Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21975

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21970 and AO353_21975 are separated by 199 nucleotidesAO353_21975 and AO353_21980 overlap by 17 nucleotidesAO353_21980 and AO353_21985 are separated by 11 nucleotides AO353_21970: AO353_21970 - nitrite reductase, at 4,812,731 to 4,814,422 _21970 AO353_21975: AO353_21975 - AAA family ATPase, at 4,814,622 to 4,815,425 _21975 AO353_21980: AO353_21980 - cytochrome C oxidase, at 4,815,409 to 4,815,996 _21980 AO353_21985: AO353_21985 - hypothetical protein, at 4,816,008 to 4,816,265 _21985 Position (kb) 4814 4815 4816Strain fitness (log2 ratio) -2 -1 0 1 2at 4813.629 kb on + strand, within AO353_21970at 4813.630 kb on - strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strandat 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.807 kb on + strand, within AO353_21970at 4813.807 kb on + strand, within AO353_21970at 4813.808 kb on - strand, within AO353_21970at 4813.828 kb on - strand, within AO353_21970at 4813.922 kb on + strand, within AO353_21970at 4813.922 kb on + strand, within AO353_21970at 4813.923 kb on - strand, within AO353_21970at 4813.923 kb on - strand, within AO353_21970at 4813.974 kb on - strand, within AO353_21970at 4813.974 kb on - strand, within AO353_21970at 4814.118 kb on + strand, within AO353_21970at 4814.118 kb on + strand, within AO353_21970at 4814.118 kb on + strand, within AO353_21970at 4814.118 kb on + strand, within AO353_21970at 4814.118 kb on + strand, within AO353_21970at 4814.119 kb on - strand, within AO353_21970at 4814.119 kb on - strand, within AO353_21970at 4814.119 kb on - strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.123 kb on - strand, within AO353_21970at 4814.123 kb on - strand, within AO353_21970at 4814.123 kb on - strand, within AO353_21970at 4814.123 kb on - strand, within AO353_21970at 4814.139 kb on + strand, within AO353_21970at 4814.235 kb on + strand, within AO353_21970at 4814.235 kb on + strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.407 kb on + strandat 4814.407 kb on + strandat 4814.408 kb on - strandat 4814.486 kb on + strandat 4814.486 kb on + strandat 4814.502 kb on + strandat 4814.502 kb on + strandat 4814.503 kb on - strandat 4814.583 kb on + strandat 4814.583 kb on + strandat 4814.584 kb on - strandat 4814.664 kb on + strandat 4814.664 kb on + strandat 4814.665 kb on - strandat 4814.665 kb on - strandat 4814.679 kb on - strandat 4814.802 kb on + strand, within AO353_21975at 4814.827 kb on + strand, within AO353_21975at 4814.827 kb on + strand, within AO353_21975at 4814.827 kb on + strand, within AO353_21975at 4814.828 kb on - strand, within AO353_21975at 4814.828 kb on - strand, within AO353_21975at 4814.828 kb on - strand, within AO353_21975at 4814.921 kb on + strand, within AO353_21975at 4814.921 kb on + strand, within AO353_21975at 4814.921 kb on + strand, within AO353_21975at 4814.922 kb on - strand, within AO353_21975at 4814.922 kb on - strand, within AO353_21975at 4814.929 kb on - strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.067 kb on - strand, within AO353_21975at 4815.067 kb on - strand, within AO353_21975at 4815.067 kb on - strand, within AO353_21975at 4815.580 kb on + strand, within AO353_21980at 4815.580 kb on + strand, within AO353_21980at 4815.580 kb on + strand, within AO353_21980at 4815.581 kb on - strand, within AO353_21980at 4815.581 kb on - strand, within AO353_21980at 4815.581 kb on - strand, within AO353_21980at 4815.581 kb on - strand, within AO353_21980at 4815.581 kb on - strand, within AO353_21980at 4815.721 kb on + strand, within AO353_21980at 4815.721 kb on + strand, within AO353_21980at 4815.721 kb on + strand, within AO353_21980at 4815.721 kb on + strand, within AO353_21980at 4815.722 kb on - strand, within AO353_21980at 4815.722 kb on - strand, within AO353_21980at 4815.722 kb on - strand, within AO353_21980at 4815.739 kb on - strandat 4815.745 kb on + strand, within AO353_21980at 4815.746 kb on - strand, within AO353_21980at 4815.802 kb on + strand, within AO353_21980at 4815.802 kb on + strand, within AO353_21980at 4815.803 kb on - strand, within AO353_21980at 4815.836 kb on + strand, within AO353_21980at 4815.836 kb on + strand, within AO353_21980at 4815.836 kb on + strand, within AO353_21980at 4815.836 kb on + strand, within AO353_21980at 4815.836 kb on + strand, within AO353_21980at 4815.836 kb on + strand, within AO353_21980at 4815.836 kb on + strand, within AO353_21980at 4815.836 kb on + strand, within AO353_21980at 4815.837 kb on - strand, within AO353_21980at 4815.837 kb on - strand, within AO353_21980at 4815.837 kb on - strand, within AO353_21980at 4815.837 kb on - strand, within AO353_21980at 4815.837 kb on - strand, within AO353_21980at 4815.837 kb on - strand, within AO353_21980at 4815.837 kb on - strand, within AO353_21980at 4815.837 kb on - strand, within AO353_21980at 4815.837 kb on - strand, within AO353_21980at 4815.892 kb on + strand, within AO353_21980at 4815.892 kb on + strand, within AO353_21980at 4815.892 kb on + strand, within AO353_21980at 4815.892 kb on + strand, within AO353_21980at 4815.892 kb on + strand, within AO353_21980at 4815.892 kb on + strand, within AO353_21980at 4815.892 kb on + strand, within AO353_21980at 4815.892 kb on + strand, within AO353_21980at 4815.893 kb on - strand, within AO353_21980at 4815.893 kb on - strand, within AO353_21980at 4815.893 kb on - strand, within AO353_21980at 4815.893 kb on - strand, within AO353_21980at 4815.934 kb on + strand, within AO353_21980at 4815.934 kb on + strand, within AO353_21980at 4815.935 kb on - strand, within AO353_21980at 4815.935 kb on - strand, within AO353_21980at 4815.935 kb on - strand, within AO353_21980at 4815.935 kb on - strand, within AO353_21980at 4815.982 kb on + strandat 4815.982 kb on + strandat 4815.983 kb on - strandat 4815.983 kb on - strandat 