Experiment: Ionizing radiation, 126.196 Gy,
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22710 and AO353_22715 overlap by 4 nucleotides AO353_22715 and AO353_22720 are separated by 197 nucleotides AO353_22720 and AO353_22725 are separated by 30 nucleotides
AO353_22710: AO353_22710 - DNA repair nucleotidyltransferase, at 4,971,910 to 4,973,325
_22710
AO353_22715: AO353_22715 - DNA polymerase, at 4,973,322 to 4,976,399
_22715
AO353_22720: AO353_22720 - curli production assembly protein CsgG, at 4,976,597 to 4,977,277
_22720
AO353_22725: AO353_22725 - hypothetical protein, at 4,977,308 to 4,977,679
_22725
Position (kb)
4973
4974
4975
4976
4977 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4972.367 kb on - strand at 4972.367 kb on - strand, within AO353_22710 at 4972.367 kb on - strand, within AO353_22710 at 4972.367 kb on - strand, within AO353_22710 at 4972.401 kb on - strand, within AO353_22710 at 4972.600 kb on + strand, within AO353_22710 at 4972.601 kb on - strand, within AO353_22710 at 4972.601 kb on - strand, within AO353_22710 at 4973.108 kb on + strand, within AO353_22710 at 4973.108 kb on + strand, within AO353_22710 at 4973.108 kb on + strand, within AO353_22710 at 4973.108 kb on + strand, within AO353_22710 at 4973.108 kb on + strand, within AO353_22710 at 4973.109 kb on - strand, within AO353_22710 at 4973.109 kb on - strand, within AO353_22710 at 4973.109 kb on - strand, within AO353_22710 at 4973.109 kb on - strand, within AO353_22710 at 4973.109 kb on - strand, within AO353_22710 at 4973.109 kb on - strand, within AO353_22710 at 4973.230 kb on + strand at 4973.230 kb on + strand at 4973.230 kb on + strand at 4973.230 kb on + strand at 4973.231 kb on - strand at 4973.233 kb on + strand at 4973.233 kb on + strand at 4973.233 kb on + strand at 4973.233 kb on + strand at 4973.233 kb on + strand at 4973.234 kb on - strand at 4973.234 kb on - strand at 4973.234 kb on - strand at 4973.277 kb on + strand at 4973.277 kb on + strand at 4973.278 kb on - strand at 4973.278 kb on - strand at 4973.278 kb on - strand at 4973.503 kb on + strand at 4973.504 kb on - strand at 4973.504 kb on - strand at 4973.741 kb on + strand, within AO353_22715 at 4974.009 kb on + strand, within AO353_22715 at 4974.056 kb on + strand, within AO353_22715 at 4974.056 kb on + strand, within AO353_22715 at 4974.057 kb on - strand, within AO353_22715 at 4974.057 kb on - strand, within AO353_22715 at 4974.134 kb on - strand, within AO353_22715 at 4974.249 kb on + strand, within AO353_22715 at 4974.249 kb on + strand, within AO353_22715 at 4974.249 kb on + strand, within AO353_22715 at 4974.249 kb on + strand, within AO353_22715 at 4974.250 kb on - strand, within AO353_22715 at 4974.250 kb on - strand, within AO353_22715 at 4974.250 kb on - strand, within AO353_22715 at 4974.250 kb on - strand, within AO353_22715 at 4974.477 kb on + strand, within AO353_22715 at 4974.477 kb on + strand, within AO353_22715 at 4974.478 kb on - strand, within AO353_22715 at 4974.478 kb on - strand, within AO353_22715 at 4974.478 kb on - strand, within AO353_22715 at 4974.478 kb on - strand, within AO353_22715 at 4974.478 kb on - strand, within AO353_22715 at 4974.534 kb on + strand, within AO353_22715 at 4974.534 kb on + strand, within AO353_22715 at 4974.535 kb on - strand, within AO353_22715 at 4974.535 kb on - strand at 4974.535 kb on - strand, within AO353_22715 at 4974.535 kb on - strand, within AO353_22715 at 4974.535 kb on - strand, within AO353_22715 at 4974.535 kb on - strand, within AO353_22715 at 4974.535 kb on - strand, within AO353_22715 at 4974.535 kb on - strand, within AO353_22715 at 4974.973 kb on + strand, within AO353_22715 at 4974.973 kb on + strand, within AO353_22715 at 4974.974 kb on - strand, within AO353_22715 at 4974.974 kb on - strand, within AO353_22715 at 4974.974 kb on - strand, within AO353_22715 at 4974.996 kb on + strand, within AO353_22715 at 4975.092 kb on + strand, within AO353_22715 at 4975.093 kb on - strand, within AO353_22715 at 4975.158 kb on + strand, within AO353_22715 at 4975.158 kb on + strand, within AO353_22715 at 4975.159 kb on - strand, within AO353_22715 at 4975.159 kb on - strand, within AO353_22715 at 4975.159 kb on - strand, within AO353_22715 at 4975.159 kb on - strand, within AO353_22715 at 4975.172 kb on + strand, within AO353_22715 at 4975.172 kb on + strand, within AO353_22715 at 4975.173 kb on - strand, within AO353_22715 at 4975.194 kb on + strand, within AO353_22715 at 4975.194 kb on + strand, within AO353_22715 at 4975.290 kb on + strand, within AO353_22715 at 4975.291 kb on - strand, within AO353_22715 at 4975.291 kb on - strand, within AO353_22715 at 4975.578 kb on + strand, within AO353_22715 at 4975.579 kb on - strand, within AO353_22715 at 4975.579 kb on - strand, within AO353_22715 at 4975.579 kb on - strand, within AO353_22715 at 4976.021 kb on + strand, within AO353_22715 at 4976.382 kb on - strand at 4976.397 kb on + strand at 4976.410 kb on + strand at 4976.410 kb on + strand at 4976.411 kb on - strand at 4976.411 kb on - strand at 4976.436 kb on - strand at 4976.436 kb on - strand at 4976.437 kb on + strand at 4976.437 kb on + strand at 4976.438 kb on - strand at 4976.438 kb on - strand at 4976.643 kb on + strand at 4976.643 kb on + strand at 4976.643 kb on + strand at 4976.644 kb on - strand at 4976.646 kb on + strand at 4976.646 kb on + strand at 4976.646 kb on + strand at 4976.647 kb on - strand at 4976.647 kb on - strand at 4976.777 kb on + strand, within AO353_22720 at 4976.777 kb on + strand, within AO353_22720 at 4976.778 kb on - strand, within AO353_22720 at 4976.778 kb on - strand, within AO353_22720 at 4976.778 kb on - strand, within AO353_22720 at 4976.778 kb on - strand, within AO353_22720 at 4977.050 kb on + strand, within AO353_22720 at 4977.051 kb on - strand, within AO353_22720 at 4977.080 kb on - strand, within AO353_22720 at 4977.101 kb on + strand, within AO353_22720 