_23125 0.13 +1.9
5,075,418 + AO353_23125 0.13 +1.8
5,075,418 + AO353_23125 0.13 +1.7
5,075,418 + AO353_23125 0.13 +0.8
5,075,419 - AO353_23125 0.13 -0.1
5,075,419 - AO353_23125 0.13 +0.1
5,075,419 - AO353_23125 0.13 +2.1
5,075,420 + AO353_23125 0.14 -0.2
5,075,420 + AO353_23125 0.14 -1.8
5,075,420 + AO353_23125 0.14 -0.4
5,075,421 - AO353_23125 0.14 +0.2
5,075,421 - AO353_23125 0.14 +0.7
5,075,597 + -0.2
5,075,597 + -0.8
5,075,597 + +1.1
5,075,598 - +0.5
5,075,634 + -0.8
5,075,634 + -2.2
5,075,635 - +0.0
5,075,802 + AO353_23130 0.17 +0.0
5,075,802 + AO353_23130 0.17 -0.2
5,075,802 + AO353_23130 0.17 -0.0
5,075,803 - AO353_23130 0.18 +1.1
5,075,803 - AO353_23130 0.18 -1.8
5,075,803 - AO353_23130 0.18 -0.4
5,075,805 + AO353_23130 0.18 -0.6
5,075,806 - AO353_23130 0.18 -0.8
5,075,928 - AO353_23130 0.31 +1.7
5,075,928 - AO353_23130 0.31 +0.8
5,076,093 + AO353_23130 0.48 -0.2
5,076,094 - AO353_23130 0.48 +0.2
5,076,094 - AO353_23130 0.48 -0.5
5,076,168 + AO353_23130 0.55 +0.4
5,076,168 + AO353_23130 0.55 -1.2
5,076,169 - AO353_23130 0.55 +2.1
5,076,169 - AO353_23130 0.55 +0.2
5,076,348 + AO353_23130 0.74 -0.2
5,076,348 + AO353_23130 0.74 +0.0
5,076,349 - AO353_23130 0.74 +0.8
5,076,567 + -0.9
5,076,567 + +0.4
5,076,567 + -1.0
5,076,568 - -0.5
5,076,588 - +1.4
5,076,598 + +1.7
5,076,598 + -0.2
5,076,598 + -0.2
5,076,598 + -0.0
5,076,599 - +0.8
5,076,604 + +0.3
5,076,604 + -0.7
5,076,604 + +1.2
5,076,604 + -0.8

Or see this region's nucleotide sequence