Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16530

Experiment: Ionizing radiation, 126.196 Gy,

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_16525 and AO353_16530 are separated by 17 nucleotidesAO353_16530 and AO353_16535 are separated by 76 nucleotides AO353_16525: AO353_16525 - lipid-A-disaccharide synthase, at 3,668,657 to 3,669,790 _16525 AO353_16530: AO353_16530 - ribonuclease HII, at 3,669,808 to 3,670,428 _16530 AO353_16535: AO353_16535 - DNA polymerase III subunit alpha, at 3,670,505 to 3,674,026 _16535 Position (kb) 3669 3670 3671Strain fitness (log2 ratio) -2 -1 0 1at 3669.797 kb on + strandat 3669.797 kb on + strandat 3669.797 kb on + strandat 3669.797 kb on + strandat 3669.798 kb on - strandat 3669.798 kb on - strandat 3669.798 kb on - strandat 3669.798 kb on - strandat 3669.798 kb on - strandat 3669.798 kb on - strandat 3669.823 kb on - strandat 3669.989 kb on - strand, within AO353_16530at 3670.062 kb on + strand, within AO353_16530at 3670.063 kb on - strand, within AO353_16530at 3670.396 kb on + strandat 3670.396 kb on + strandat 3670.396 kb on + strandat 3670.396 kb on + strandat 3670.397 kb on - strandat 3670.397 kb on - strandat 3670.397 kb on - strandat 3670.397 kb on - strandat 3670.397 kb on - strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.426 kb on + strandat 3670.427 kb on - strandat 3670.427 kb on - strandat 3670.427 kb on - strandat 3670.427 kb on - strandat 3670.461 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
remove
3,669,797 + +0.3
3,669,797 + +0.2
3,669,797 + +0.6
3,669,797 + +1.6
3,669,798 - -0.7
3,669,798 - +1.3
3,669,798 - -0.5
3,669,798 - +0.5
3,669,798 - -0.3
3,669,798 - -1.8
3,669,823 - -0.2
3,669,989 - AO353_16530 0.29 +1.6
3,670,062 + AO353_16530 0.41 -2.1
3,670,063 - AO353_16530 0.41 -1.6
3,670,396 + +0.0
3,670,396 + +1.0
3,670,396 + -0.1
3,670,396 + +0.9
3,670,397 - +0.0
3,670,397 - +0.3
3,670,397 - -0.5
3,670,397 - -0.2
3,670,397 - +1.6
3,670,426 + -2.6
3,670,426 + +1.0
3,670,426 + +1.3
3,670,426 + +0.0
3,670,426 + +1.0
3,670,426 + +1.6
3,670,426 + +0.3
3,670,427 - -1.4
3,670,427 - +1.6
3,670,427 - +1.0
3,670,427 - -1.5
3,670,461 - -1.2

Or see this region's nucleotide sequence