Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20040

Experiment: Ionizing radiation, 126.196 Gy,

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_20035 and AO353_20040 are separated by 510 nucleotidesAO353_20040 and AO353_20045 are separated by 206 nucleotidesAO353_20045 and AO353_20050 are separated by 94 nucleotides AO353_20035: AO353_20035 - ATPase, at 4,405,057 to 4,407,765 _20035 AO353_20040: AO353_20040 - hypothetical protein, at 4,408,276 to 4,408,860 _20040 AO353_20045: AO353_20045 - molecular chaperone Hsp20, at 4,409,067 to 4,409,612 _20045 AO353_20050: AO353_20050 - arginine-ornithine antiporter, at 4,409,707 to 4,411,200 _20050 Position (kb) 4408 4409Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4407.314 kb on - strand, within AO353_20035at 4407.314 kb on - strand, within AO353_20035at 4407.424 kb on + strand, within AO353_20035at 4407.425 kb on - strand, within AO353_20035at 4407.425 kb on - strand, within AO353_20035at 4407.425 kb on - strand, within AO353_20035at 4407.468 kb on - strand, within AO353_20035at 4407.592 kb on + strandat 4407.592 kb on + strandat 4407.593 kb on - strandat 4407.593 kb on - strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.594 kb on + strandat 4407.595 kb on - strandat 4407.595 kb on - strandat 4407.595 kb on - strandat 4407.595 kb on - strandat 4407.595 kb on - strandat 4407.595 kb on - strandat 4407.595 kb on - strandat 4407.656 kb on + strandat 4407.656 kb on + strandat 4407.656 kb on + strandat 4407.657 kb on - strandat 4407.657 kb on - strandat 4407.657 kb on - strandat 4407.703 kb on + strandat 4407.703 kb on + strandat 4407.767 kb on - strandat 4407.794 kb on + strandat 4407.794 kb on + strandat 4407.795 kb on - strandat 4407.795 kb on - strandat 4407.795 kb on - strandat 4407.795 kb on - strandat 4407.846 kb on + strandat 4407.846 kb on + strandat 4407.847 kb on - strandat 4407.847 kb on - strandat 4407.847 kb on - strandat 4407.847 kb on - strandat 4407.847 kb on - strandat 4407.864 kb on + strandat 4407.864 kb on + strandat 4407.865 kb on - strandat 4407.865 kb on - strandat 4407.865 kb on - strandat 4407.918 kb on + strandat 4407.918 kb on + strandat 4407.918 kb on + strandat 4407.918 kb on + strandat 4407.919 kb on - strandat 4407.919 kb on - strandat 4407.919 kb on - strandat 4407.919 kb on - strandat 4407.919 kb on - strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.920 kb on + strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.921 kb on - strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.922 kb on + strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.923 kb on - strandat 4407.928 kb on + strandat 4407.932 kb on - strandat 4407.932 kb on - strandat 4407.952 kb on + strandat 4407.952 kb on + strandat 4407.952 kb on + strandat 4407.953 kb on - strandat 4407.953 kb on - strandat 4407.953 kb on - strandat 4407.955 kb on + strandat 4407.955 kb on + strandat 4407.955 kb on + strandat 4407.956 kb on - strandat 4407.956 kb on - strandat 4407.956 kb on - strandat 4407.956 kb on - strandat 