Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21760

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21755 and AO353_21760 are separated by 144 nucleotidesAO353_21760 and AO353_21765 are separated by 19 nucleotides AO353_21755: AO353_21755 - histidine kinase, at 4,767,485 to 4,770,022 _21755 AO353_21760: AO353_21760 - twitching motility protein PilT, at 4,770,167 to 4,771,285 _21760 AO353_21765: AO353_21765 - acetoacetyl-CoA synthetase, at 4,771,305 to 4,773,260 _21765 Position (kb) 4770 4771 4772Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4769.209 kb on - strand, within AO353_21755at 4769.209 kb on - strand, within AO353_21755at 4769.277 kb on + strand, within AO353_21755at 4769.278 kb on - strand, within AO353_21755at 4769.278 kb on - strand, within AO353_21755at 4769.355 kb on + strand, within AO353_21755at 4769.356 kb on - strand, within AO353_21755at 4769.428 kb on + strand, within AO353_21755at 4769.428 kb on + strand, within AO353_21755at 4769.640 kb on + strand, within AO353_21755at 4769.641 kb on - strand, within AO353_21755at 4769.707 kb on - strand, within AO353_21755at 4769.707 kb on - strand, within AO353_21755at 4769.726 kb on + strand, within AO353_21755at 4769.726 kb on + strand, within AO353_21755at 4769.738 kb on - strand, within AO353_21755at 4769.739 kb on + strand, within AO353_21755at 4769.739 kb on + strand, within AO353_21755at 4769.739 kb on + strand, within AO353_21755at 4769.739 kb on + strand, within AO353_21755at 4769.739 kb on + strand, within AO353_21755at 4769.739 kb on + strand, within AO353_21755at 4769.739 kb on + strand, within AO353_21755at 4769.740 kb on - strand, within AO353_21755at 4769.740 kb on - strand, within AO353_21755at 4769.740 kb on - strand, within AO353_21755at 4769.740 kb on - strand, within AO353_21755at 4769.740 kb on - strand, within AO353_21755at 4769.844 kb on + strandat 4769.844 kb on + strandat 4769.844 kb on + strandat 4769.845 kb on - strandat 4769.845 kb on - strandat 4770.049 kb on + strandat 4770.049 kb on + strandat 4770.050 kb on - strandat 4770.050 kb on - strandat 4770.050 kb on - strandat 4770.050 kb on - strandat 4770.050 kb on - strandat 4770.053 kb on + strandat 4770.053 kb on + strandat 4770.053 kb on + strandat 4770.054 kb on - strandat 4770.054 kb on - strandat 4770.071 kb on + strandat 4770.071 kb on + strandat 4770.071 kb on + strandat 4770.071 kb on + strandat 4770.071 kb on + strandat 4770.071 kb on + strandat 4770.071 kb on + strandat 4770.071 kb on + strandat 4770.071 kb on + strandat 4770.071 kb on + strandat 4770.072 kb on - strandat 4770.072 kb on - strandat 4770.072 kb on - strandat 4770.072 kb on - strandat 4770.072 kb on - strandat 4770.072 kb on - strandat 4770.072 kb on - strandat 4770.074 kb on + strandat 4770.074 kb on + strandat 4770.074 kb on + strandat 4770.075 kb on - strandat 4770.075 kb on - strandat 4770.075 kb on - strandat 4770.075 kb on - strandat 4770.075 kb on - strandat 4770.075 kb on - strandat 4770.186 kb on + strandat 4770.187 kb on - strandat 4770.187 kb on - strandat 4770.187 kb on - strandat 4770.187 kb on - strandat 