Experiment: Ionizing radiation, 126.196 Gy,
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21525 and AO353_21530 are separated by 2 nucleotides AO353_21530 and AO353_21535 overlap by 37 nucleotides
AO353_21525: AO353_21525 - ClpV1 family T6SS ATPase, at 4,710,666 to 4,713,215
_21525
AO353_21530: AO353_21530 - type VI secretion protein, at 4,713,218 to 4,714,243
_21530
AO353_21535: AO353_21535 - type VI secretion system protein ImpG, at 4,714,207 to 4,715,997
_21535
Position (kb)
4713
4714
4715 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4712.445 kb on + strand, within AO353_21525 at 4712.482 kb on - strand, within AO353_21525 at 4712.685 kb on + strand, within AO353_21525 at 4712.686 kb on - strand, within AO353_21525 at 4712.686 kb on - strand, within AO353_21525 at 4712.790 kb on + strand, within AO353_21525 at 4712.874 kb on + strand, within AO353_21525 at 4713.121 kb on + strand at 4713.121 kb on + strand at 4713.121 kb on + strand at 4713.121 kb on + strand at 4713.121 kb on + strand at 4713.122 kb on - strand at 4713.122 kb on - strand at 4713.122 kb on - strand at 4713.122 kb on - strand at 4713.390 kb on + strand, within AO353_21530 at 4713.391 kb on - strand, within AO353_21530 at 4713.391 kb on - strand, within AO353_21530 at 4713.391 kb on - strand, within AO353_21530 at 4713.609 kb on + strand, within AO353_21530 at 4713.610 kb on - strand, within AO353_21530 at 4713.610 kb on - strand, within AO353_21530 at 4713.850 kb on - strand, within AO353_21530 at 4713.903 kb on + strand, within AO353_21530 at 4713.942 kb on + strand, within AO353_21530 at 4713.943 kb on - strand, within AO353_21530 at 4714.304 kb on + strand at 4714.304 kb on + strand at 4714.304 kb on + strand at 4714.304 kb on + strand at 4714.304 kb on + strand at 4714.304 kb on + strand at 4714.304 kb on + strand at 4714.304 kb on + strand at 4714.305 kb on - strand at 4714.509 kb on + strand, within AO353_21535 at 4714.509 kb on + strand, within AO353_21535 at 4714.650 kb on + strand at 4714.872 kb on - strand, within AO353_21535 at 4714.904 kb on + strand, within AO353_21535 at 4714.904 kb on + strand, within AO353_21535 at 4714.905 kb on - strand, within AO353_21535 at 4714.905 kb on - strand, within AO353_21535 at 4714.905 kb on - strand, within AO353_21535 at 4714.907 kb on + strand, within AO353_21535 at 4714.907 kb on + strand, within AO353_21535 at 4714.907 kb on + strand, within AO353_21535 at 4714.907 kb on + strand, within AO353_21535 at 4714.907 kb on + strand, within AO353_21535 at 4714.908 kb on - strand, within AO353_21535 at 4714.924 kb on + strand, within AO353_21535 at 4714.925 kb on - strand, within AO353_21535 at 4715.104 kb on + strand, within AO353_21535 at 4715.104 kb on + strand, within AO353_21535 at 4715.104 kb on + strand, within AO353_21535 at 4715.104 kb on + strand, within AO353_21535 at 4715.105 kb on - strand, within AO353_21535 at 4715.105 kb on - strand, within AO353_21535 at 4715.105 kb on - strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.145 