Experiment: Ionizing radiation, 126.196 Gy,
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_14155 and AO353_14160 overlap by 24 nucleotides AO353_14160 and AO353_14165 are separated by 123 nucleotides AO353_14165 and AO353_14170 overlap by 4 nucleotides
AO353_14155: AO353_14155 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,144,642 to 3,145,589
_14155
AO353_14160: AO353_14160 - general secretion pathway protein GspH, at 3,145,566 to 3,146,114
_14160
AO353_14165: AO353_14165 - general secretion pathway protein GspH, at 3,146,238 to 3,146,711
_14165
AO353_14170: AO353_14170 - pilus assembly protein PilV, at 3,146,708 to 3,147,154
_14170
Position (kb)
3145
3146
3147 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3144.610 kb on + strand at 3144.610 kb on + strand at 3145.567 kb on + strand at 3145.567 kb on + strand at 3145.768 kb on - strand, within AO353_14160 at 3145.768 kb on - strand, within AO353_14160 at 3145.768 kb on - strand, within AO353_14160 at 3145.768 kb on - strand, within AO353_14160 at 3145.768 kb on - strand, within AO353_14160 at 3145.869 kb on - strand, within AO353_14160 at 3145.869 kb on - strand, within AO353_14160 at 3146.020 kb on + strand, within AO353_14160 at 3146.020 kb on + strand, within AO353_14160 at 3146.020 kb on + strand, within AO353_14160 at 3146.020 kb on + strand, within AO353_14160 at 3146.020 kb on + strand, within AO353_14160 at 3146.088 kb on + strand at 3146.088 kb on + strand at 3146.088 kb on + strand at 3146.088 kb on + strand at 3146.088 kb on + strand at 3146.088 kb on + strand at 3146.089 kb on - strand at 3146.089 kb on - strand at 3146.089 kb on - strand at 3146.193 kb on + strand at 3146.193 kb on + strand at 3146.193 kb on + strand at 3146.193 kb on + strand at 3146.193 kb on + strand at 3146.193 kb on + strand at 3146.194 kb on - strand at 3146.194 kb on - strand at 3146.194 kb on - strand at 3146.194 kb on - strand at 3146.194 kb on - strand at 3146.201 kb on + strand at 3146.201 kb on + strand at 3146.201 kb on + strand at 3146.201 kb on + strand at 3146.201 kb on + strand at 3146.201 kb on + strand at 3146.201 kb on + strand at 3146.201 kb on + strand at 3146.201 kb on + strand at 3146.201 kb on + strand at 3146.201 kb on + strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.202 kb on - strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.207 kb on + strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.208 kb on - strand at 3146.213 kb on + strand at 3146.214 kb on - strand at 3146.214 kb on - strand at 3146.214 kb on - strand at 3146.249 kb on + strand at 3146.249 kb on + strand at 3146.249 kb on + strand at 3146.250 kb on - strand at 3146.250 kb on - strand at 3146.250 kb on - strand at 3146.250 kb on - strand at 3146.250 kb on - strand at 3146.250 kb on - strand at 3146.250 kb on - strand at 3146.341 kb