4815.983 kb on - strandat 4815.983 kb on - strandat 4816.007 kb on + strandat 4816.007 kb on + strandat 4816.007 kb on + strandat 4816.007 kb on + strandat 4816.008 kb on - strandat 4816.008 kb on - strandat 4816.057 kb on + strand, within AO353_21985at 4816.263 kb on + strandat 4816.333 kb on + strandat 4816.333 kb on + strandat 4816.334 kb on - strandat 4816.341 kb on + strandat 4816.341 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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4,813,629 + AO353_21970 0.53 +2.2
4,813,630 - AO353_21970 0.53 -0.8
4,813,647 + AO353_21970 0.54 -1.2
4,813,647 + AO353_21970 0.54 -1.2
4,813,647 + AO353_21970 0.54 -0.7
4,813,647 + AO353_21970 0.54 -0.6
4,813,647 + AO353_21970 0.54 -1.2
4,813,647 + AO353_21970 0.54 +1.6
4,813,648 - AO353_21970 0.54 -2.5
4,813,648 - AO353_21970 0.54 -0.2
4,813,648 - -0.2
4,813,648 - AO353_21970 0.54 -0.9
4,813,648 - AO353_21970 0.54 -0.3
4,813,648 - AO353_21970 0.54 +1.3
4,813,648 - AO353_21970 0.54 +0.2
4,813,648 - AO353_21970 0.54 +0.8
4,813,648 - AO353_21970 0.54 -2.2
4,813,648 - AO353_21970 0.54 -0.2
4,813,648 - AO353_21970 0.54 -0.4
4,813,648 - AO353_21970 0.54 -1.3
4,813,807 + AO353_21970 0.64 -1.2
4,813,807 + AO353_21970 0.64 +1.5
4,813,808 - AO353_21970 0.64 -1.2
4,813,828 - AO353_21970 0.65 +0.1
4,813,922 + AO353_21970 0.70 +0.3
4,813,922 + AO353_21970 0.70 -1.6
4,813,923 - AO353_21970 0.70 +1.4
4,813,923 - AO353_21970 0.70 -2.2
4,813,974 - AO353_21970 0.73 +0.7
4,813,974 - AO353_21970 0.73 -1.7
4,814,118 + AO353_21970 0.82 +1.4
4,814,118 + AO353_21970 0.82 -0.2
4,814,118 + AO353_21970 0.82 -1.7
4,814,118 + AO353_21970 0.82 -0.2
4,814,118 + AO353_21970 0.82 -0.2
4,814,119 - AO353_21970 0.82 +0.5
4,814,119 - AO353_21970 0.82 -0.4
4,814,119 - AO353_21970 0.82 -1.4
4,814,122 + AO353_21970 0.82 -0.3
4,814,122 + AO353_21970 0.82 +0.8
4,814,122 + AO353_21970 0.82 -1.2
4,814,122 + AO353_21970 0.82 +2.4
4,814,122 + AO353_21970 0.82 +0.9
4,814,122 + AO353_21970 0.82 -0.2
4,814,122 + AO353_21970 0.82 -0.2
4,814,122 + AO353_21970 0.82 -0.2
4,814,122 + AO353_21970 0.82 -0.6
4,814,122 + AO353_21970 0.82 -0.2
4,814,122 + AO353_21970 0.82 -0.0
4,814,123 - AO353_21970 0.82 +1.4
4,814,123 - AO353_21970 0.82 +0.4
4,814,123 - AO353_21970 0.82 -1.0
4,814,123 - AO353_21970 0.82 -1.5
4,814,139 + AO353_21970 0.83 -1.5
4,814,235 + AO353_21970 0.89 +0.0
4,814,235 + AO353_21970 0.89 +0.1
4,814,236 - AO353_21970 0.89 +1.2
4,814,236 - AO353_21970 0.89 +1.4
4,814,236 - AO353_21970 0.89 -1.7
4,814,236 - AO353_21970 0.89 -0.2
4,814,236 - AO353_21970 0.89 -1.0
4,814,236 - AO353_21970 0.89 -0.2
4,814,407 + +2.2
4,814,407 + +0.6
4,814,408 - -0.2
4,814,486 + +1.4
4,814,486 + -0.7
4,814,502 + +2.2
4,814,502 + -0.2
4,814,503 - -0.2
4,814,583 + +0.2
4,814,583 + -1.7
4,814,584 - +0.4
4,814,664 + -0.6
4,814,664 + +0.0
4,814,665 - -0.7
4,814,665 - -0.4
4,814,679 - -2.3
4,814,802 + AO353_21975 0.22 +0.6
4,814,827 + AO353_21975 0.25 +0.8
