Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21530

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21525 and AO353_21530 are separated by 2 nucleotidesAO353_21530 and AO353_21535 overlap by 37 nucleotides AO353_21525: AO353_21525 - ClpV1 family T6SS ATPase, at 4,710,666 to 4,713,215 _21525 AO353_21530: AO353_21530 - type VI secretion protein, at 4,713,218 to 4,714,243 _21530 AO353_21535: AO353_21535 - type VI secretion system protein ImpG, at 4,714,207 to 4,715,997 _21535 Position (kb) 4713 4714 4715Strain fitness (log2 ratio) -2 -1 0 1 2at 4712.445 kb on + strand, within AO353_21525at 4712.482 kb on - strand, within AO353_21525at 4712.685 kb on + strand, within AO353_21525at 4712.686 kb on - strand, within AO353_21525at 4712.686 kb on - strand, within AO353_21525at 4712.790 kb on + strand, within AO353_21525at 4712.874 kb on + strand, within AO353_21525at 4713.121 kb on + strandat 4713.121 kb on + strandat 4713.121 kb on + strandat 4713.121 kb on + strandat 4713.121 kb on + strandat 4713.122 kb on - strandat 4713.122 kb on - strandat 4713.122 kb on - strandat 4713.122 kb on - strandat 4713.390 kb on + strand, within AO353_21530at 4713.391 kb on - strand, within AO353_21530at 4713.391 kb on - strand, within AO353_21530at 4713.391 kb on - strand, within AO353_21530at 4713.609 kb on + strand, within AO353_21530at 4713.610 kb on - strand, within AO353_21530at 4713.610 kb on - strand, within AO353_21530at 4713.850 kb on - strand, within AO353_21530at 4713.903 kb on + strand, within AO353_21530at 4713.942 kb on + strand, within AO353_21530at 4713.943 kb on - strand, within AO353_21530at 4714.304 kb on + strandat 4714.304 kb on + strandat 4714.304 kb on + strandat 4714.304 kb on + strandat 4714.304 kb on + strandat 4714.304 kb on + strandat 4714.304 kb on + strandat 4714.304 kb on + strandat 4714.305 kb on - strandat 4714.509 kb on + strand, within AO353_21535at 4714.509 kb on + strand, within AO353_21535at 4714.650 kb on + strandat 4714.872 kb on - strand, within AO353_21535at 4714.904 kb on + strand, within AO353_21535at 4714.904 kb on + strand, within AO353_21535at 4714.905 kb on - strand, within AO353_21535at 4714.905 kb on - strand, within AO353_21535at 4714.905 kb on - strand, within AO353_21535at 4714.907 kb on + strand, within AO353_21535at 4714.907 kb on + strand, within AO353_21535at 4714.907 kb on + strand, within AO353_21535at 4714.907 kb on + strand, within AO353_21535at 4714.907 kb on + strand, within AO353_21535at 4714.908 kb on - strand, within AO353_21535at 4714.924 kb on + strand, within AO353_21535at 4714.925 kb on - strand, within AO353_21535at 4715.104 kb on + strand, within AO353_21535at 4715.104 kb on + strand, within AO353_21535at 4715.104 kb on + strand, within AO353_21535at 4715.104 kb on + strand, within AO353_21535at 4715.105 kb on - strand, within AO353_21535at 4715.105 kb on - strand, within AO353_21535at 4715.105 kb on - strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.145 kb on - strand, within AO353_21535at 4715.145 kb on - strand, within AO353_21535at 4715.145 kb on - strand, within AO353_21535at 4715.145 kb on - strand, within AO353_21535at 4715.145 kb on - strand, within AO353_21535at 4715.150 kb on + strand, within AO353_21535at 4715.150 kb on + strand, within AO353_21535at 4715.151 kb on - strand, within AO353_21535at 4715.151 kb on - strand, within AO353_21535at 4715.225 kb on + strand, within AO353_21535at 4715.225 kb on + strand, within AO353_21535at 4715.226 kb on - strand, within AO353_21535