on + strand, within AO353_14165 at 3146.342 kb on - strand, within AO353_14165 at 3146.342 kb on - strand, within AO353_14165 at 3146.394 kb on + strand, within AO353_14165 at 3146.394 kb on + strand, within AO353_14165 at 3146.395 kb on - strand, within AO353_14165 at 3146.395 kb on - strand at 3146.395 kb on - strand, within AO353_14165 at 3146.395 kb on - strand, within AO353_14165 at 3146.395 kb on - strand, within AO353_14165 at 3146.395 kb on - strand, within AO353_14165 at 3146.395 kb on - strand, within AO353_14165 at 3146.395 kb on - strand, within AO353_14165 at 3146.395 kb on - strand, within AO353_14165 at 3146.484 kb on + strand, within AO353_14165 at 3146.484 kb on + strand, within AO353_14165 at 3146.484 kb on + strand, within AO353_14165 at 3146.484 kb on + strand, within AO353_14165 at 3146.484 kb on + strand, within AO353_14165 at 3146.485 kb on - strand, within AO353_14165 at 3146.485 kb on - strand, within AO353_14165 at 3146.485 kb on - strand, within AO353_14165 at 3146.485 kb on - strand, within AO353_14165 at 3146.485 kb on - strand, within AO353_14165 at 3146.485 kb on - strand, within AO353_14165 at 3146.512 kb on + strand, within AO353_14165 at 3146.513 kb on - strand, within AO353_14165 at 3146.513 kb on - strand, within AO353_14165 at 3146.513 kb on - strand, within AO353_14165 at 3146.513 kb on - strand, within AO353_14165 at 3146.513 kb on - strand, within AO353_14165 at 3146.513 kb on - strand, within AO353_14165 at 3146.513 kb on - strand, within AO353_14165 at 3146.513 kb on - strand, within AO353_14165 at 3146.634 kb on + strand, within AO353_14165 at 3146.634 kb on + strand, within AO353_14165 at 3146.634 kb on + strand, within AO353_14165 at 3146.634 kb on + strand, within AO353_14165 at 3146.634 kb on + strand, within AO353_14165 at 3146.634 kb on + strand, within AO353_14165 at 3146.634 kb on + strand, within AO353_14165 at 3146.634 kb on + strand, within AO353_14165 at 3146.634 kb on + strand, within AO353_14165 at 3146.635 kb on - strand, within AO353_14165 at 3146.635 kb on - strand, within AO353_14165 at 3146.635 kb on - strand, within AO353_14165 at 3146.635 kb on - strand, within AO353_14165 at 3146.635 kb on - strand, within AO353_14165 at 3146.635 kb on - strand, within AO353_14165 at 3146.635 kb on - strand, within AO353_14165 at 3146.635 kb on - strand, within AO353_14165 at 3146.635 kb on - strand, within AO353_14165 at 3146.638 kb on + strand, within AO353_14165 at 3146.638 kb on + strand, within AO353_14165 at 3146.638 kb on + strand, within AO353_14165 at 3146.638 kb on + strand, within AO353_14165 at 3146.639 kb on - strand, within AO353_14165 at 3146.639 kb on - strand, within AO353_14165 at 3146.674 kb on + strand at 3146.675 kb on - strand at 3146.675 kb on - strand at 3146.791 kb on - strand, within AO353_14170 at 3146.828 kb on + strand, within