Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14160

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14155 and AO353_14160 overlap by 24 nucleotidesAO353_14160 and AO353_14165 are separated by 123 nucleotidesAO353_14165 and AO353_14170 overlap by 4 nucleotides AO353_14155: AO353_14155 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,144,642 to 3,145,589 _14155 AO353_14160: AO353_14160 - general secretion pathway protein GspH, at 3,145,566 to 3,146,114 _14160 AO353_14165: AO353_14165 - general secretion pathway protein GspH, at 3,146,238 to 3,146,711 _14165 AO353_14170: AO353_14170 - pilus assembly protein PilV, at 3,146,708 to 3,147,154 _14170 Position (kb) 3145 3146 3147Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3144.610 kb on + strandat 3144.610 kb on + strandat 3145.567 kb on + strandat 3145.567 kb on + strandat 3145.768 kb on - strand, within AO353_14160at 3145.768 kb on - strand, within AO353_14160at 3145.768 kb on - strand, within AO353_14160at 3145.768 kb on - strand, within AO353_14160at 3145.768 kb on - strand, within AO353_14160at 3145.869 kb on - strand, within AO353_14160at 3145.869 kb on - strand, within AO353_14160at 3146.020 kb on + strand, within AO353_14160at 3146.020 kb on + strand, within AO353_14160at 3146.020 kb on + strand, within AO353_14160at 3146.020 kb on + strand, within AO353_14160at 3146.020 kb on + strand, within AO353_14160at 3146.088 kb on + strandat 3146.088 kb on + strandat 3146.088 kb on + strandat 3146.088 kb on + strandat 3146.088 kb on + strandat 3146.088 kb on + strandat 3146.089 kb on - strandat 3146.089 kb on - strandat 3146.089 kb on - strandat 3146.193 kb on + strandat 3146.193 kb on + strandat 3146.193 kb on + strandat 3146.193 kb on + strandat 3146.193 kb on + strandat 3146.193 kb on + strandat 3146.194 kb on - strandat 3146.194 kb on - strandat 3146.194 kb on - strandat 3146.194 kb on - strandat 3146.194 kb on - strandat 3146.201 kb on + strandat 3146.201 kb on + strandat 3146.201 kb on + strandat 3146.201 kb on + strandat 3146.201 kb on + strandat 3146.201 kb on + strandat 3146.201 kb on + strandat 3146.201 kb on + strandat 3146.201 kb on + strandat 3146.201 kb on + strandat 3146.201 kb on + strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.202 kb on - strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.207 kb on + strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.208 kb on - strandat 3146.213 kb on + strandat 3146.214 kb on - strandat 3146.214 kb on - strandat 3146.214 kb on - strandat 3146.249 kb on + strandat 3146.249 kb on + strandat 3146.249 kb on + strandat 3146.250 kb on - strandat 3146.250 kb on - strandat 3146.250 kb on - strandat 3146.250 kb on - strandat 3146.250 kb on - strandat 3146.250 kb on - strandat 3146.250 kb on - strandat 3146.341 kb on + strand, within