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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4,712,445 + AO353_21525 0.70 +0.1
4,712,482 - AO353_21525 0.71 -0.4
4,712,685 + AO353_21525 0.79 -0.6
4,712,686 - AO353_21525 0.79 +0.9
4,712,686 - AO353_21525 0.79 +1.3
4,712,790 + AO353_21525 0.83 +0.3
4,712,874 + AO353_21525 0.87 -0.7
4,713,121 + +1.5
4,713,121 + +1.3
4,713,121 + -1.1
4,713,121 + -1.9
4,713,121 + +1.5
4,713,122 - +1.9
4,713,122 - +2.5
4,713,122 - +1.3
4,713,122 - +1.5
4,713,390 + AO353_21530 0.17 +2.5
4,713,391 - AO353_21530 0.17 -1.7
4,713,391 - AO353_21530 0.17 -0.5
4,713,391 - AO353_21530 0.17 -0.9
4,713,609 + AO353_21530 0.38 -0.7
4,713,610 - AO353_21530 0.38 -0.6
4,713,610 - AO353_21530 0.38 -1.1
4,713,850 - AO353_21530 0.62 -0.1
4,713,903 + AO353_21530 0.67 -1.7
4,713,942 + AO353_21530 0.71 -1.6
4,713,943 - AO353_21530 0.71 +0.2
4,714,304 + +0.9
4,714,304 + +0.2
4,714,304 + +1.5
4,714,304 + +0.9
4,714,304 + +0.3
4,714,304 + -1.1
4,714,304 + -0.1
4,714,304 + +0.2
4,714,305 - +0.9
4,714,509 + AO353_21535 0.17 -0.4
4,714,509 + AO353_21535 0.17 +1.1
4,714,650 + -0.9
4,714,872 - AO353_21535 0.37 +1.2
4,714,904 + AO353_21535 0.39 +0.1
4,714,904 + AO353_21535 0.39 -2.3
4,714,905 - AO353_21535 0.39 +0.3
4,714,905 - AO353_21535 0.39 +0.9
4,714,905 - AO353_21535 0.39 +0.6
4,714,907 + AO353_21535 0.39 -1.4
4,714,907 + AO353_21535 0.39 +1.2
4,714,907 + AO353_21535 0.39 -0.4
4,714,907 + AO353_21535 0.39 +1.0
4,714,907 + AO353_21535 0.39 +0.1
4,714,908 - AO353_21535 0.39 +0.2
4,714,924 + AO353_21535 0.40 -1.1
4,714,925 - AO353_21535 0.40 +0.9
4,715,104 + AO353_21535 0.50 -1.7
4,715,104 + AO353_21535 0.50 -0.3
4,715,104 + AO353_21535 0.50 +0.0
4,715,104 + AO353_21535 0.50 -0.1
4,715,105 - AO353_21535 0.50 +0.5
4,715,105 - AO353_21535 0.50 -0.1
4,715,105 - AO353_21535 0.50 -2.0
4,715,144 + AO353_21535 0.52 -0.7
4,715,144 + AO353_21535 0.52 +1.5
4,715,144 + AO353_21535 0.52 +1.5
4,715,144 + AO353_21535 0.52 +1.5
4,715,144 + AO353_21535 0.52 -0.9
4,715,144 + AO353_21535 0.52 -0.8
4,715,145 - AO353_21535 0.52 +0.5
4,715,145 - AO353_21535 0.52 -0.8
4,715,145 - AO353_21535 0.52 -1.4
4,715,145 - AO353_21535 0.52 -0.5
4,715,145 - AO353_21535 0.52 +1.1
4,715,150 + AO353_21535 0.53 -1.2
4,715,150 + AO353_21535 0.53 -0.1
4,715,151 - AO353_21535 0.53 -0.4
4,715,151 - AO353_21535 0.53 +0.6
4,715,225 + AO353_21535 0.57 +0.0
4,715,225 + AO353_21535 0.57 +0.5
4,715,226 - AO353_21535 0.57 +0.5

Or see this region's nucleotide sequence