AO353_14170 at 3146.828 kb on + strand, within AO353_14170 at 3146.828 kb on + strand, within AO353_14170 at 3146.828 kb on + strand, within AO353_14170 at 3146.829 kb on - strand, within AO353_14170 at 3146.829 kb on - strand, within AO353_14170 at 3146.829 kb on - strand, within AO353_14170 at 3146.874 kb on - strand, within AO353_14170 at 3146.915 kb on + strand, within AO353_14170 at 3146.915 kb on + strand, within AO353_14170 at 3146.916 kb on - strand, within AO353_14170 at 3146.972 kb on + strand, within AO353_14170 at 3146.972 kb on + strand, within AO353_14170 at 3146.973 kb on - strand, within AO353_14170 at 3146.973 kb on - strand, within AO353_14170 at 3146.973 kb on - strand, within AO353_14170 at 3146.989 kb on + strand, within AO353_14170 at 3147.028 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.047 kb on + strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.048 kb on - strand, within AO353_14170 at 3147.049 kb on + strand, within AO353_14170 at 3147.049 kb on + strand, within AO353_14170 at 3147.049 kb on + strand, within AO353_14170 at 3147.049 kb on + strand, within AO353_14170 at 3147.049 kb on + strand, within AO353_14170 at 3147.049 kb on + strand, within AO353_14170 at 3147.049 kb on + strand, within AO353_14170 at 3147.050 kb on - strand, within AO353_14170 at 3147.050 kb on - strand, within AO353_14170 at 3147.050 kb on - strand, within AO353_14170 at 3147.050 kb on - strand, within AO353_14170 at 3147.050 kb on - strand, within AO353_14170 at 3147.050 kb on - strand, within AO353_14170 at 3147.061 kb on + strand, within AO353_14170 at 3147.062 kb on - strand, within AO353_14170 at 3147.062 kb on - strand, within AO353_14170 at 3147.062 kb on - strand, within AO353_14170 at 3147.091 kb on + strand, within AO353_14170 at 3147.092 kb on - strand, within AO353_14170 at 3147.092 kb on - strand, within AO353_14170
Per-strain Table
Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy, remove 3,144,610 + -1.3 3,144,610 + +0.1 3,145,567 + -0.9 3,145,567 + -1.5 3,145,768 - AO353_14160 0.37 +0.5 3,145,768 - AO353_14160 0.37 +0.1 3,145,768 - AO353_14160 0.37 +0.1 3,145,768 - AO353_14160 0.37 +0.8 3,145,768 - AO353_14160 0.37 +1.8 3,145,869 - AO353_14160 0.55 -0.0 3,145,869 - AO353_14160 0.55 +0.1 3,146,020 + AO353_14160 0.83 -2.1 3,146,020 + AO353_14160 0.83 -0.8 3,146,020 + AO353_14160 0.83 +2.1 3,146,020 + AO353_14160 0.83 +1.4 3,146,020 + AO353_14160 0.83 +0.1 3,146,088 + +0.5 3,146,088 + +2.4 3,146,088 + +0.5 3,146,088 + +0.2 3,146,088 + -0.9 3,146,088 + -0.5 3,146,089 - -0.5 3,146,089 - -1.3 3,146,089 - +0.2 3,146,193 + -0.9 3,146,193 + -1.5 3,146,193 + -0.4 3,146,193 + +0.3 3,146,193 + -0.4 3,146,193 + +1.0 3,146,194 - +0.9 3,146,194 - +0.1 3,146,194 - +0.8 3,146,194 - +2.1 3,146,194 - +0.3 3,146,201 + +2.6 3,146,201 + -0.1 3,146,201 + -1.5 3,146,201 + -0.2 3,146,201 + -0.7 3,146,201 + -0.4 3,146,201 + +1.1 3,146,201 + -0.7 3,146,201 + +0.1 3,146,201 + +0.1 3,146,201 + -1.5 3,146,202 - +0.7 3,146,202 - +1.1 3,146,202 - -0.8 3,146,202 - +1.1 3,146,202 - -1.5 3,146,202 - +2.5 3,146,202 - +0.2 3,146,202 - +0.1 3,146,202 - -1.9 3,146,202 - -0.9 3,146,202 - -0.6 3,146,202 - -0.4 3,146,207 + +0.1 3,146,207 + +0.4 3,146,207 + -1.8 3,146,207 + -1.5 3,146,207 + -0.9 3,146,207 + +3.2 3,146,207 + -0.3 3,146,207 + -0.8 3,146,207 + -1.1 3,146,207 + +0.8 3,146,207 + -1.5 3,146,207 + +0.6 3,146,207 + +0.1 3,146,207 + -0.6 3,146,207 + -1.5 3,146,207 + -0.6 3,146,207 + -2.9 3,146,207 + -0.5 3,146,207 + -0.1 3,146,207 + -0.7 3,146,207 + -2.1 3,146,207 + +0.2 3,146,207 + -0.6 3,146,207 + +0.1 3,146,207 + -0.8 3,146,207 + +0.1 3,146,207 + -0.7 3,146,207 + +0.6 3,146,207 + +1.1 3,146,208 - -0.1 3,146,208 - +0.1 3,146,208 - +0.4 3,146,208 - +1.6 3,146,208 - +1.1 3,146,208 - +0.6 3,146,208 - -0.3 3,146,208 - -0.4 3,146,208 - -0.2 3,146,208 - -1.5 3,146,208 - -1.3 3,146,208 - -0.5 3,146,208 - -0.8 3,146,208 - +2.5 3,146,208 - +1.4 3,146,208 - +0.1 3,146,208 - -0.9 3,146,208 - +1.1 3,146,208 - +2.9 3,146,208 - +2.1 3,146,208 - -0.6 3,146,208 - -1.3 3,146,213 + +0.2 3,146,214 - -0.1 3,146,214 - +0.5 3,146,214 - -1.1 3,146,249 + -2.5 3,146,249 + -0.4 3,146,249 + +0.1 3,146,250 - +0.1 3,146,250 - -0.3 3,146,250 - -0.4 3,146,250 - +0.6 3,146,250 - -0.4 3,146,250 - -0.5 3,146,250 - -0.9 3,146,341 + AO353_14165 0.22 -2.5 3,146,342 - AO353_14165 0.22 +0.4 3,146,342 - AO353_14165 0.22 +1.6 3,146,394 + AO353_14165 0.33 -0.3 3,146,394 + AO353_14165 0.33 +1.1 3,146,395 - AO353_14165 0.33 -2.4 3,146,395 - +0.5 3,146,395 - AO353_14165 0.33 -0.9 3,146,395 - AO353_14165 0.33 -1.1 3,146,395 - AO353_14165 0.33 +1.1 3,146,395 - AO353_14165 0.33 -0.3 3,146,395 - AO353_14165 0.33 +1.1 3,146,395 - AO353_14165 0.33 +1.1 3,146,395 - AO353_14165 0.33 +0.9 3,146,484 + AO353_14165 0.52 +0.3 3,146,484 + AO353_14165 0.52 +0.1 3,146,484 + AO353_14165 0.52 +0.1 3,146,484 + AO353_14165 0.52 -0.9 3,146,484 + AO353_14165 0.52 -1.5 3,146,485 - AO353_14165 0.52 -1.1 3,146,485 - AO353_14165 0.52 -2.5 3,146,485 - AO353_14165 0.52 -1.9 3,146,485 - AO353_14165 0.52 -0.9 3,146,485 - AO353_14165 0.52 +0.1 3,146,485 - AO353_14165 0.52 -0.2 3,146,512 + AO353_14165 0.58 +0.6 3,146,513 - AO353_14165 0.58 -0.2 3,146,513 - AO353_14165 0.58 -1.4 3,146,513 - AO353_14165 0.58 +0.2 3,146,513 - AO353_14165 0.58 +0.6 3,146,513 - AO353_14165 0.58 -0.4 3,146,513 - AO353_14165 0.58 +0.4 3,146,513 - AO353_14165 0.58 -0.9 3,146,513 - AO353_14165 0.58 +0.8 3,146,634 + AO353_14165 0.84 -0.9 3,146,634 + AO353_14165 0.84 -2.1 3,146,634 + AO353_14165 0.84 -1.1 3,146,634 + AO353_14165 0.84 -1.9 3,146,634 + AO353_14165 0.84 -0.2 3,146,634 + AO353_14165 0.84 +0.5 3,146,634 + AO353_14165 0.84 +0.1 3,146,634 + AO353_14165 0.84 -0.2 