Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18665

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18660 and AO353_18665 are separated by 110 nucleotidesAO353_18665 and AO353_18670 overlap by 1 nucleotides AO353_18660: AO353_18660 - AAA family ATPase, at 4,105,756 to 4,107,231 _18660 AO353_18665: AO353_18665 - histidine kinase, at 4,107,342 to 4,108,559 _18665 AO353_18670: AO353_18670 - Fis family transcriptional regulator, at 4,108,559 to 4,109,959 _18670 Position (kb) 4107 4108 4109Strain fitness (log2 ratio) -2 -1 0 1 2at 4106.537 kb on + strand, within AO353_18660at 4106.537 kb on + strand, within AO353_18660at 4106.538 kb on - strand, within AO353_18660at 4106.538 kb on - strand, within AO353_18660at 4106.538 kb on - strand, within AO353_18660at 4106.538 kb on - strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.665 kb on + strand, within AO353_18660at 4106.666 kb on - strand, within AO353_18660at 4106.666 kb on - strand, within AO353_18660at 4106.666 kb on - strand, within AO353_18660at 4106.666 kb on - strand, within AO353_18660at 4106.668 kb on + strand, within AO353_18660at 4106.669 kb on - strand, within AO353_18660at 4106.725 kb on - strand, within AO353_18660at 4106.929 kb on + strand, within AO353_18660at 4106.929 kb on + strand, within AO353_18660at 4106.929 kb on + strand, within AO353_18660at 4106.961 kb on + strand, within AO353_18660at 4106.961 kb on + strand, within AO353_18660at 4107.064 kb on + strand, within AO353_18660at 4107.064 kb on + strand, within AO353_18660at 4107.065 kb on - strand, within AO353_18660at 4107.159 kb on + strandat 4107.160 kb on - strandat 4107.187 kb on + strandat 4107.187 kb on + strandat 4107.187 kb on + strandat 4107.188 kb on - strandat 4107.188 kb on - strandat 4107.288 kb on + strandat 4107.288 kb on + strandat 4107.312 kb on - strandat 4107.400 kb on + strandat 4107.400 kb on + strandat 4107.400 kb on + strandat 4107.400 kb on + strandat 4107.401 kb on - strandat 4107.477 kb on + strand, within AO353_18665at 4107.477 kb on + strand, within AO353_18665at 4107.477 kb on + strand, within AO353_18665at 4107.477 kb on + strand, within AO353_18665at 4107.477 kb on + strand, within AO353_18665at 4107.477 kb on + strand, within AO353_18665at 4107.477 kb on + strand, within AO353_18665at 4107.478 kb on - strand, within AO353_18665at 4107.478 kb on - strand, within AO353_18665at 4107.478 kb on - strand, within AO353_18665at 4107.478 kb on - strand, within AO353_18665at 4107.478 kb on - strand, within AO353_18665at 4107.834 kb on - strand, within AO353_18665at 4107.834 kb on - strand, within AO353_18665at 4107.960 kb on + strand, within AO353_18665at 4107.960 kb on + strand, within AO353_18665at 4107.960 kb on + strand, within AO353_18665at 4107.960 kb on + strand, within AO353_18665at 4107.960 kb on + strand, within AO353_18665at 4107.960 kb on + strand, within AO353_18665at 4107.961 kb on - strand, within AO353_18665at 4107.961 kb on - strand, within AO353_18665at 4107.961 kb on - strand, within AO353_18665at 