Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19705

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19700 and AO353_19705 overlap by 4 nucleotidesAO353_19705 and AO353_19710 overlap by 4 nucleotides AO353_19700: AO353_19700 - hypothetical protein, at 4,322,538 to 4,324,994 _19700 AO353_19705: AO353_19705 - VWA containing CoxE family protein, at 4,324,991 to 4,326,118 _19705 AO353_19710: AO353_19710 - hypothetical protein, at 4,326,115 to 4,328,181 _19710 Position (kb) 4324 4325 4326 4327Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4324.033 kb on - strand, within AO353_19700at 4324.080 kb on + strand, within AO353_19700at 4324.080 kb on + strand, within AO353_19700at 4324.080 kb on + strand, within AO353_19700at 4324.080 kb on + strand, within AO353_19700at 4324.080 kb on + strand, within AO353_19700at 4324.081 kb on - strand, within AO353_19700at 4324.371 kb on - strand, within AO353_19700at 4324.371 kb on - strand, within AO353_19700at 4324.392 kb on + strand, within AO353_19700at 4324.392 kb on + strand, within AO353_19700at 4324.392 kb on + strand, within AO353_19700at 4324.392 kb on + strand, within AO353_19700at 4324.392 kb on + strand, within AO353_19700at 4324.392 kb on + strand, within AO353_19700at 4324.393 kb on - strand, within AO353_19700at 4324.506 kb on + strand, within AO353_19700at 4324.506 kb on + strand, within AO353_19700at 4324.506 kb on + strand, within AO353_19700at 4324.507 kb on - strandat 4324.507 kb on - strand, within AO353_19700at 4324.578 kb on + strand, within AO353_19700at 4324.579 kb on - strand, within AO353_19700at 4324.579 kb on - strand, within AO353_19700at 4324.668 kb on + strand, within AO353_19700at 4324.668 kb on + strand, within AO353_19700at 4324.727 kb on - strand, within AO353_19700at 4324.835 kb on + strandat 4324.835 kb on + strandat 4324.836 kb on - strandat 4324.836 kb on - strandat 4324.836 kb on - strandat 4324.837 kb on + strandat 4324.837 kb on + strandat 4324.837 kb on + strandat 4324.837 kb on + strandat 4324.838 kb on - strandat 4324.838 kb on - strandat 4325.030 kb on + strandat 4325.030 kb on + strandat 4325.031 kb on - strandat 4325.031 kb on - strandat 4325.031 kb on - strandat 4325.031 kb on - strandat 4325.031 kb on - strandat 4325.031 kb on - strandat 4325.031 kb on - strandat 4325.038 kb on + strandat 4325.038 kb on + strandat 4325.039 kb on - strandat 4325.039 kb on - strandat 4325.111 kb on + strand, within AO353_19705at 4325.111 kb on + strand, within AO353_19705at 4325.117 kb on + strand, within AO353_19705at 4325.117 kb on + strand, within AO353_19705at 4325.129 kb on + strand, within AO353_19705at 4325.129 kb on + strand, within AO353_19705at 4325.130 kb on - strand, within AO353_19705at 4325.145 kb on + strand, within AO353_19705at 4325.555 kb on + strand, within AO353_19705at 4325.556 kb on - strand, within AO353_19705at 4325.556 kb on - strand, within AO353_19705at 4325.909 kb on + strand, within AO353_19705at 4325.909 kb on + strand, within AO353_19705at 4325.909 kb on + strand, within AO353_19705at 4325.910 kb on - strand, within AO353_19705at 4325.910 kb on - strand, within AO353_19705at 4325.910 kb on - strand, within AO353_19705at 4325.910 kb on - strand, within AO353_19705at 4325.910 kb on - strand, within AO353_19705at 4326.018 kb on - strandat 4326.209 kb on - strandat 4326.634 kb on + strand, within AO353_19710at 4326.634 kb on + strand, within AO353_19710at 4326.635 kb on - strand, within AO353_19710at 4326.635 kb on - strand, within AO353_19710at 4326.635 kb on - strand, within AO353_19710at 4326.635 kb on - strand, within AO353_19710at 4326.635 kb on - strand, within AO353_19710at 4326.635 kb on - strand, within AO353_19710at 4326.635 kb on - strand, within AO353_19710at 4326.636 kb on + strand, within AO353_19710at 4326.636 kb on + strand, within AO353_19710at 4326.636 kb on + strand, within AO353_19710at 4326.637 kb on - strand, within AO353_19710at 4326.694 kb on + strand, within AO353_19710at 4326.695 kb on - strand, within AO353_19710at 4326.898 kb on + strand, within AO353_19710at 4326.898 kb on + strand, within AO353_19710at 4326.899 kb on - strand, within AO353_19710at 4326.899 kb on - strand, within AO353_19710at 4327.045 kb on + strand, within AO353_19710at 4327.045 kb on + strand, within AO353_19710at 4327.045 kb on + strand, within AO353_19710at 4327.046 kb on - strand, within AO353_19710at 4327.046 kb on - strand, within AO353_19710