AO353_14165at 3146.342 kb on - strand, within AO353_14165at 3146.342 kb on - strand, within AO353_14165at 3146.394 kb on + strand, within AO353_14165at 3146.394 kb on + strand, within AO353_14165at 3146.395 kb on - strand, within AO353_14165at 3146.395 kb on - strandat 3146.395 kb on - strand, within AO353_14165at 3146.395 kb on - strand, within AO353_14165at 3146.395 kb on - strand, within AO353_14165at 3146.395 kb on - strand, within AO353_14165at 3146.395 kb on - strand, within AO353_14165at 3146.395 kb on - strand, within AO353_14165at 3146.395 kb on - strand, within AO353_14165at 3146.484 kb on + strand, within AO353_14165at 3146.484 kb on + strand, within AO353_14165at 3146.484 kb on + strand, within AO353_14165at 3146.484 kb on + strand, within AO353_14165at 3146.484 kb on + strand, within AO353_14165at 3146.485 kb on - strand, within AO353_14165at 3146.485 kb on - strand, within AO353_14165at 3146.485 kb on - strand, within AO353_14165at 3146.485 kb on - strand, within AO353_14165at 3146.485 kb on - strand, within AO353_14165at 3146.485 kb on - strand, within AO353_14165at 3146.512 kb on + strand, within AO353_14165at 3146.513 kb on - strand, within AO353_14165at 3146.513 kb on - strand, within AO353_14165at 3146.513 kb on - strand, within AO353_14165at 3146.513 kb on - strand, within AO353_14165at 3146.513 kb on - strand, within AO353_14165at 3146.513 kb on - strand, within AO353_14165at 3146.513 kb on - strand, within AO353_14165at 3146.513 kb on - strand, within AO353_14165at 3146.634 kb on + strand, within AO353_14165at 3146.634 kb on + strand, within AO353_14165at 3146.634 kb on + strand, within AO353_14165at 3146.634 kb on + strand, within AO353_14165at 3146.634 kb on + strand, within AO353_14165at 3146.634 kb on + strand, within AO353_14165at 3146.634 kb on + strand, within AO353_14165at 3146.634 kb on + strand, within AO353_14165at 3146.634 kb on + strand, within AO353_14165at 3146.635 kb on - strand, within AO353_14165at 3146.635 kb on - strand, within AO353_14165at 3146.635 kb on - strand, within AO353_14165at 3146.635 kb on - strand, within AO353_14165at 3146.635 kb on - strand, within AO353_14165at 3146.635 kb on - strand, within AO353_14165at 3146.635 kb on - strand, within AO353_14165at 3146.635 kb on - strand, within AO353_14165at 3146.635 kb on - strand, within AO353_14165at 3146.638 kb on + strand, within AO353_14165at 3146.638 kb on + strand, within AO353_14165at 3146.638 kb on + strand, within AO353_14165at 3146.638 kb on + strand, within AO353_14165at 3146.639 kb on - strand, within AO353_14165at 3146.639 kb on - strand, within AO353_14165at 3146.674 kb on + strandat 3146.675 kb on - strandat 3146.675 kb on - strandat 3146.791 kb on - strand, within AO353_14170at 3146.828 kb on + strand, within AO353_14170at 3146.828 kb on + strand, within AO353_14170at 