4107.961 kb on - strand, within AO353_18665at 4107.961 kb on - strand, within AO353_18665at 4108.214 kb on + strand, within AO353_18665at 4108.215 kb on - strand, within AO353_18665at 4108.215 kb on - strand, within AO353_18665at 4108.215 kb on - strand, within AO353_18665at 4108.305 kb on + strand, within AO353_18665at 4108.305 kb on + strand, within AO353_18665at 4108.305 kb on + strand, within AO353_18665at 4108.305 kb on + strand, within AO353_18665at 4108.306 kb on - strand, within AO353_18665at 4108.306 kb on - strand, within AO353_18665at 4108.306 kb on - strand, within AO353_18665at 4108.306 kb on - strand, within AO353_18665at 4108.306 kb on - strand, within AO353_18665at 4108.306 kb on - strand, within AO353_18665at 4108.404 kb on - strand, within AO353_18665at 4108.404 kb on - strand, within AO353_18665at 4108.435 kb on + strand, within AO353_18665at 4108.435 kb on + strand, within AO353_18665at 4108.575 kb on + strandat 4108.575 kb on + strandat 4108.575 kb on + strandat 4108.618 kb on + strandat 4108.643 kb on + strandat 4108.643 kb on + strandat 4108.643 kb on + strandat 4108.643 kb on + strandat 4108.644 kb on - strandat 4108.857 kb on - strand, within AO353_18670at 4108.857 kb on - strandat 4108.857 kb on - strand, within AO353_18670at 4108.857 kb on - strand, within AO353_18670at 4109.066 kb on + strand, within AO353_18670at 4109.067 kb on - strand, within AO353_18670at 4109.067 kb on - strand, within AO353_18670at 4109.067 kb on - strand, within AO353_18670at 4109.188 kb on + strand, within AO353_18670at 4109.420 kb on + strand, within AO353_18670at 4109.420 kb on + strand, within AO353_18670at 4109.420 kb on + strand, within AO353_18670at 4109.420 kb on + strand, within AO353_18670at 4109.420 kb on + strand, within AO353_18670at 4109.420 kb on + strand, within AO353_18670at 4109.420 kb on + strand, within AO353_18670at 4109.421 kb on - strand, within AO353_18670at 4109.423 kb on + strand, within AO353_18670at 4109.521 kb on + strand, within AO353_18670at 4109.521 kb on + strand, within AO353_18670at 4109.521 kb on + strand, within AO353_18670at 4109.522 kb on - strand, within AO353_18670at 4109.522 kb on - strand, within AO353_18670

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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4,106,537 + AO353_18660 0.53 -0.6
4,106,537 + AO353_18660 0.53 +2.5
4,106,538 - AO353_18660 0.53 +0.2
4,106,538 - AO353_18660 0.53 -0.8
4,106,538 - AO353_18660 0.53 -0.1
4,106,538 - AO353_18660 0.53 +0.4
4,106,665 + AO353_18660 0.62 +1.1
4,106,665 + AO353_18660 0.62 -1.1
4,106,665 + AO353_18660 0.62 +0.4
4,106,665 + AO353_18660 0.62 -0.9
4,106,665 + AO353_18660 0.62 -0.1
4,106,665 + AO353_18660 0.62 -0.9
4,106,665 + AO353_18660 0.62 -0.7
4,106,665 + AO353_18660 0.62 +2.3
4,106,665 + AO353_18660 0.62 -2.6
4,106,665 + AO353_18660 0.62 +2.3
4,106,665 + AO353_18660 0.62 -2.1
4,106,666 - AO353_18660 0.62 +0.4
4,106,666 - AO353_18660 0.62 +0.3
4,106,666 - AO353_18660 0.62 +1.2
4,106,666 - AO353_18660 0.62 -1.1
4,106,668 + AO353_18660 0.62 -1.4