4770.571 kb on + strand, within AO353_21760at 4770.656 kb on + strand, within AO353_21760at 4770.656 kb on + strand, within AO353_21760at 4770.656 kb on + strand, within AO353_21760at 4770.656 kb on + strand, within AO353_21760at 4770.656 kb on + strand, within AO353_21760at 4770.656 kb on + strand, within AO353_21760at 4770.657 kb on - strand, within AO353_21760at 4770.657 kb on - strand, within AO353_21760at 4770.657 kb on - strand, within AO353_21760at 4770.657 kb on - strand, within AO353_21760at 4770.657 kb on - strand, within AO353_21760at 4770.657 kb on - strand, within AO353_21760at 4770.658 kb on + strand, within AO353_21760at 4770.658 kb on + strand, within AO353_21760at 4770.658 kb on + strand, within AO353_21760at 4770.659 kb on - strand, within AO353_21760at 4770.659 kb on - strand, within AO353_21760at 4770.659 kb on - strand, within AO353_21760at 4770.659 kb on - strand, within AO353_21760at 4770.664 kb on + strand, within AO353_21760at 4771.045 kb on - strand, within AO353_21760at 4771.117 kb on + strand, within AO353_21760at 4771.192 kb on + strandat 4771.306 kb on + strandat 4771.371 kb on - strandat 4771.443 kb on + strandat 4771.443 kb on + strandat 4771.444 kb on - strandat 4771.444 kb on - strandat 4771.444 kb on - strandat 4771.444 kb on - strandat 4771.444 kb on - strandat 4771.445 kb on + strandat 4771.446 kb on - strandat 4771.491 kb on - strandat 4771.621 kb on - strand, within AO353_21765at 4771.648 kb on + strandat 4771.648 kb on + strand, within AO353_21765at 4771.649 kb on - strand, within AO353_21765at 4771.649 kb on - strand, within AO353_21765at 4771.671 kb on + strand, within AO353_21765at 4771.689 kb on + strand, within AO353_21765at 4771.690 kb on - strand, within AO353_21765at 4771.690 kb on - strand, within AO353_21765at 4771.745 kb on - strand, within AO353_21765at 4771.745 kb on - strand, within AO353_21765at 4771.745 kb on - strand, within AO353_21765at 4771.783 kb on + strand, within AO353_21765at 4771.784 kb on - strand, within AO353_21765at 4772.053 kb on + strand, within AO353_21765at 4772.053 kb on + strand, within AO353_21765at 4772.054 kb on - strand, within AO353_21765at 4772.054 kb on - strand, within AO353_21765at 4772.054 kb on - strand, within AO353_21765at 4772.059 kb on + strand, within AO353_21765at 4772.059 kb on + strand, within AO353_21765at 4772.059 kb on + strand, within AO353_21765at 4772.255 kb on - strand, within AO353_21765at 4772.255 kb on - strand, within AO353_21765

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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4,769,209 - AO353_21755 0.68 +0.4
4,769,209 - AO353_21755 0.68 -0.7
4,769,277 + AO353_21755 0.71 -0.1
4,769,278 - AO353_21755 0.71 -1.5
4,769,278 - AO353_21755 0.71 +0.4
4,769,355 + AO353_21755 0.74 +0.7
4,769,356 - AO353_21755 0.74 +0.9
4,769,428 + AO353_21755 0.77 -0.5
4,769,428 + AO353_21755 0.77 -0.4
4,769,640 + AO353_21755 0.85 -1.0
4,769,641 - AO353_21755 0.85 +0.7
4,769,707 - AO353_21755 0.88 +0.2
4,769,707 - AO353_21755 0.88 +1.4
4,769,726 + AO353_21755 0.88 +0.9
4,769,726 + AO353_21755 0.88 -0.0