kb on - strand, within AO353_21535 at 4715.145 kb on - strand, within AO353_21535 at 4715.145 kb on - strand, within AO353_21535 at 4715.145 kb on - strand, within AO353_21535 at 4715.145 kb on - strand, within AO353_21535 at 4715.150 kb on + strand, within AO353_21535 at 4715.150 kb on + strand, within AO353_21535 at 4715.151 kb on - strand, within AO353_21535 at 4715.151 kb on - strand, within AO353_21535 at 4715.225 kb on + strand, within AO353_21535 at 4715.225 kb on + strand, within AO353_21535 at 4715.226 kb on - strand, within AO353_21535
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy, remove 4,712,445 + AO353_21525 0.70 +0.1 4,712,482 - AO353_21525 0.71 -0.4 4,712,685 + AO353_21525 0.79 -0.6 4,712,686 - AO353_21525 0.79 +0.9 4,712,686 - AO353_21525 0.79 +1.3 4,712,790 + AO353_21525 0.83 +0.3 4,712,874 + AO353_21525 0.87 -0.7 4,713,121 + +1.5 4,713,121 + +1.3 4,713,121 + -1.1 4,713,121 + -1.9 4,713,121 + +1.5 4,713,122 - +1.9 4,713,122 - +2.5 4,713,122 - +1.3 4,713,122 - +1.5 4,713,390 + AO353_21530 0.17 +2.5 4,713,391 - AO353_21530 0.17 -1.7 4,713,391 - AO353_21530 0.17 -0.5 4,713,391 - AO353_21530 0.17 -0.9 4,713,609 + AO353_21530 0.38 -0.7 4,713,610 - AO353_21530 0.38 -0.6 4,713,610 - AO353_21530 0.38 -1.1 4,713,850 - AO353_21530 0.62 -0.1 4,713,903 + AO353_21530 0.67 -1.7 4,713,942 + AO353_21530 0.71 -1.6 4,713,943 - AO353_21530 0.71 +0.2 4,714,304 + +0.9 4,714,304 + +0.2 4,714,304 + +1.5 4,714,304 + +0.9 4,714,304 + +0.3 4,714,304 + -1.1 4,714,304 + -0.1 4,714,304 + +0.2 4,714,305 - +0.9 4,714,509 + AO353_21535 0.17 -0.4 4,714,509 + AO353_21535 0.17 +1.1 4,714,650 + -0.9 4,714,872 - AO353_21535 0.37 +1.2 4,714,904 + AO353_21535 0.39 +0.1 4,714,904 + AO353_21535 0.39 -2.3 4,714,905 - AO353_21535 0.39 +0.3 4,714,905 - AO353_21535 0.39 +0.9 4,714,905 - AO353_21535 0.39 +0.6 4,714,907 + AO353_21535 0.39 -1.4 4,714,907 + AO353_21535 0.39 +1.2 4,714,907 + AO353_21535 0.39 -0.4 4,714,907 + AO353_21535 0.39 +1.0 4,714,907 + AO353_21535 0.39 +0.1 4,714,908 - AO353_21535 0.39 +0.2 4,714,924 + AO353_21535 0.40 -1.1 4,714,925 - AO353_21535 0.40 +0.9 4,715,104 + AO353_21535 0.50 -1.7 4,715,104 + AO353_21535 0.50 -0.3 4,715,104 + AO353_21535 0.50 +0.0 4,715,104 + AO353_21535 0.50 -0.1 4,715,105 - AO353_21535 0.50 +0.5 4,715,105 - AO353_21535 0.50 -0.1 4,715,105 - AO353_21535 0.50 -2.0 4,715,144 + AO353_21535 0.52 -0.7 4,715,144 + AO353_21535 0.52 +1.5 4,715,144 + AO353_21535 0.52 +1.5 4,715,144 + AO353_21535 0.52 +1.5 4,715,144 + AO353_21535 0.52 -0.9 4,715,144 + AO353_21535 0.52 -0.8 4,715,145 - AO353_21535 0.52 +0.5 4,715,145 - AO353_21535 0.52 -0.8 4,715,145 - AO353_21535 0.52 -1.4 4,715,145 - AO353_21535 0.52 -0.5 4,715,145 - AO353_21535 0.52 +1.1 4,715,150 + AO353_21535 0.53 -1.2 4,715,150 + AO353_21535 0.53 -0.1 4,715,151 - AO353_21535 0.53 -0.4 4,715,151 - AO353_21535 0.53 +0.6 4,715,225 + AO353_21535 0.57 +0.0 4,715,225 + AO353_21535 0.57 +0.5 4,715,226 - AO353_21535 0.57 +0.5
Or see this region's nucleotide sequence