4,106,669 - AO353_18660 0.62 -0.2
4,106,725 - AO353_18660 0.66 +0.4
4,106,929 + AO353_18660 0.79 +0.9
4,106,929 + AO353_18660 0.79 -0.1
4,106,929 + AO353_18660 0.79 -1.1
4,106,961 + AO353_18660 0.82 +1.4
4,106,961 + AO353_18660 0.82 -1.1
4,107,064 + AO353_18660 0.89 +1.8
4,107,064 + AO353_18660 0.89 -1.6
4,107,065 - AO353_18660 0.89 -0.5
4,107,159 + -0.1
4,107,160 - -1.1
4,107,187 + -1.6
4,107,187 + +0.2
4,107,187 + -0.3
4,107,188 - -1.1
4,107,188 - +0.4
4,107,288 + -0.3
4,107,288 + +1.3
4,107,312 - +0.7
4,107,400 + -0.2
4,107,400 + -0.3
4,107,400 + +1.8
4,107,400 + -0.4
4,107,401 - -0.6
4,107,477 + AO353_18665 0.11 +1.0
4,107,477 + AO353_18665 0.11 +0.7
4,107,477 + AO353_18665 0.11 -1.6
4,107,477 + AO353_18665 0.11 +1.1
4,107,477 + AO353_18665 0.11 -1.6
4,107,477 + AO353_18665 0.11 +0.5
4,107,477 + AO353_18665 0.11 +0.4
4,107,478 - AO353_18665 0.11 -0.1
4,107,478 - AO353_18665 0.11 +0.9
4,107,478 - AO353_18665 0.11 +1.3
4,107,478 - AO353_18665 0.11 -1.9
4,107,478 - AO353_18665 0.11 -0.8
4,107,834 - AO353_18665 0.40 +0.5
4,107,834 - AO353_18665 0.40 +1.3
4,107,960 + AO353_18665 0.51 +1.5
4,107,960 + AO353_18665 0.51 -1.2
4,107,960 + AO353_18665 0.51 +0.5
4,107,960 + AO353_18665 0.51 +0.5
4,107,960 + AO353_18665 0.51 -2.1
4,107,960 + AO353_18665 0.51 -0.4
4,107,961 - AO353_18665 0.51 -0.3
4,107,961 - AO353_18665 0.51 +1.9
4,107,961 - AO353_18665 0.51 +0.7
4,107,961 - AO353_18665 0.51 +0.7
4,107,961 - AO353_18665 0.51 +0.9
4,108,214 + AO353_18665 0.72 +1.5
4,108,215 - AO353_18665 0.72 -0.5
4,108,215 - AO353_18665 0.72 -0.1
4,108,215 - AO353_18665 0.72 +2.3
4,108,305 + AO353_18665 0.79 +0.2
4,108,305 + AO353_18665 0.79 -1.8
4,108,305 + AO353_18665 0.79 -1.4
4,108,305 + AO353_18665 0.79 -1.1
4,108,306 - AO353_18665 0.79 +0.6
4,108,306 - AO353_18665 0.79 -0.5
4,108,306 - AO353_18665 0.79 +0.4
4,108,306 - AO353_18665 0.79 +1.2
4,108,306 - AO353_18665 0.79 +0.7
4,108,306 - AO353_18665 0.79 -1.1
4,108,404 - AO353_18665 0.87 +1.5
4,108,404 - AO353_18665 0.87 +0.2
4,108,435 + AO353_18665 0.90 -0.3
4,108,435 + AO353_18665 0.90 +2.5
4,108,575 + -0.6
4,108,575 + +0.5
4,108,575 + -2.1
4,108,618 + -1.6
4,108,643 + -0.1
4,108,643 + +1.8
4,108,643 + +1.1
4,108,643 + -0.5
4,108,644 - -2.1
4,108,857 - AO353_18670 0.21 -0.1
4,108,857 - +1.5
4,108,857 - AO353_18670 0.21 -1.1
4,108,857 - AO353_18670 0.21 -0.4
4,109,066 + AO353_18670 0.36 -0.1
4,109,067 - AO353_18670 0.36 -1.1
4,109,067 - AO353_18670 0.36 -0.3
4,109,067 - AO353_18670 0.36 -0.1
4,109,188 + AO353_18670 0.45 +0.4
4,109,420 + AO353_18670 0.61 -1.1
4,109,420 + AO353_18670 0.61 +2.3
4,109,420 + AO353_18670 0.61 -1.1
4,109,420 + AO353_18670 0.61 -0.6
4,109,420 + AO353_18670 0.61 +0.4
4,109,420 + AO353_18670 0.61 +0.7
4,109,420 + AO353_18670 0.61 +0.0
4,109,421 - AO353_18670 0.62 +0.3
4,109,423 + AO353_18670 0.62 -0.1
4,109,521 + AO353_18670 0.69 +1.1
4,109,521 + AO353_18670 0.69 -0.2
4,109,521 + AO353_18670 0.69 +0.1
4,109,522 - AO353_18670 0.69 -0.5
4,109,522 - AO353_18670 0.69 +0.2

Or see this region's nucleotide sequence