4408.018 kb on + strandat 4408.018 kb on + strandat 4408.018 kb on + strandat 4408.018 kb on + strandat 4408.018 kb on + strandat 4408.018 kb on + strandat 4408.019 kb on - strandat 4408.021 kb on + strandat 4408.021 kb on + strandat 4408.021 kb on + strandat 4408.021 kb on + strandat 4408.022 kb on - strandat 4408.022 kb on - strandat 4408.039 kb on + strandat 4408.039 kb on + strandat 4408.039 kb on + strandat 4408.040 kb on - strandat 4408.042 kb on + strandat 4408.043 kb on - strandat 4408.063 kb on + strandat 4408.063 kb on + strandat 4408.064 kb on - strandat 4408.064 kb on - strandat 4408.064 kb on - strandat 4408.064 kb on - strandat 4408.064 kb on - strandat 4408.066 kb on + strandat 4408.251 kb on + strandat 4408.252 kb on - strandat 4408.252 kb on - strandat 4408.270 kb on + strandat 4408.277 kb on + strandat 4408.277 kb on + strandat 4408.277 kb on + strandat 4408.278 kb on - strandat 4408.427 kb on + strand, within AO353_20040at 4408.427 kb on + strand, within AO353_20040at 4408.428 kb on - strand, within AO353_20040at 4408.641 kb on + strand, within AO353_20040at 4408.641 kb on + strand, within AO353_20040at 4408.641 kb on + strand, within AO353_20040at 4408.641 kb on + strand, within AO353_20040at 4408.641 kb on + strand, within AO353_20040at 4408.641 kb on + strand, within AO353_20040at 4408.641 kb on + strand, within AO353_20040at 4408.642 kb on - strand, within AO353_20040at 4408.642 kb on - strand, within AO353_20040at 4408.778 kb on + strand, within AO353_20040at 4408.807 kb on + strandat 4408.807 kb on + strandat 4408.807 kb on + strandat 4408.807 kb on + strandat 4408.807 kb on + strandat 4408.808 kb on - strandat 4408.808 kb on - strandat 4408.808 kb on - strandat 4408.808 kb on - strandat 4408.808 kb on - strandat 4408.808 kb on - strandat 4408.808 kb on - strandat 4408.808 kb on - strandat 4408.900 kb on + strandat 4408.901 kb on - strandat 4408.914 kb on - strandat 4408.947 kb on + strandat 4408.947 kb on + strandat 4408.947 kb on + strandat 4408.947 kb on + strandat 4408.948 kb on - strandat 4408.948 kb on - strandat 4408.977 kb on + strandat 4408.977 kb on + strandat 4408.977 kb on + strandat 4408.978 kb on - strandat 4408.980 kb on + strandat 4408.981 kb on - strandat 4409.004 kb on + strandat 4409.004 kb on + strandat 4409.005 kb on - strandat 4409.005 kb on - strandat 4409.086 kb on - strandat 4409.219 kb on - strand, within AO353_20045at 4409.219 kb on - strand, within AO353_20045at 4409.236 kb on + strand, within AO353_20045at 4409.236 kb on + strand, within AO353_20045at 4409.236 kb on + strand, within AO353_20045at 4409.237 kb on - strand, within AO353_20045at 4409.237 kb on - strand, within AO353_20045at 4409.237 kb on - strand, within AO353_20045at 4409.237 kb on - strand, within AO353_20045at 4409.237 kb on - strand, within AO353_20045at 4409.237 kb on - strand, within AO353_20045at 4409.237 kb on - strand, within AO353_20045at 4409.237 kb on - strand, within AO353_20045at 4409.237 kb on - strand, within AO353_20045at 4409.239 kb on + strand, within