3146.828 kb on + strand, within AO353_14170at 3146.828 kb on + strand, within AO353_14170at 3146.829 kb on - strand, within AO353_14170at 3146.829 kb on - strand, within AO353_14170at 3146.829 kb on - strand, within AO353_14170at 3146.874 kb on - strand, within AO353_14170at 3146.915 kb on + strand, within AO353_14170at 3146.915 kb on + strand, within AO353_14170at 3146.916 kb on - strand, within AO353_14170at 3146.972 kb on + strand, within AO353_14170at 3146.972 kb on + strand, within AO353_14170at 3146.973 kb on - strand, within AO353_14170at 3146.973 kb on - strand, within AO353_14170at 3146.973 kb on - strand, within AO353_14170at 3146.989 kb on + strand, within AO353_14170at 3147.028 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.047 kb on + strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.048 kb on - strand, within AO353_14170at 3147.049 kb on + strand, within AO353_14170at 3147.049 kb on + strand, within AO353_14170at 3147.049 kb on + strand, within AO353_14170at 3147.049 kb on + strand, within AO353_14170at 3147.049 kb on + strand, within AO353_14170at 3147.049 kb on + strand, within AO353_14170at 3147.049 kb on + strand, within AO353_14170at 3147.050 kb on - strand, within AO353_14170at 3147.050 kb on - strand, within AO353_14170at 3147.050 kb on - strand, within AO353_14170at 3147.050 kb on - strand, within AO353_14170at 3147.050 kb on - strand, within AO353_14170at 3147.050 kb on - strand, within AO353_14170at 3147.061 kb on + strand, within AO353_14170at 3147.062 kb on - strand, within AO353_14170at 3147.062 kb on - strand, within AO353_14170at 3147.062 kb on - strand, within AO353_14170at 3147.091 kb on + strand, within AO353_14170at 3147.092 kb on - strand, within AO353_14170at 3147.092 kb on - strand, within AO353_14170

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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3,144,610 + -1.3
3,144,610 + +0.1
3,145,567 + -0.9
3,145,567 + -1.5
3,145,768 - AO353_14160 0.37 +0.5
3,145,768 - AO353_14160 0.37 +0.1
3,145,768 - AO353_14160 0.37 +0.1
3,145,768 - AO353_14160 0.37 +0.8
3,145,768 - AO353_14160 0.37 +1.8
3,145,869 - AO353_14160 0.55 -0.0
3,145,869 - AO353_14160 0.55 +0.1
3,146,020 + AO353_14160 0.83 -2.1
3,146,020 + AO353_14160 0.83 -0.8
3,146,020 + AO353_14160 0.83 +2.1
3,146,020 + AO353_14160 0.83 +1.4
3,146,020 + AO353_14160 0.83 +0.1
3,146,088 + +0.5
3,146,088 + +2.4
3,146,088 + +0.5
3,146,088 + +0.2
3,146,088 + -0.9
3,146,088 + -0.5
3,146,089 - -0.5
3,146,089 - -1.3
3,146,089 - +0.2
3,146,193 + -0.9
3,146,193 + -1.5
3,146,193 + -0.4
3,146,193 + +0.3
3,146,193 + -0.4
3,146,193 + +1.0
3,146,194 - +0.9
3,146,194 - +0.1
3,146,194 - +0.8
3,146,194 - +2.1
3,146,194 - +0.3
3,146,201 + +2.6
3,146,201 + -0.1
3,146,201 + -1.5
3,146,201 + -0.2
3,146,201 + -0.7
3,146,201 + -0.4
3,146,201 + +1.1
