Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21495

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21490 and AO353_21495 are separated by 212 nucleotidesAO353_21495 and AO353_21500 are separated by 37 nucleotides AO353_21490: AO353_21490 - 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase, at 4,702,771 to 4,703,886 _21490 AO353_21495: AO353_21495 - short-chain dehydrogenase, at 4,704,099 to 4,704,866 _21495 AO353_21500: AO353_21500 - aminoglycoside phosphotransferase, at 4,704,904 to 4,705,971 _21500 Position (kb) 4704 4705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4703.114 kb on + strand, within AO353_21490at 4703.115 kb on - strand, within AO353_21490at 4703.230 kb on - strand, within AO353_21490at 4703.230 kb on - strand, within AO353_21490at 4703.492 kb on + strand, within AO353_21490at 4703.492 kb on + strand, within AO353_21490at 4703.492 kb on + strand, within AO353_21490at 4703.492 kb on + strand, within AO353_21490at 4703.493 kb on - strand, within AO353_21490at 4703.493 kb on - strand, within AO353_21490at 4703.493 kb on - strand, within AO353_21490at 4703.493 kb on - strand, within AO353_21490at 4703.498 kb on + strand, within AO353_21490at 4703.498 kb on + strand, within AO353_21490at 4703.498 kb on + strand, within AO353_21490at 4703.499 kb on - strand, within AO353_21490at 4703.588 kb on + strand, within AO353_21490at 4703.703 kb on + strand, within AO353_21490at 4703.704 kb on - strand, within AO353_21490at 4703.704 kb on - strand, within AO353_21490at 4703.704 kb on - strand, within AO353_21490at 4703.704 kb on - strand, within AO353_21490at 4703.863 kb on - strandat 4703.904 kb on + strandat 4703.905 kb on - strandat 4703.905 kb on - strandat 4703.905 kb on - strandat 4703.905 kb on - strandat 4704.023 kb on - strandat 4704.023 kb on - strandat 4704.036 kb on + strandat 4704.143 kb on + strandat 4704.143 kb on + strandat 4704.143 kb on + strandat 4704.143 kb on + strandat 4704.144 kb on - strandat 4704.144 kb on - strandat 4704.144 kb on - strandat 4704.145 kb on + strandat 4704.145 kb on + strandat 4704.146 kb on - strandat 4704.169 kb on + strandat 4704.169 kb on + strandat 4704.169 kb on + strandat 4704.170 kb on - strandat 4704.385 kb on + strand, within AO353_21495at 4704.385 kb on + strand, within AO353_21495at 4704.386 kb on - strand, within AO353_21495at 4704.386 kb on - strand, within AO353_21495at 4704.386 kb on - strand, within AO353_21495at 4704.623 kb on + strand, within AO353_21495at 4704.623 kb on + strand, within AO353_21495at 4704.624 kb on - strand, within AO353_21495at 4704.624 kb on - strand, within AO353_21495at 4704.747 kb on + strand, within AO353_21495at 4704.833 kb on + strandat 4704.834 kb on - strandat 4705.014 kb on - strand, within AO353_21500at 4705.014 kb on - strand, within AO353_21500at 4705.014 kb on - strand, within