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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4,324,033 - AO353_19700 0.61 -1.3
4,324,080 + AO353_19700 0.63 +1.1
4,324,080 + AO353_19700 0.63 -0.7
4,324,080 + AO353_19700 0.63 -0.9
4,324,080 + AO353_19700 0.63 -1.1
4,324,080 + AO353_19700 0.63 -0.5
4,324,081 - AO353_19700 0.63 +0.5
4,324,371 - AO353_19700 0.75 -0.1
4,324,371 - AO353_19700 0.75 -0.1
4,324,392 + AO353_19700 0.75 +1.7
4,324,392 + AO353_19700 0.75 -0.1
4,324,392 + AO353_19700 0.75 +1.2
4,324,392 + AO353_19700 0.75 +1.9
4,324,392 + AO353_19700 0.75 -0.4
4,324,392 + AO353_19700 0.75 +0.5
4,324,393 - AO353_19700 0.75 +0.8
4,324,506 + AO353_19700 0.80 -0.6
4,324,506 + AO353_19700 0.80 +1.5
4,324,506 + AO353_19700 0.80 -0.1
4,324,507 - -0.5
4,324,507 - AO353_19700 0.80 -0.1
4,324,578 + AO353_19700 0.83 -0.1
4,324,579 - AO353_19700 0.83 -1.1
4,324,579 - AO353_19700 0.83 -0.3
4,324,668 + AO353_19700 0.87 -0.1
4,324,668 + AO353_19700 0.87 -1.1
4,324,727 - AO353_19700 0.89 -0.8
4,324,835 + -0.3
4,324,835 + -1.1
4,324,836 - +1.8
4,324,836 - -0.5
4,324,836 - -0.1
4,324,837 + -0.1
4,324,837 + +0.9
4,324,837 + -0.5
4,324,837 + +0.8
4,324,838 - +0.7
4,324,838 - +0.4
4,325,030 + -1.4
4,325,030 + -1.7
4,325,031 - +1.5
4,325,031 - -1.9
4,325,031 - -1.7
4,325,031 - -0.6
4,325,031 - +2.7
4,325,031 - -1.3
4,325,031 - -0.6
4,325,038 + +0.9
4,325,038 + -0.3
4,325,039 - -1.1
4,325,039 - -0.5
4,325,111 + AO353_19705 0.11 +0.9
4,325,111 + AO353_19705 0.11 +0.7
4,325,117 + AO353_19705 0.11 +1.1
4,325,117 + AO353_19705 0.11 +1.8
4,325,129 + AO353_19705 0.12 -0.7
4,325,129 + AO353_19705 0.12 -1.1
4,325,130 - AO353_19705 0.12 +0.1
4,325,145 + AO353_19705 0.14 -0.4
4,325,555 + AO353_19705 0.50 +0.7
4,325,556 - AO353_19705 0.50 -1.4
4,325,556 - AO353_19705 0.50 +0.8
4,325,909 + AO353_19705 0.81 -0.1
4,325,909 + AO353_19705 0.81 +0.9
4,325,909 + AO353_19705 0.81 +0.7
4,325,910 - AO353_19705 0.81 +0.8
4,325,910 - AO353_19705 0.81 +0.8
4,325,910 - AO353_19705 0.81 -1.4
4,325,910 - AO353_19705 0.81 -0.9
4,325,910 - AO353_19705 0.81 +0.5
4,326,018 - -1.9
4,326,209 - -1.9
4,326,634 + AO353_19710 0.25 -0.1
4,326,634 + AO353_19710 0.25 -1.7
4,326,635 - AO353_19710 0.25 +1.1
4,326,635 - AO353_19710 0.25 +0.5
4,326,635 - AO353_19710 0.25 -2.4
4,326,635 - AO353_19710 0.25 +0.3
4,326,635 - AO353_19710 0.25 +0.9
4,326,635 - AO353_19710 0.25 -0.1
4,326,635 - AO353_19710 0.25 -0.4
4,326,636 + AO353_19710 0.25 +0.6
4,326,636 + AO353_19710 0.25 -0.6
4,326,636 + AO353_19710 0.25 +0.3
4,326,637 - AO353_19710 0.25 +3.5
4,326,694 + AO353_19710 0.28 +0.0
4,326,695 - AO353_19710 0.28 +0.1
4,326,898 + AO353_19710 0.38 -1.1
4,326,898 + AO353_19710 0.38 +0.5
4,326,899 - AO353_19710 0.38 -2.1
4,326,899 - AO353_19710 0.38 +2.1
4,327,045 + AO353_19710 0.45 -0.7
4,327,045 + AO353_19710 0.45 -0.4
4,327,045 + AO353_19710 0.45 +1.0
4,327,046 - AO353_19710 0.45 -1.1
4,327,046 - AO353_19710 0.45 -0.1

Or see this region's nucleotide sequence