3,146,201 + -0.7
3,146,201 + +0.1
3,146,201 + +0.1
3,146,201 + -1.5
3,146,202 - +0.7
3,146,202 - +1.1
3,146,202 - -0.8
3,146,202 - +1.1
3,146,202 - -1.5
3,146,202 - +2.5
3,146,202 - +0.2
3,146,202 - +0.1
3,146,202 - -1.9
3,146,202 - -0.9
3,146,202 - -0.6
3,146,202 - -0.4
3,146,207 + +0.1
3,146,207 + +0.4
3,146,207 + -1.8
3,146,207 + -1.5
3,146,207 + -0.9
3,146,207 + +3.2
3,146,207 + -0.3
3,146,207 + -0.8
3,146,207 + -1.1
3,146,207 + +0.8
3,146,207 + -1.5
3,146,207 + +0.6
3,146,207 + +0.1
3,146,207 + -0.6
3,146,207 + -1.5
3,146,207 + -0.6
3,146,207 + -2.9
3,146,207 + -0.5
3,146,207 + -0.1
3,146,207 + -0.7
3,146,207 + -2.1
3,146,207 + +0.2
3,146,207 + -0.6
3,146,207 + +0.1
3,146,207 + -0.8
3,146,207 + +0.1
3,146,207 + -0.7
3,146,207 + +0.6
3,146,207 + +1.1
3,146,208 - -0.1
3,146,208 - +0.1
3,146,208 - +0.4
3,146,208 - +1.6
3,146,208 - +1.1
3,146,208 - +0.6
3,146,208 - -0.3
3,146,208 - -0.4
3,146,208 - -0.2
3,146,208 - -1.5
3,146,208 - -1.3
3,146,208 - -0.5
3,146,208 - -0.8
3,146,208 - +2.5
3,146,208 - +1.4
3,146,208 - +0.1
3,146,208 - -0.9
3,146,208 - +1.1
3,146,208 - +2.9
3,146,208 - +2.1
3,146,208 - -0.6
3,146,208 - -1.3
3,146,213 + +0.2
3,146,214 - -0.1
3,146,214 - +0.5
3,146,214 - -1.1
3,146,249 + -2.5
3,146,249 + -0.4
3,146,249 + +0.1
3,146,250 - +0.1
3,146,250 - -0.3
3,146,250 - -0.4
3,146,250 - +0.6
3,146,250 - -0.4
3,146,250 - -0.5
3,146,250 - -0.9
3,146,341 + AO353_14165 0.22 -2.5
3,146,342 - AO353_14165 0.22 +0.4
3,146,342 - AO353_14165 0.22 +1.6
3,146,394 + AO353_14165 0.33 -0.3
3,146,394 + AO353_14165 0.33 +1.1
3,146,395 - AO353_14165 0.33 -2.4
3,146,395 - +0.5
3,146,395 - AO353_14165 0.33 -0.9
3,146,395 - AO353_14165 0.33 -1.1
3,146,395 - AO353_14165 0.33 +1.1
3,146,395 - AO353_14165 0.33 -0.3
3,146,395 - AO353_14165 0.33 +1.1
3,146,395 - AO353_14165 0.33 +1.1
3,146,395 - AO353_14165 0.33 +0.9
3,146,484 + AO353_14165 0.52 +0.3
3,146,484 + AO353_14165 0.52 +0.1
3,146,484 + AO353_14165 0.52 +0.1
3,146,484 + AO353_14165 0.52 -0.9
3,146,484 + AO353_14165 0.52 -1.5
3,146,485 - AO353_14165 0.52 -1.1
3,146,485 - AO353_14165 0.52 -2.5
3,146,485 - AO353_14165 0.52 -1.9
3,146,485 - AO353_14165 0.52 -0.9
3,146,485 - AO353_14165 0.52 +0.1
3,146,485 - AO353_14165 0.52 -0.2
3,146,512 + AO353_14165 0.58 +0.6
3,146,513 - AO353_14165 0.58 -0.2
3,146,513 - AO353_14165 0.58 -1.4
3,146,513 - AO353_14165 0.58 +0.2
3,146,513 - AO353_14165 0.58 +0.6
3,146,513 - AO353_14165 0.58 -0.4
3,146,513 - AO353_14165 0.58 +0.4
3,146,513 - AO353_14165 0.58 -0.9
3,146,513 - AO353_14165 0.58 +0.8
3,146,634 + AO353_14165 0.84 -0.9
3,146,634 + AO353_14165 0.84 -2.1
3,146,634 + AO353_14165 0.84 -1.1
3,146,634 + AO353_14165 0.84 -1.9
3,146,634 + AO353_14165 0.84 -0.2
3,146,634 + AO353_14165 0.84 +0.5
3,146,634 + AO353_14165 0.84 +0.1
3,146,634 + AO353_14165 0.84 -0.2
3,146,634 + AO353_14165 0.84 +0.5
