Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22710

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22700 and AO353_22705 overlap by 1 nucleotidesAO353_22705 and AO353_22710 are separated by 7 nucleotidesAO353_22710 and AO353_22715 overlap by 4 nucleotides AO353_22700: AO353_22700 - LexA family transcriptional regulator, at 4,970,668 to 4,971,285 _22700 AO353_22705: AO353_22705 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 4,971,285 to 4,971,902 _22705 AO353_22710: AO353_22710 - DNA repair nucleotidyltransferase, at 4,971,910 to 4,973,325 _22710 AO353_22715: AO353_22715 - DNA polymerase, at 4,973,322 to 4,976,399 _22715 Position (kb) 4971 4972 4973 4974Strain fitness (log2 ratio) -3 -2 -1 0 1at 4971.019 kb on + strand, within AO353_22700at 4971.208 kb on + strand, within AO353_22700at 4971.209 kb on - strand, within AO353_22700at 4971.209 kb on - strand, within AO353_22700at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.543 kb on + strand, within AO353_22705at 4971.544 kb on - strand, within AO353_22705at 4971.779 kb on + strand, within AO353_22705at 4971.835 kb on + strand, within AO353_22705at 4971.924 kb on + strandat 4971.924 kb on + strandat 4971.925 kb on - strandat 4971.925 kb on - strandat 4971.925 kb on - strandat 4972.123 kb on + strand, within AO353_22710at 4972.123 kb on + strand, within AO353_22710at 4972.123 kb on + strand, within AO353_22710at 4972.367 kb on - strandat 4972.367 kb on - strand, within AO353_22710at 4972.367 kb on - strand, within AO353_22710at 4972.367 kb on - strand, within AO353_22710at 4972.401 kb on - strand, within AO353_22710at 4972.600 kb on + strand, within AO353_22710at 4972.601 kb on - strand, within AO353_22710at 4972.601 kb on - strand, within AO353_22710at 4973.108 kb on + strand, within AO353_22710at 4973.108 kb on + strand, within AO353_22710at 4973.108 kb on + strand, within AO353_22710at 4973.108 kb on + strand, within AO353_22710at 4973.108 kb on + strand, within AO353_22710at 4973.109 kb on - strand, within AO353_22710at 4973.109 kb on - strand, within AO353_22710at 4973.109 kb on - strand, within AO353_22710at 4973.109 kb on - strand, within AO353_22710at 4973.109 kb on - strand, within AO353_22710at 4973.109 kb on - strand, within AO353_22710at 4973.230 kb on + strandat 4973.230 kb on + strandat 4973.230 kb on + strandat 4973.230 kb on + strandat 4973.231 kb on - strandat 4973.233 kb on + strandat 4973.233 kb on + strandat 4973.233 kb on + strandat 4973.233 kb on + strandat 4973.233 kb on + strandat 4973.234 kb on - strandat 4973.234 kb on - strandat 4973.234 kb on - strandat 4973.277 kb on + strandat 4973.277 kb on + strandat 4973.278 kb on - strandat 4973.278 kb on - strandat 4973.278 kb on - strandat 4973.503 kb on + strandat 4973.504 kb on - strandat 4973.504 kb on - strandat 4973.741 kb on + strand, within AO353_22715at 4974.009 kb on + strand, within AO353_22715at 4974.056 kb on + strand, within AO353_22715at 4974.056 kb on + strand, within AO353_22715at 4974.057 kb on - strand, within AO353_22715at 4974.057 kb on - strand, within AO353_22715at 4974.134 kb on - strand, within AO353_22715at 4974.249 kb on + strand, within AO353_22715at 4974.249 kb on + strand, within AO353_22715at 4974.249 kb on + strand, within AO353_22715at 4974.249 kb on + strand, within AO353_22715at 4974.250 kb on - strand, within AO353_22715at 4974.250 kb on - strand, within AO353_22715at 4974.250 kb on - strand, within AO353_22715at 4974.250 kb on - strand, within AO353_22715

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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4,971,019 + AO353_22700 0.57 +0.8
4,971,208 + AO353_22700 0.87 -0.2
4,971,209 - AO353_22700 0.88 -0.7
4,971,209 - AO353_22700 0.88 +0.1
4,971,543 + AO353_22705 0.42 -0.6
4,971,543 + AO353_22705 0.42 -0.2
4,971,543 + AO353_22705 0.42 +1.1
4,971,543 + AO353_22705 0.42 +0.8
4,971,543 + AO353_22705 0.42 +1.1
4,971,543 + AO353_22705 0.42 +1.4
4,971,543 + AO353_22705 0.42 -0.1
4,971,544 - AO353_22705 0.42 -1.4
4,971,779 + AO353_22705 0.80 -0.2
4,971,835 + AO353_22705 0.89 -1.8
4,971,924 + -1.8
4,971,924 + +0.8
4,971,925 - +0.8
4,971,925 - +1.4
4,971,925 - -0.6
4,972,123 + AO353_22710 0.15 +0.0
4,972,123 + AO353_22710 0.15 -2.8
4,972,123 + AO353_22710 0.15 +1.6
4,972,367 - -0.5
4,972,367 - AO353_22710 0.32 +1.4
4,972,367 - AO353_22710 0.32 +0.1
4,972,367 - AO353_22710 0.32 +1.1
4,972,401 - AO353_22710 0.35 -0.9
4,972,600 + AO353_22710 0.49 -0.6
4,972,601 - AO353_22710 0.49 -0.2
4,972,601 - AO353_22710 0.49 -1.4
4,973,108 + AO353_22710 0.85 -1.2
4,973,108 + AO353_22710 0.85 +1.4
4,973,108 + AO353_22710 0.85 +0.0
4,973,108 + AO353_22710 0.85 +0.1
4,973,108 + AO353_22710 0.85 -0.2
4,973,109 - AO353_22710 0.85 -1.5
4,973,109 - AO353_22710 0.85 +0.8
4,973,109 - AO353_22710 0.85 -0.5
4,973,109 - AO353_22710 0.85 +0.4
4,973,109 - AO353_22710 0.85 -1.8
4,973,109 - AO353_22710 0.85 +1.4
4,973,230 + +0.4
4,973,230 + +0.8
4,973,230 + +1.3
4,973,230 + +0.8
4,973,231 - -2.0
4,973,233 + +1.3
4,973,233 + +0.5
4,973,233 + -0.3
4,973,233 + -0.4
4,973,233 + +1.0
4,973,234 - +0.5
4,973,234 - +0.5
4,973,234 - -0.9
4,973,277 + +0.3
4,973,277 + +0.4
4,973,278 - -2.2
4,973,278 - -1.8
4,973,278 - -0.2
4,973,503 + -1.2
4,973,504 - +0.4
4,973,504 - +0.1
4,973,741 + AO353_22715 0.14 -1.8
4,974,009 + AO353_22715 0.22 +1.1
4,974,056 + AO353_22715 0.24 +0.3
4,974,056 + AO353_22715 0.24 -1.2
4,974,057 - AO353_22715 0.24 -0.6
4,974,057 - AO353_22715 0.24 +0.1
4,974,134 - AO353_22715 0.26 -2.4
4,974,249 + AO353_22715 0.30 -0.2
4,974,249 + AO353_22715 0.30 -2.2
4,974,249 + AO353_22715 0.30 -0.2
4,974,249 + AO353_22715 0.30 -0.5
4,974,250 - AO353_22715 0.30 +0.8
4,974,250 - AO353_22715 0.30 -0.2
4,974,250 - AO353_22715 0.30 +0.4
4,974,250 - AO353_22715 0.30 +1.3

Or see this region's nucleotide sequence