4,814,827 + AO353_21975 0.25 +0.3
4,814,827 + AO353_21975 0.25 +1.4
4,814,828 - AO353_21975 0.26 +0.4
4,814,828 - AO353_21975 0.26 +0.6
4,814,828 - AO353_21975 0.26 +0.4
4,814,921 + AO353_21975 0.37 -2.5
4,814,921 + AO353_21975 0.37 +0.2
4,814,921 + AO353_21975 0.37 -1.2
4,814,922 - AO353_21975 0.37 +0.3
4,814,922 - AO353_21975 0.37 -2.0
4,814,929 - AO353_21975 0.38 -0.7
4,815,066 + AO353_21975 0.55 -1.5
4,815,066 + AO353_21975 0.55 -0.2
4,815,066 + AO353_21975 0.55 -0.2
4,815,066 + AO353_21975 0.55 +1.4
4,815,066 + AO353_21975 0.55 +1.3
4,815,066 + AO353_21975 0.55 +1.4
4,815,067 - AO353_21975 0.55 +0.4
4,815,067 - AO353_21975 0.55 +0.4
4,815,067 - AO353_21975 0.55 +0.8
4,815,580 + AO353_21980 0.29 -0.4
4,815,580 + AO353_21980 0.29 +1.3
4,815,580 + AO353_21980 0.29 -0.4
4,815,581 - AO353_21980 0.29 -1.0
4,815,581 - AO353_21980 0.29 +0.2
4,815,581 - AO353_21980 0.29 +1.4
4,815,581 - AO353_21980 0.29 +0.8
4,815,581 - AO353_21980 0.29 -1.2
4,815,721 + AO353_21980 0.53 -2.7
4,815,721 + AO353_21980 0.53 -0.4
4,815,721 + AO353_21980 0.53 +0.8
4,815,721 + AO353_21980 0.53 +0.3
4,815,722 - AO353_21980 0.53 -1.7
4,815,722 - AO353_21980 0.53 -0.7
4,815,722 - AO353_21980 0.53 -1.2
4,815,739 - +1.4
4,815,745 + AO353_21980 0.57 -1.9
4,815,746 - AO353_21980 0.57 -1.0
4,815,802 + AO353_21980 0.67 +0.3
4,815,802 + AO353_21980 0.67 -0.2
4,815,803 - AO353_21980 0.67 +2.2
4,815,836 + AO353_21980 0.73 -1.2
4,815,836 + AO353_21980 0.73 -1.2
4,815,836 + AO353_21980 0.73 -0.7
4,815,836 + AO353_21980 0.73 +1.0
4,815,836 + AO353_21980 0.73 +0.8
4,815,836 + AO353_21980 0.73 -1.2
4,815,836 + AO353_21980 0.73 +0.3
4,815,836 + AO353_21980 0.73 +1.4
4,815,837 - AO353_21980 0.73 -1.2
4,815,837 - AO353_21980 0.73 +2.4
4,815,837 - AO353_21980 0.73 -1.7
4,815,837 - AO353_21980 0.73 -0.9
4,815,837 - AO353_21980 0.73 +0.8
4,815,837 - AO353_21980 0.73 -0.2
4,815,837 - AO353_21980 0.73 -0.6
4,815,837 - AO353_21980 0.73 -1.1
4,815,837 - AO353_21980 0.73 -0.2
4,815,892 + AO353_21980 0.82 -1.2
4,815,892 + AO353_21980 0.82 +0.1
4,815,892 + AO353_21980 0.82 +1.8
4,815,892 + AO353_21980 0.82 +2.2
4,815,892 + AO353_21980 0.82 -0.2
4,815,892 + AO353_21980 0.82 -1.0
4,815,892 + AO353_21980 0.82 +1.6
4,815,892 + AO353_21980 0.82 +1.2
4,815,893 - AO353_21980 0.82 +0.3
4,815,893 - AO353_21980 0.82 -2.5
4,815,893 - AO353_21980 0.82 -0.2
4,815,893 - AO353_21980 0.82 -1.2
4,815,934 + AO353_21980 0.89 +0.2
4,815,934 + AO353_21980 0.89 -1.7
4,815,935 - AO353_21980 0.89 +0.4
4,815,935 - AO353_21980 0.89 +0.6
4,815,935 - AO353_21980 0.89 -0.5
4,815,935 - AO353_21980 0.89 -0.2
4,815,982 + +0.7
4,815,982 + -0.7
4,815,983 - -2.2
4,815,983 - -1.7
4,815,983 - +1.4
4,815,983 - +2.4
4,816,007 + -0.5
4,816,007 + -0.3
4,816,007 + -0.7
4,816,007 + +0.8
4,816,008 - +1.8
4,816,008 - -0.2
4,816,057 + AO353_21985 0.19 +0.3
4,816,263 + +1.7
4,816,333 + -1.4
4,816,333 + +0.6
4,816,334 - -1.9
4,816,341 + +0.8
4,816,341 + -0.2

Or see this region's nucleotide sequence