3,146,635 - AO353_14165 0.84 +0.1
3,146,635 - AO353_14165 0.84 -0.5
3,146,635 - AO353_14165 0.84 -1.3
3,146,635 - AO353_14165 0.84 -0.5
3,146,635 - AO353_14165 0.84 -0.9
3,146,635 - AO353_14165 0.84 -0.1
3,146,635 - AO353_14165 0.84 -2.9
3,146,635 - AO353_14165 0.84 +2.9
3,146,635 - AO353_14165 0.84 +0.5
3,146,638 + AO353_14165 0.84 -0.4
3,146,638 + AO353_14165 0.84 +0.1
3,146,638 + AO353_14165 0.84 +0.1
3,146,638 + AO353_14165 0.84 +0.6
3,146,639 - AO353_14165 0.85 +1.9
3,146,639 - AO353_14165 0.85 -2.3
3,146,674 + +1.4
3,146,675 - +0.3
3,146,675 - -0.5
3,146,791 - AO353_14170 0.19 +0.7
3,146,828 + AO353_14170 0.27 +0.5
3,146,828 + AO353_14170 0.27 -0.7
3,146,828 + AO353_14170 0.27 -0.5
3,146,828 + AO353_14170 0.27 -0.9
3,146,829 - AO353_14170 0.27 -1.1
3,146,829 - AO353_14170 0.27 -0.5
3,146,829 - AO353_14170 0.27 -1.1
3,146,874 - AO353_14170 0.37 +1.8
3,146,915 + AO353_14170 0.46 +0.1
3,146,915 + AO353_14170 0.46 -2.3
3,146,916 - AO353_14170 0.47 -0.4
3,146,972 + AO353_14170 0.59 +0.6
3,146,972 + AO353_14170 0.59 +0.1
3,146,973 - AO353_14170 0.59 +1.6
3,146,973 - AO353_14170 0.59 -1.3
3,146,973 - AO353_14170 0.59 -1.5
3,146,989 + AO353_14170 0.63 -0.4
3,147,028 + AO353_14170 0.72 -1.9
3,147,047 + AO353_14170 0.76 -1.1
3,147,047 + AO353_14170 0.76 -0.9
3,147,047 + AO353_14170 0.76 +0.2
3,147,047 + AO353_14170 0.76 -1.9
3,147,047 + AO353_14170 0.76 -0.1
3,147,047 + AO353_14170 0.76 +0.5
3,147,047 + AO353_14170 0.76 +0.6
3,147,047 + AO353_14170 0.76 +0.1
3,147,047 + AO353_14170 0.76 +0.1
3,147,047 + AO353_14170 0.76 +1.1
3,147,047 + AO353_14170 0.76 +0.5
3,147,047 + AO353_14170 0.76 -0.4
3,147,047 + AO353_14170 0.76 -0.5
3,147,047 + AO353_14170 0.76 -0.3
3,147,048 - AO353_14170 0.76 -1.5
3,147,048 - AO353_14170 0.76 -0.6
3,147,048 - AO353_14170 0.76 +1.1
3,147,048 - AO353_14170 0.76 +1.6
3,147,048 - AO353_14170 0.76 +0.1
3,147,048 - AO353_14170 0.76 -0.9
3,147,048 - AO353_14170 0.76 +0.6
3,147,048 - AO353_14170 0.76 -0.5
3,147,048 - AO353_14170 0.76 +1.5
3,147,048 - AO353_14170 0.76 -0.5
3,147,048 - AO353_14170 0.76 -1.2
3,147,048 - AO353_14170 0.76 +0.1
3,147,049 + AO353_14170 0.76 +0.4
3,147,049 + AO353_14170 0.76 -2.5
3,147,049 + AO353_14170 0.76 +0.2
3,147,049 + AO353_14170 0.76 -0.8
3,147,049 + AO353_14170 0.76 -0.3
3,147,049 + AO353_14170 0.76 -1.6
3,147,049 + AO353_14170 0.76 +0.1
3,147,050 - AO353_14170 0.77 -1.2
3,147,050 - AO353_14170 0.77 -0.1
3,147,050 - AO353_14170 0.77 -0.0
3,147,050 - AO353_14170 0.77 +0.1
3,147,050 - AO353_14170 0.77 -0.4
3,147,050 - AO353_14170 0.77 -0.9
3,147,061 + AO353_14170 0.79 -1.5
3,147,062 - AO353_14170 0.79 -0.7
3,147,062 - AO353_14170 0.79 +0.9
3,147,062 - AO353_14170 0.79 -0.7
3,147,091 + AO353_14170 0.86 -0.4
3,147,092 - AO353_14170 0.86 +3.1
3,147,092 - AO353_14170 0.86 -0.9

Or see this region's nucleotide sequence