AO353_21500at 4705.016 kb on + strand, within AO353_21500at 4705.016 kb on + strand, within AO353_21500at 4705.016 kb on + strand, within AO353_21500at 4705.016 kb on + strand, within AO353_21500at 4705.016 kb on + strand, within AO353_21500at 4705.016 kb on + strand, within AO353_21500at 4705.017 kb on - strand, within AO353_21500at 4705.017 kb on - strand, within AO353_21500at 4705.055 kb on + strand, within AO353_21500at 4705.056 kb on - strand, within AO353_21500at 4705.056 kb on - strand, within AO353_21500at 4705.061 kb on + strand, within AO353_21500at 4705.061 kb on + strand, within AO353_21500at 4705.061 kb on + strand, within AO353_21500at 4705.061 kb on + strand, within AO353_21500at 4705.061 kb on + strand, within AO353_21500at 4705.061 kb on + strand, within AO353_21500at 4705.061 kb on + strand, within AO353_21500at 4705.062 kb on - strand, within AO353_21500at 4705.062 kb on - strand, within AO353_21500at 4705.062 kb on - strand, within AO353_21500at 4705.062 kb on - strandat 4705.062 kb on - strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.064 kb on + strand, within AO353_21500at 4705.065 kb on - strand, within AO353_21500at 4705.065 kb on - strand, within AO353_21500at 4705.065 kb on - strand, within AO353_21500at 4705.065 kb on - strand, within AO353_21500at 4705.065 kb on - strand, within AO353_21500at 4705.065 kb on - strand, within AO353_21500at 4705.065 kb on - strand, within AO353_21500at 4705.065 kb on - strand, within AO353_21500at 4705.106 kb on + strand, within AO353_21500at 4705.106 kb on + strand, within AO353_21500at 4705.107 kb on - strand, within AO353_21500at 4705.107 kb on - strandat 4705.110 kb on - strand, within AO353_21500at 4705.205 kb on + strand, within AO353_21500at 4705.466 kb on + strand, within AO353_21500at 4705.466 kb on + strand, within AO353_21500at 4705.467 kb on - strand, within AO353_21500at 4705.467 kb on - strand, within AO353_21500at 4705.467 kb on - strand, within AO353_21500at 4705.483 kb on + strand, within AO353_21500at 4705.483 kb on + strand, within AO353_21500at 4705.484 kb on - strand, within AO353_21500at 4705.484 kb on - strand, within AO353_21500at 4705.484 kb on - strand, within AO353_21500at 4705.484 kb on - strand, within AO353_21500at 4705.508 kb on + strand, within AO353_21500at 4705.636 kb on + strand, within AO353_21500at 4705.636 kb on + strand, within AO353_21500at 4705.636 kb on + strand, within AO353_21500at 4705.636 kb on + strand, within AO353_21500at 4705.636 kb on + strand, within AO353_21500at 4705.636 kb on + strand, within AO353_21500at 4705.636 kb on + strand, within AO353_21500at 4705.637 kb on - strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.640 kb on + strand, within AO353_21500at 4705.641 kb on - strand, within AO353_21500at 4705.641 kb on - strand, within AO353_21500at 4705.641 kb on - strand, within AO353_21500at 4705.641 kb on - strand, within AO353_21500at 4705.641 kb on - strand, within AO353_21500at 4705.682 kb on + strand, within AO353_21500at 4705.682 kb on + strand, within AO353_21500at 4705.683 kb on - strand, within AO353_21500at 4705.683 kb on - strand, within AO353_21500at 4705.789 kb on + strand, within AO353_21500at 4705.790 kb on - strand, within AO353_21500at 4705.790 kb on - strand, within AO353_21500at 4705.823 kb on + strand, within AO353_21500at 4705.823 kb on + strand, within AO353_21500at 4705.824 kb on - strand, within AO353_21500at 4705.824 kb on - strand, within AO353_21500

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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4,703,114 + AO353_21490 0.31 +0.6
4,703,115 - AO353_21490 0.31 -0.9
4,703,230 - AO353_21490 0.41 +0.6
4,703,230 - AO353_21490 0.41 -0.4
4,703,492 + AO353_21490 0.65 -0.1
4,703,492 + AO353_21490 0.65 +1.3
4,703,492 + AO353_21490 0.65 +0.3
4,703,492 + AO353_21490 0.65 -0.1
4,703,493 - AO353_21490 0.65 +1.1
4,703,493 - AO353_21490 0.65 -0.2
4,703,493 - AO353_21490 0.65 +1.0
4,703,493 - AO353_21490 0.65 +0.7
4,703,498 + AO353_21490 0.65 -0.1
4,703,498 + AO353_21490 0.65 -0.6
4,703,498 + AO353_21490 0.65 +0.5
4,703,499 - AO353_21490 0.65 -0.1
4,703,588 + AO353_21490 0.73 +0.5
4,703,703 + AO353_21490 0.84 +0.9
4,703,704 - AO353_21490 0.84 +0.5
4,703,704 - AO353_21490 0.84 +0.7
4,703,704 - AO353_21490 0.84 +1.5
4,703,704 - AO353_21490 0.84 +1.5
4,703,863 - +0.2
4,703,904 + -0.1
4,703,905 - -1.1
4,703,905 - +1.5
4,703,905 - -0.1
4,703,905 - +1.5
4,704,023 - +1.2
4,704,023 - +0.7
4,704,036 + +0.2
4,704,143 + +0.6
4,704,143 + -2.1
4,704,143 + +0.9
4,704,143 + -2.1
4,704,144 - +0.7
4,704,144 - +0.9
4,704,144 - +0.8
4,704,145 + -0.4
4,704,145 + -0.6
4,704,146 - -0.4
4,704,169 + -0.1
4,704,169 + +0.2
4,704,169 + -0.5
4,704,170 - -1.1
4,704,385 + AO353_21495 0.37 +1.7
4,704,385 + AO353_21495 0.37 +0.6
4,704,386 - AO353_21495 0.37 +0.9
4,704,386 - AO353_21495 0.37 +1.8
4,704,386 - AO353_21495 0.37 +0.6
4,704,623 + AO353_21495 0.68 +0.0
4,704,623 + AO353_21495 0.68 +1.5
4,704,624 - AO353_21495 0.68 +0.2
4,704,624 - AO353_21495 0.68 -3.1
4,704,747 + AO353_21495 0.84 -1.0
4,704,833 + +2.2
4,704,834 - +0.1
4,705,014 - AO353_21500 0.10 -0.1
4,705,014 - AO353_21500 0.10 +0.7
4,705,014 - AO353_21500 0.10 -1.1
4,705,016 + AO353_21500 0.10 +1.1
4,705,016 + AO353_21500 0.10 -0.4
4,705,016 + AO353_21500 0.10 +0.6
4,705,016 + AO353_21500 0.10 +0.3
4,705,016 + AO353_21500 0.10 -0.5
4,705,016 + AO353_21500 0.10 -0.4
4,705,017 - AO353_21500 0.11 -0.1
4,705,017 - AO353_21500 0.11 +0.5
4,705,055 + AO353_21500 0.14 +0.0
4,705,056 - AO353_21500 0.14 +1.9
4,705,056 - AO353_21500 0.14 +1.7
4,705,061 + AO353_21500 0.15 +0.9
4,705,061 + AO353_21500 0.15 -0.1
4,705,061 + AO353_21500 0.15 +1.1
4,705,061 + AO353_21500 0.15 +0.5