at 4977.101 kb on + strand, within AO353_22720 at 4977.125 kb on + strand, within AO353_22720 at 4977.125 kb on + strand, within AO353_22720 at 4977.174 kb on - strand, within AO353_22720 at 4977.301 kb on + strand at 4977.301 kb on + strand at 4977.301 kb on + strand at 4977.301 kb on + strand at 4977.302 kb on - strand at 4977.302 kb on - strand at 4977.302 kb on - strand at 4977.302 kb on - strand at 4977.302 kb on - strand at 4977.302 kb on - strand at 4977.320 kb on + strand at 4977.320 kb on + strand at 4977.320 kb on + strand at 4977.320 kb on + strand at 4977.320 kb on + strand at 4977.320 kb on + strand at 4977.321 kb on - strand at 4977.321 kb on - strand at 4977.321 kb on - strand at 4977.321 kb on - strand at 4977.321 kb on - strand at 4977.321 kb on - strand at 4977.322 kb on + strand at 4977.322 kb on + strand at 4977.322 kb on + strand at 4977.322 kb on + strand at 4977.322 kb on + strand at 4977.322 kb on + strand at 4977.322 kb on + strand at 4977.323 kb on - strand at 4977.323 kb on - strand at 4977.323 kb on - strand at 4977.323 kb on - strand at 4977.323 kb on - strand at 4977.323 kb on - strand at 4977.323 kb on - strand at 4977.323 kb on - strand at 4977.323 kb on - strand at 4977.323 kb on - strand at 4977.323 kb on - strand at 4977.398 kb on + strand, within AO353_22725
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy, remove 4,972,367 - -0.5 4,972,367 - AO353_22710 0.32 +1.4 4,972,367 - AO353_22710 0.32 +0.1 4,972,367 - AO353_22710 0.32 +1.1 4,972,401 - AO353_22710 0.35 -0.9 4,972,600 + AO353_22710 0.49 -0.6 4,972,601 - AO353_22710 0.49 -0.2 4,972,601 - AO353_22710 0.49 -1.4 4,973,108 + AO353_22710 0.85 -1.2 4,973,108 + AO353_22710 0.85 +1.4 4,973,108 + AO353_22710 0.85 +0.0 4,973,108 + AO353_22710 0.85 +0.1 4,973,108 + AO353_22710 0.85 -0.2 4,973,109 - AO353_22710 0.85 -1.5 4,973,109 - AO353_22710 0.85 +0.8 4,973,109 - AO353_22710 0.85 -0.5 4,973,109 - AO353_22710 0.85 +0.4 4,973,109 - AO353_22710 0.85 -1.8 4,973,109 - AO353_22710 0.85 +1.4 4,973,230 + +0.4 4,973,230 + +0.8 4,973,230 + +1.3 4,973,230 + +0.8 4,973,231 - -2.0 4,973,233 + +1.3 4,973,233 + +0.5 4,973,233 + -0.3 4,973,233 + -0.4 4,973,233 + +1.0 4,973,234 - +0.5 4,973,234 - +0.5 4,973,234 - -0.9 4,973,277 + +0.3 4,973,277 + +0.4 4,973,278 - -2.2 4,973,278 - -1.8 4,973,278 - -0.2 4,973,503 + -1.2 4,973,504 - +0.4 4,973,504 - +0.1 4,973,741 + AO353_22715 0.14 -1.8 4,974,009 + AO353_22715 0.22 +1.1 4,974,056 + AO353_22715 0.24 +0.3 4,974,056 + AO353_22715 0.24 -1.2 4,974,057 - AO353_22715 0.24 -0.6 4,974,057 - AO353_22715 0.24 +0.1 4,974,134 - AO353_22715 0.26 -2.4 4,974,249 + AO353_22715 0.30 -0.2 4,974,249 + AO353_22715 0.30 -2.2 4,974,249 + AO353_22715 0.30 -0.2 4,974,249 + AO353_22715 0.30 -0.5 4,974,250 - AO353_22715 0.30 +0.8 4,974,250 - AO353_22715 0.30 -0.2 4,974,250 - AO353_22715 0.30 +0.4 4,974,250 - AO353_22715 0.30 +1.3 4,974,477 + AO353_22715 0.38 -0.2 4,974,477 + AO353_22715 0.38 +0.4 4,974,478 - AO353_22715 0.38 +0.6 4,974,478 - AO353_22715 0.38 +0.4 4,974,478 - AO353_22715 0.38 +0.8 4,974,478 - AO353_22715 0.38 -0.8 4,974,478 - AO353_22715 0.38 -0.8 4,974,534 + AO353_22715 0.39 +0.0 4,974,534 + AO353_22715 0.39 -1.0 4,974,535 - AO353_22715 0.39 -0.2 4,974,535 - +0.8 4,974,535 - AO353_22715 0.39 +1.1 4,974,535 - AO353_22715 0.39 +0.2 4,974,535 - AO353_22715 0.39 -1.8 4,974,535 - AO353_22715 0.39 -1.8 4,974,535 - AO353_22715 0.39 -0.7 4,974,535 - AO353_22715 0.39 +0.4 4,974,973 + AO353_22715 0.54 +0.8 4,974,973 + AO353_22715 0.54 +0.1 4,974,974 - AO353_22715 0.54 -0.7 4,974,974 - AO353_22715 0.54 -1.8 4,974,974 - AO353_22715 0.54 +0.5 4,974,996 + AO353_22715 0.54 +0.2 4,975,092 + AO353_22715 0.58 +1.1 4,975,093 - AO353_22715 0.58 +0.6 4,975,158 + AO353_22715 0.60 +0.2 4,975,158 + AO353_22715 0.60 -0.1 4,975,159 - AO353_22715 0.60 +0.3 4,975,159 - AO353_22715 0.60 -0.6 4,975,159 - AO353_22715 0.60 +0.8 4,975,159 - AO353_22715 0.60 +0.6 4,975,172 + AO353_22715 0.60 +0.0 4,975,172 + AO353_22715 0.60 +0.8 4,975,173 - AO353_22715 0.60 +2.1 4,975,194 + AO353_22715 0.61 -2.2 4,975,194 + AO353_22715 0.61 -2.8 4,975,290 + AO353_22715 0.64 -1.4 4,975,291 - AO353_22715 0.64 +0.2 4,975,291 - AO353_22715 0.64 -0.8 4,975,578 + AO353_22715 0.73 -0.2 4,975,579 - AO353_22715 0.73 -1.0 4,975,579 - AO353_22715 0.73 +0.6 4,975,579 - AO353_22715 0.73 +2.1 4,976,021 + AO353_22715 0.88 -0.2 4,976,382 - +0.5 4,976,397 + -1.2 4,976,410 + +1.0 4,976,410 + -0.5 4,976,411 - -0.9 4,976,411 - -0.3 4,976,436 - -0.5 4,976,436 - -0.2 4,976,437 + -0.5 4,976,437 + -2.2 4,976,438 - +1.1 4,976,438 - +2.4 4,976,643 + -0.2 4,976,643 + -0.5 4,976,643 + -0.5 4,976,644 - +1.0 4,976,646 + -0.8 4,976,646 + +1.2 4,976,646 + -0.2 4,976,647 - -1.2 4,976,647 - +0.6 4,976,777 + AO353_22720 0.26 +1.0 4,976,777 + AO353_22720 0.26 -0.5 4,976,778 - AO353_22720 0.27 -0.2 4,976,778 - AO353_22720 0.27 +1.1 4,976,778 - AO353_22720 0.27 +1.0 4,976,778 - AO353_22720 0.27 -0.4 4,977,050 + AO353_22720 0.67 +1.2 4,977,051 - AO353_22720 0.67 +0.6 4,977,080 - AO353_22720 0.71 -0.6 4,977,101 + AO353_22720 0.74 +0.1 4,977,101 + AO353_22720 0.74 +1.1 4,977,125 + AO353_22720 0.78 -0.1 4,977,125 + AO353_22720 0.78 +0.3 4,977,174 - AO353_22720 0.85 +0.4 4,977,301 + -1.0 4,977,301 + -0.4 4,977,301 + -0.8 4,977,301 + -1.2 4,977,302 - -1.2 4,977,302 - -0.2 4,977,302 - +0.8 4,977,302 - +0.8 4,977,302 - +0.2 4,977,302 - -0.8 4,977,320 + +1.8 4,977,320 + +0.8 4,977,320 + -1.2 4,977,320 + +0.2 4,977,320 + +0.2 4,977,320 + +0.3 4,977,321 - +0.8 4,977,321 - +0.4 4,977,321 - -1.9 4,977,321 - +1.1 4,977,321 - -1.2 4,977,321 - -0.9 4,977,322 + -0.5 4,977,322 + -0.7 4,977,322 + -0.2 4,977,322 + -2.2 4,977,322 + +1.4 4,977,322 + +1.7 4,977,322 + +0.8 4,977,323 - -0.6 4,977,323 - -0.4 4,977,323 - -0.2 4,977,323 - -0.6 4,977,323 - -0.5 4,977,323 - +1.4 4,977,323 - +0.5 4,977,323 - +0.1 4,977,323 - -1.0 4,977,323 - -1.0 4,977,323 - -0.2 4,977,398 + AO353_22725 0.24 +1.2
Or see this region's nucleotide sequence