4,769,738 - AO353_21755 0.89 +1.6
4,769,739 + AO353_21755 0.89 +0.1
4,769,739 + AO353_21755 0.89 -0.1
4,769,739 + AO353_21755 0.89 -0.6
4,769,739 + AO353_21755 0.89 -1.9
4,769,739 + AO353_21755 0.89 -1.3
4,769,739 + AO353_21755 0.89 +0.0
4,769,739 + AO353_21755 0.89 +0.2
4,769,740 - AO353_21755 0.89 +0.5
4,769,740 - AO353_21755 0.89 -1.4
4,769,740 - AO353_21755 0.89 -0.1
4,769,740 - AO353_21755 0.89 +0.4
4,769,740 - AO353_21755 0.89 +0.3
4,769,844 + +0.1
4,769,844 + +0.4
4,769,844 + +2.0
4,769,845 - -0.1
4,769,845 - +0.7
4,770,049 + +0.6
4,770,049 + +1.1
4,770,050 - +1.2
4,770,050 - +0.3
4,770,050 - -1.1
4,770,050 - +0.4
4,770,050 - +0.5
4,770,053 + +1.3
4,770,053 + -0.2
4,770,053 + +1.9
4,770,054 - +1.1
4,770,054 - +0.8
4,770,071 + -0.9
4,770,071 + -1.1
4,770,071 + -0.4
4,770,071 + -1.1
4,770,071 + -2.5
4,770,071 + -0.4
4,770,071 + -0.1
4,770,071 + -1.1
4,770,071 + -0.1
4,770,071 + -0.6
4,770,072 - -0.6
4,770,072 - -0.7
4,770,072 - -0.1
4,770,072 - -1.1
4,770,072 - -0.6
4,770,072 - +0.1
4,770,072 - -0.1
4,770,074 + -1.4
4,770,074 + +0.1
4,770,074 + +0.1
4,770,075 - +0.4
4,770,075 - -1.1
4,770,075 - -0.6
4,770,075 - -0.3
4,770,075 - -0.1
4,770,075 - -1.5
4,770,186 + -0.1
4,770,187 - -0.6
4,770,187 - -1.1
4,770,187 - +0.9
4,770,187 - +1.5
4,770,571 + AO353_21760 0.36 -1.5
4,770,656 + AO353_21760 0.44 -1.4
4,770,656 + AO353_21760 0.44 -0.6
4,770,656 + AO353_21760 0.44 -0.9
4,770,656 + AO353_21760 0.44 -0.7
4,770,656 + AO353_21760 0.44 -0.1
4,770,656 + AO353_21760 0.44 -1.6
4,770,657 - AO353_21760 0.44 -1.4
4,770,657 - AO353_21760 0.44 +1.9
4,770,657 - AO353_21760 0.44 -0.1
4,770,657 - AO353_21760 0.44 -1.5
4,770,657 - AO353_21760 0.44 -1.1
4,770,657 - AO353_21760 0.44 -2.1
4,770,658 + AO353_21760 0.44 +0.2
4,770,658 + AO353_21760 0.44 -0.8
4,770,658 + AO353_21760 0.44 -2.5
4,770,659 - AO353_21760 0.44 +0.9
4,770,659 - AO353_21760 0.44 +0.4
4,770,659 - AO353_21760 0.44 +0.9
4,770,659 - AO353_21760 0.44 +0.9
4,770,664 + AO353_21760 0.44 +2.4
4,771,045 - AO353_21760 0.78 -0.8
4,771,117 + AO353_21760 0.85 -1.3
4,771,192 + +1.2
4,771,306 + -1.7
4,771,371 - +0.9
4,771,443 + -0.7
4,771,443 + +0.2
4,771,444 - -0.1
4,771,444 - -1.1
4,771,444 - -0.3
4,771,444 - -2.1
4,771,444 - +0.6
4,771,445 + -1.1
4,771,446 - +1.1
4,771,491 - -1.1
4,771,621 - AO353_21765 0.16 -0.5
4,771,648 + -1.1
4,771,648 + AO353_21765 0.18 +1.2
4,771,649 - AO353_21765 0.18 -0.4
4,771,649 - AO353_21765 0.18 -0.1
4,771,671 + AO353_21765 0.19 +1.4
4,771,689 + AO353_21765 0.20 -1.4
4,771,690 - AO353_21765 0.20 +0.9
4,771,690 - AO353_21765 0.20 -0.7
4,771,745 - AO353_21765 0.22 +1.4
4,771,745 - AO353_21765 0.22 -1.0
4,771,745 - AO353_21765 0.22 -0.5
4,771,783 + AO353_21765 0.24 -1.7
4,771,784 - AO353_21765 0.24 +0.0
4,772,053 + AO353_21765 0.38 -0.7
4,772,053 + AO353_21765 0.38 -0.1
4,772,054 - AO353_21765 0.38 +0.0
4,772,054 - AO353_21765 0.38 +0.6
4,772,054 - AO353_21765 0.38 +0.4
4,772,059 + AO353_21765 0.39 -0.3
4,772,059 + AO353_21765 0.39 -3.1
4,772,059 + AO353_21765 0.39 -1.7
4,772,255 - AO353_21765 0.49 +0.7
4,772,255 - AO353_21765 0.49 -1.6

Or see this region's nucleotide sequence