3,146,634 + AO353_14165 0.84 +0.5 3,146,635 - AO353_14165 0.84 +0.1 3,146,635 - AO353_14165 0.84 -0.5 3,146,635 - AO353_14165 0.84 -1.3 3,146,635 - AO353_14165 0.84 -0.5 3,146,635 - AO353_14165 0.84 -0.9 3,146,635 - AO353_14165 0.84 -0.1 3,146,635 - AO353_14165 0.84 -2.9 3,146,635 - AO353_14165 0.84 +2.9 3,146,635 - AO353_14165 0.84 +0.5 3,146,638 + AO353_14165 0.84 -0.4 3,146,638 + AO353_14165 0.84 +0.1 3,146,638 + AO353_14165 0.84 +0.1 3,146,638 + AO353_14165 0.84 +0.6 3,146,639 - AO353_14165 0.85 +1.9 3,146,639 - AO353_14165 0.85 -2.3 3,146,674 + +1.4 3,146,675 - +0.3 3,146,675 - -0.5 3,146,791 - AO353_14170 0.19 +0.7 3,146,828 + AO353_14170 0.27 +0.5 3,146,828 + AO353_14170 0.27 -0.7 3,146,828 + AO353_14170 0.27 -0.5 3,146,828 + AO353_14170 0.27 -0.9 3,146,829 - AO353_14170 0.27 -1.1 3,146,829 - AO353_14170 0.27 -0.5 3,146,829 - AO353_14170 0.27 -1.1 3,146,874 - AO353_14170 0.37 +1.8 3,146,915 + AO353_14170 0.46 +0.1 3,146,915 + AO353_14170 0.46 -2.3 3,146,916 - AO353_14170 0.47 -0.4 3,146,972 + AO353_14170 0.59 +0.6 3,146,972 + AO353_14170 0.59 +0.1 3,146,973 - AO353_14170 0.59 +1.6 3,146,973 - AO353_14170 0.59 -1.3 3,146,973 - AO353_14170 0.59 -1.5 3,146,989 + AO353_14170 0.63 -0.4 3,147,028 + AO353_14170 0.72 -1.9 3,147,047 + AO353_14170 0.76 -1.1 3,147,047 + AO353_14170 0.76 -0.9 3,147,047 + AO353_14170 0.76 +0.2 3,147,047 + AO353_14170 0.76 -1.9 3,147,047 + AO353_14170 0.76 -0.1 3,147,047 + AO353_14170 0.76 +0.5 3,147,047 + AO353_14170 0.76 +0.6 3,147,047 + AO353_14170 0.76 +0.1 3,147,047 + AO353_14170 0.76 +0.1 3,147,047 + AO353_14170 0.76 +1.1 3,147,047 + AO353_14170 0.76 +0.5 3,147,047 + AO353_14170 0.76 -0.4 3,147,047 + AO353_14170 0.76 -0.5 3,147,047 + AO353_14170 0.76 -0.3 3,147,048 - AO353_14170 0.76 -1.5 3,147,048 - AO353_14170 0.76 -0.6 3,147,048 - AO353_14170 0.76 +1.1 3,147,048 - AO353_14170 0.76 +1.6 3,147,048 - AO353_14170 0.76 +0.1 3,147,048 - AO353_14170 0.76 -0.9 3,147,048 - AO353_14170 0.76 +0.6 3,147,048 - AO353_14170 0.76 -0.5 3,147,048 - AO353_14170 0.76 +1.5 3,147,048 - AO353_14170 0.76 -0.5 3,147,048 - AO353_14170 0.76 -1.2 3,147,048 - AO353_14170 0.76 +0.1 3,147,049 + AO353_14170 0.76 +0.4 3,147,049 + AO353_14170 0.76 -2.5 3,147,049 + AO353_14170 0.76 +0.2 3,147,049 + AO353_14170 0.76 -0.8 3,147,049 + AO353_14170 0.76 -0.3 3,147,049 + AO353_14170 0.76 -1.6 3,147,049 + AO353_14170 0.76 +0.1 3,147,050 - AO353_14170 0.77 -1.2 3,147,050 - AO353_14170 0.77 -0.1 3,147,050 - AO353_14170 0.77 -0.0 3,147,050 - AO353_14170 0.77 +0.1 3,147,050 - AO353_14170 0.77 -0.4 3,147,050 - AO353_14170 0.77 -0.9 3,147,061 + AO353_14170 0.79 -1.5 3,147,062 - AO353_14170 0.79 -0.7 3,147,062 - AO353_14170 0.79 +0.9 3,147,062 - AO353_14170 0.79 -0.7 3,147,091 + AO353_14170 0.86 -0.4 3,147,092 - AO353_14170 0.86 +3.1 3,147,092 - AO353_14170 0.86 -0.9
Or see this region's nucleotide sequence