AO353_20045at 4409.239 kb on + strand, within AO353_20045at 4409.239 kb on + strand, within AO353_20045at 4409.239 kb on + strand, within AO353_20045at 4409.239 kb on + strand, within AO353_20045at 4409.239 kb on + strand, within AO353_20045at 4409.240 kb on - strand, within AO353_20045at 4409.366 kb on + strand, within AO353_20045at 4409.366 kb on + strand, within AO353_20045at 4409.421 kb on + strand, within AO353_20045at 4409.421 kb on + strand, within AO353_20045at 4409.633 kb on + strandat 4409.708 kb on + strandat 4409.708 kb on + strandat 4409.709 kb on - strandat 4409.709 kb on - strandat 4409.834 kb on + strandat 4409.835 kb on - strandat 4409.835 kb on - strandat 4409.855 kb on + strandat 4409.855 kb on + strandat 4409.856 kb on - strandat 4409.856 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
remove
4,407,314 - AO353_20035 0.83 +0.5
4,407,314 - AO353_20035 0.83 +0.3
4,407,424 + AO353_20035 0.87 +0.3
4,407,425 - AO353_20035 0.87 +0.2
4,407,425 - AO353_20035 0.87 -0.1
4,407,425 - AO353_20035 0.87 -0.5
4,407,468 - AO353_20035 0.89 +0.3
4,407,592 + +0.2
4,407,592 + -1.7
4,407,593 - +1.7
4,407,593 - +0.2
4,407,594 + +0.5
4,407,594 + -0.5
4,407,594 + -0.8
4,407,594 + -1.1
4,407,594 + +0.6
4,407,594 + +0.3
4,407,594 + -0.4
4,407,594 + +1.1
4,407,594 + +2.2
4,407,594 + -0.1
4,407,594 + +0.7
4,407,594 + -1.1
4,407,594 + -0.8
4,407,594 + +0.9
4,407,595 - -0.1
4,407,595 - +1.9
4,407,595 - +0.6
4,407,595 - +0.9
4,407,595 - -0.1
4,407,595 - -0.1
4,407,595 - +0.9
4,407,656 + -0.8
4,407,656 + -0.1
4,407,656 + -1.3
4,407,657 - -0.6
4,407,657 - +0.9
4,407,657 - -0.1
4,407,703 + -0.1
4,407,703 + +0.9
4,407,767 - -0.8
4,407,794 + +0.1
4,407,794 + -1.7
4,407,795 - -1.3
4,407,795 - -1.7
4,407,795 - +0.5
4,407,795 - -0.5
4,407,846 + +0.5
4,407,846 + -0.7
4,407,847 - -1.7
4,407,847 - -0.5
4,407,847 - +0.6
4,407,847 - -0.1
4,407,847 - +0.2
4,407,864 + +1.5
4,407,864 + -0.1
4,407,865 - +0.3
4,407,865 - -1.0
4,407,865 - -0.7
4,407,918 + -0.1
4,407,918 + +0.9
4,407,918 + -1.1
4,407,918 + -1.0
4,407,919 - -0.1
4,407,919 - -0.7
4,407,919 - -0.2
4,407,919 - -0.1
4,407,919 - -0.4
4,407,920 + -0.8
4,407,920 + +0.2
4,407,920 + +0.2
4,407,920 + -0.8
4,407,920 + +2.2
4,407,920 + +0.3
4,407,920 + +1.5
4,407,920 + -0.8
4,407,920 + -0.3
4,407,920 + +1.2
4,407,920 + +0.3
4,407,920 + -0.5
4,407,920 + +0.7
4,407,921 - +0.4
4,407,921 - -0.8
4,407,921 - -0.4
4,407,921 - +1.6
4,407,921 - +0.5
4,407,921 - -0.1
4,407,921 - -0.1
4,407,921 - +0.4
4,407,921 - +0.0
4,407,921 - +0.9
4,407,921 - +0.9
4,407,921 - -0.1
4,407,922 + -0.8
4,407,922 + +0.4
4,407,922 + +0.2
4,407,922 + +0.1
4,407,922 + -0.1
4,407,922 + -1.8
4,407,922 + -0.1
4,407,922 + -0.1
4,407,922 + -0.1
4,407,922 + -0.1
4,407,922 + +0.9
4,407,922 + +0.9
4,407,922 + -0.1
4,407,923 - +0.2
4,407,923 - -0.1
4,407,923 - +0.9
4,407,923 - -1.1
4,407,923 - +0.2
4,407,923 - -0.1
4,407,923 - -0.1
4,407,923 - +0.2
4,407,923 - +0.6
4,407,923 - -1.7
4,407,923 - +0.3
4,407,923 - +0.8
4,407,923 - -0.1
4,407,923 - -0.1
4,407,923 - +0.2
4,407,923 - -1.1
4,407,923 - +0.5