4,705,061 + AO353_21500 0.15 -0.1
4,705,061 + AO353_21500 0.15 +1.0
4,705,061 + AO353_21500 0.15 -0.7
4,705,062 - AO353_21500 0.15 +1.3
4,705,062 - AO353_21500 0.15 +2.1
4,705,062 - AO353_21500 0.15 -0.8
4,705,062 - -1.7
4,705,062 - AO353_21500 0.15 -0.1
4,705,064 + AO353_21500 0.15 -1.1
4,705,064 + AO353_21500 0.15 -0.9
4,705,064 + AO353_21500 0.15 +0.9
4,705,064 + AO353_21500 0.15 +0.5
4,705,064 + AO353_21500 0.15 -0.5
4,705,064 + AO353_21500 0.15 +1.1
4,705,064 + AO353_21500 0.15 -1.1
4,705,064 + AO353_21500 0.15 +0.7
4,705,064 + AO353_21500 0.15 -1.9
4,705,064 + AO353_21500 0.15 -0.6
4,705,064 + AO353_21500 0.15 -0.9
4,705,064 + AO353_21500 0.15 +0.5
4,705,065 - AO353_21500 0.15 -1.1
4,705,065 - AO353_21500 0.15 +0.9
4,705,065 - AO353_21500 0.15 -0.5
4,705,065 - AO353_21500 0.15 +0.6
4,705,065 - AO353_21500 0.15 +0.6
4,705,065 - AO353_21500 0.15 +0.5
4,705,065 - AO353_21500 0.15 +0.1
4,705,065 - AO353_21500 0.15 +1.5
4,705,106 + AO353_21500 0.19 -0.7
4,705,106 + AO353_21500 0.19 -0.1
4,705,107 - AO353_21500 0.19 -2.1
4,705,107 - -0.7
4,705,110 - AO353_21500 0.19 +0.5
4,705,205 + AO353_21500 0.28 -0.5
4,705,466 + AO353_21500 0.53 -0.1
4,705,466 + AO353_21500 0.53 -0.1
4,705,467 - AO353_21500 0.53 +0.3
4,705,467 - AO353_21500 0.53 +0.9
4,705,467 - AO353_21500 0.53 +0.0
4,705,483 + AO353_21500 0.54 -0.1
4,705,483 + AO353_21500 0.54 +0.6
4,705,484 - AO353_21500 0.54 +0.5
4,705,484 - AO353_21500 0.54 -2.0
4,705,484 - AO353_21500 0.54 +0.5
4,705,484 - AO353_21500 0.54 +1.2
4,705,508 + AO353_21500 0.57 +0.1
4,705,636 + AO353_21500 0.69 -1.1
4,705,636 + AO353_21500 0.69 -0.6
4,705,636 + AO353_21500 0.69 -1.7
4,705,636 + AO353_21500 0.69 -0.4
4,705,636 + AO353_21500 0.69 -0.1
4,705,636 + AO353_21500 0.69 -1.4
4,705,636 + AO353_21500 0.69 +1.1
4,705,637 - AO353_21500 0.69 +0.3
4,705,640 + AO353_21500 0.69 -0.1
4,705,640 + AO353_21500 0.69 -0.1
4,705,640 + AO353_21500 0.69 -0.1
4,705,640 + AO353_21500 0.69 +0.0
4,705,640 + AO353_21500 0.69 -1.3
4,705,640 + AO353_21500 0.69 +0.3
4,705,640 + AO353_21500 0.69 -1.3
4,705,640 + AO353_21500 0.69 -0.1
4,705,640 + AO353_21500 0.69 -0.7
4,705,640 + AO353_21500 0.69 -0.1
4,705,640 + AO353_21500 0.69 -0.1
4,705,640 + AO353_21500 0.69 -0.5
4,705,640 + AO353_21500 0.69 +1.1
4,705,641 - AO353_21500 0.69 +0.5
4,705,641 - AO353_21500 0.69 +0.9
4,705,641 - AO353_21500 0.69 -0.1
4,705,641 - AO353_21500 0.69 +0.8
4,705,641 - AO353_21500 0.69 +1.1
4,705,682 + AO353_21500 0.73 -0.1
4,705,682 + AO353_21500 0.73 -1.5
4,705,683 - AO353_21500 0.73 -1.3
4,705,683 - AO353_21500 0.73 +0.6
4,705,789 + AO353_21500 0.83 -0.3
4,705,790 - AO353_21500 0.83 -1.1
4,705,790 - AO353_21500 0.83 +0.7
4,705,823 + AO353_21500 0.86 -2.7
4,705,823 + AO353_21500 0.86 -1.7
4,705,824 - AO353_21500 0.86 +0.1
4,705,824 - AO353_21500 0.86 -0.1

Or see this region's nucleotide sequence