Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21490

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21485 and AO353_21490 are separated by 28 nucleotidesAO353_21490 and AO353_21495 are separated by 212 nucleotides AO353_21485: AO353_21485 - pyridine nucleotide-disulfide oxidoreductase, at 4,701,315 to 4,702,742 _21485 AO353_21490: AO353_21490 - 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase, at 4,702,771 to 4,703,886 _21490 AO353_21495: AO353_21495 - short-chain dehydrogenase, at 4,704,099 to 4,704,866 _21495 Position (kb) 4702 4703 4704Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4701.784 kb on + strand, within AO353_21485at 4701.784 kb on + strand, within AO353_21485at 4701.785 kb on - strand, within AO353_21485at 4701.785 kb on - strand, within AO353_21485at 4702.498 kb on - strand, within AO353_21485at 4702.555 kb on + strand, within AO353_21485at 4702.556 kb on - strand, within AO353_21485at 4702.727 kb on - strandat 4702.727 kb on - strandat 4702.785 kb on + strandat 4702.934 kb on + strand, within AO353_21490at 4702.935 kb on - strand, within AO353_21490at 4703.038 kb on + strand, within AO353_21490at 4703.039 kb on - strand, within AO353_21490at 4703.039 kb on - strand, within AO353_21490at 4703.039 kb on - strand, within AO353_21490at 4703.114 kb on + strand, within AO353_21490at 4703.115 kb on - strand, within AO353_21490at 4703.230 kb on - strand, within AO353_21490at 4703.230 kb on - strand, within AO353_21490at 4703.492 kb on + strand, within AO353_21490at 4703.492 kb on + strand, within AO353_21490at 4703.492 kb on + strand, within AO353_21490at 4703.492 kb on + strand, within AO353_21490at 4703.493 kb on - strand, within AO353_21490at 4703.493 kb on - strand, within AO353_21490at 4703.493 kb on - strand, within AO353_21490at 4703.493 kb on - strand, within AO353_21490at 4703.498 kb on + strand, within AO353_21490at 4703.498 kb on + strand, within AO353_21490at 4703.498 kb on + strand, within AO353_21490at 4703.499 kb on - strand, within AO353_21490at 4703.588 kb on + strand, within AO353_21490at 4703.703 kb on + strand, within AO353_21490at 4703.704 kb on - strand, within AO353_21490at 4703.704 kb on - strand, within AO353_21490at 4703.704 kb on - strand, within AO353_21490at 4703.704 kb on - strand, within AO353_21490at 4703.863 kb on - strandat 4703.904 kb on + strandat 4703.905 kb on - strandat 4703.905 kb on - strandat 4703.905 kb on - strandat 4703.905 kb on - strandat 4704.023 kb on - strandat 4704.023 kb on - strandat 4704.036 kb on + strandat 4704.143 kb on + strandat 4704.143 kb on + strandat 4704.143 kb on + strandat 4704.143 kb on + strandat 4704.144 kb on - strandat 4704.144 kb on - strandat 4704.144 kb on - strandat 4704.145 kb on + strandat 4704.145 kb on + strandat 4704.146 kb on - strandat 4704.169 kb on + strandat 4704.169 kb on + strandat 4704.169 kb on + strandat 4704.170 kb on - strandat 4704.385 kb on + strand, within AO353_21495at 4704.385 kb on + strand, within AO353_21495at 4704.386 kb on - strand, within AO353_21495at 4704.386 kb on - strand, within AO353_21495at 4704.386 kb on - strand, within AO353_21495at 4704.623 kb on + strand, within AO353_21495at 4704.623 kb on + strand, within AO353_21495at 4704.624 kb on - strand, within AO353_21495at 4704.624 kb on - strand, within AO353_21495at 4704.747 kb on + strand, within AO353_21495at 4704.833 kb on + strandat 4704.834 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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4,701,784 + AO353_21485 0.33 +0.5
4,701,784 + AO353_21485 0.33 +0.9
4,701,785 - AO353_21485 0.33 -1.5
4,701,785 - AO353_21485 0.33 -0.9
4,702,498 - AO353_21485 0.83 -0.8
4,702,555 + AO353_21485 0.87 -1.4
4,702,556 - AO353_21485 0.87 -0.7
4,702,727 - -0.8
4,702,727 - -0.5
4,702,785 + -1.7
4,702,934 + AO353_21490 0.15 +0.6
4,702,935 - AO353_21490 0.15 +0.1
4,703,038 + AO353_21490 0.24 +0.2
4,703,039 - AO353_21490 0.24 -0.5
4,703,039 - AO353_21490 0.24 +0.1
4,703,039 - AO353_21490 0.24 +1.5
4,703,114 + AO353_21490 0.31 +0.6
4,703,115 - AO353_21490 0.31 -0.9
4,703,230 - AO353_21490 0.41 +0.6
4,703,230 - AO353_21490 0.41 -0.4
4,703,492 + AO353_21490 0.65 -0.1
4,703,492 + AO353_21490 0.65 +1.3
4,703,492 + AO353_21490 0.65 +0.3
4,703,492 + AO353_21490 0.65 -0.1
4,703,493 - AO353_21490 0.65 +1.1
4,703,493 - AO353_21490 0.65 -0.2
4,703,493 - AO353_21490 0.65 +1.0
4,703,493 - AO353_21490 0.65 +0.7
4,703,498 + AO353_21490 0.65 -0.1
4,703,498 + AO353_21490 0.65 -0.6
4,703,498 + AO353_21490 0.65 +0.5
4,703,499 - AO353_21490 0.65 -0.1
4,703,588 + AO353_21490 0.73 +0.5
4,703,703 + AO353_21490 0.84 +0.9
4,703,704 - AO353_21490 0.84 +0.5
4,703,704 - AO353_21490 0.84 +0.7
4,703,704 - AO353_21490 0.84 +1.5
4,703,704 - AO353_21490 0.84 +1.5
4,703,863 - +0.2
4,703,904 + -0.1
4,703,905 - -1.1
4,703,905 - +1.5
4,703,905 - -0.1
4,703,905 - +1.5
4,704,023 - +1.2
4,704,023 - +0.7
4,704,036 + +0.2
4,704,143 + +0.6
4,704,143 + -2.1
4,704,143 + +0.9
4,704,143 + -2.1
4,704,144 - +0.7
4,704,144 - +0.9
4,704,144 - +0.8
4,704,145 + -0.4
4,704,145 + -0.6
4,704,146 - -0.4
4,704,169 + -0.1
4,704,169 + +0.2
4,704,169 + -0.5
4,704,170 - -1.1
4,704,385 + AO353_21495 0.37 +1.7
4,704,385 + AO353_21495 0.37 +0.6
4,704,386 - AO353_21495 0.37 +0.9
4,704,386 - AO353_21495 0.37 +1.8
4,704,386 - AO353_21495 0.37 +0.6
4,704,623 + AO353_21495 0.68 +0.0
4,704,623 + AO353_21495 0.68 +1.5
4,704,624 - AO353_21495 0.68 +0.2
4,704,624 - AO353_21495 0.68 -3.1
4,704,747 + AO353_21495 0.84 -1.0
4,704,833 + +2.2
4,704,834 - +0.1

Or see this region's nucleotide sequence