4,407,923 - -1.4
4,407,923 - -0.8
4,407,923 - -3.3
4,407,923 - -1.3
4,407,928 + -0.1
4,407,932 - -1.9
4,407,932 - +0.9
4,407,952 + +0.9
4,407,952 + -0.6
4,407,952 + -0.6
4,407,953 - -0.9
4,407,953 - -0.3
4,407,953 - +0.2
4,407,955 + -0.4
4,407,955 + +0.3
4,407,955 + +0.2
4,407,956 - -1.1
4,407,956 - +0.5
4,407,956 - +0.1
4,407,956 - +1.3
4,408,018 + +0.6
4,408,018 + -0.5
4,408,018 + -0.4
4,408,018 + -0.1
4,408,018 + -0.9
4,408,018 + +0.4
4,408,019 - +0.5
4,408,021 + +0.2
4,408,021 + -0.8
4,408,021 + +0.9
4,408,021 + -2.7
4,408,022 - -1.1
4,408,022 - -1.3
4,408,039 + -2.4
4,408,039 + -2.1
4,408,039 + +0.9
4,408,040 - -1.7
4,408,042 + -1.3
4,408,043 - -1.1
4,408,063 + -1.3
4,408,063 + +1.3
4,408,064 - -0.1
4,408,064 - -0.7
4,408,064 - +0.4
4,408,064 - -1.1
4,408,064 - -0.1
4,408,066 + -0.5
4,408,251 + -1.5
4,408,252 - -2.1
4,408,252 - -0.7
4,408,270 + +0.6
4,408,277 + -2.4
4,408,277 + +3.1
4,408,277 + -0.5
4,408,278 - +0.5
4,408,427 + AO353_20040 0.26 +0.9
4,408,427 + AO353_20040 0.26 +0.9
4,408,428 - AO353_20040 0.26 +0.5
4,408,641 + AO353_20040 0.62 +1.2
4,408,641 + AO353_20040 0.62 -1.4
4,408,641 + AO353_20040 0.62 -0.8
4,408,641 + AO353_20040 0.62 +0.0
4,408,641 + AO353_20040 0.62 -1.3
4,408,641 + AO353_20040 0.62 +0.0
4,408,641 + AO353_20040 0.62 +0.9
4,408,642 - AO353_20040 0.63 -0.1
4,408,642 - AO353_20040 0.63 +1.5
4,408,778 + AO353_20040 0.86 +0.3
4,408,807 + -0.4
4,408,807 + -1.1
4,408,807 + -0.4
4,408,807 + -0.8
4,408,807 + -0.1
4,408,808 - -0.1
4,408,808 - +1.5
4,408,808 - +1.2
4,408,808 - -0.1
4,408,808 - +0.1
4,408,808 - +1.1
4,408,808 - -0.9
4,408,808 - +1.9
4,408,900 + +0.4
4,408,901 - +2.7
4,408,914 - -1.7
4,408,947 + +0.1
4,408,947 + -0.7
4,408,947 + -1.1
4,408,947 + +0.9
4,408,948 - -0.1
4,408,948 - -0.4
4,408,977 + +0.1
4,408,977 + -1.7
4,408,977 + -0.6
4,408,978 - -0.7
4,408,980 + -0.1
4,408,981 - +1.2
4,409,004 + +0.0
4,409,004 + -1.1
4,409,005 - +0.6
4,409,005 - +0.6
4,409,086 - +0.2
4,409,219 - AO353_20045 0.28 -2.4
4,409,219 - AO353_20045 0.28 -1.3
4,409,236 + AO353_20045 0.31 -1.1
4,409,236 + AO353_20045 0.31 +1.3
4,409,236 + AO353_20045 0.31 -0.2
4,409,237 - AO353_20045 0.31 -0.9
4,409,237 - AO353_20045 0.31 +0.1
4,409,237 - AO353_20045 0.31 -1.3
4,409,237 - AO353_20045 0.31 -0.7
4,409,237 - AO353_20045 0.31 -0.1
4,409,237 - AO353_20045 0.31 +1.7
4,409,237 - AO353_20045 0.31 -2.6
4,409,237 - AO353_20045 0.31 +0.3
4,409,237 - AO353_20045 0.31 -1.0
4,409,239 + AO353_20045 0.32 +0.3
4,409,239 + AO353_20045 0.32 -0.2
4,409,239 + AO353_20045 0.32 -0.8
4,409,239 + AO353_20045 0.32 -0.1
4,409,239 + AO353_20045 0.32 +0.5
4,409,239 + AO353_20045 0.32 -1.9
4,409,240 - AO353_20045 0.32 -0.8
4,409,366 + AO353_20045 0.55 -0.4
4,409,366 + AO353_20045 0.55 +0.1
4,409,421 + AO353_20045 0.65 -1.0
4,409,421 + AO353_20045 0.65 -0.1
4,409,633 + -0.4
4,409,708 + -0.1
4,409,708 + +2.7
4,409,709 - -2.1
4,409,709 - -0.1
4,409,834 + +0.5
4,409,835 - -0.9
4,409,835 - +0.5
4,409,855 + +0.4
4,409,855 + -1.3
4,409,856 - -1.0
4,409,856 - -0.4

Or see this region's nucleotide sequence