Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13600

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13595 and AO353_13600 overlap by 8 nucleotidesAO353_13600 and AO353_13605 are separated by 131 nucleotides AO353_13595: AO353_13595 - cobalt-precorrin-6A synthase, at 3,017,893 to 3,018,990 _13595 AO353_13600: AO353_13600 - precorrin-6Y C5,15-methyltransferase, at 3,018,983 to 3,020,194 _13600 AO353_13605: AO353_13605 - oxidoreductase, at 3,020,326 to 3,021,633 _13605 Position (kb) 3018 3019 3020 3021Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3018.166 kb on + strand, within AO353_13595at 3018.166 kb on + strand, within AO353_13595at 3018.166 kb on + strand, within AO353_13595at 3018.167 kb on - strand, within AO353_13595at 3018.167 kb on - strand, within AO353_13595at 3018.167 kb on - strand, within AO353_13595at 3018.174 kb on + strand, within AO353_13595at 3018.311 kb on + strand, within AO353_13595at 3018.312 kb on - strand, within AO353_13595at 3018.312 kb on - strand, within AO353_13595at 3018.312 kb on - strand, within AO353_13595at 3018.416 kb on + strand, within AO353_13595at 3018.416 kb on + strand, within AO353_13595at 3018.416 kb on + strand, within AO353_13595at 3018.416 kb on + strand, within AO353_13595at 3018.416 kb on + strand, within AO353_13595at 3018.416 kb on + strand, within AO353_13595at 3018.417 kb on - strand, within AO353_13595at 3018.417 kb on - strand, within AO353_13595at 3018.481 kb on - strand, within AO353_13595at 3018.583 kb on + strand, within AO353_13595at 3018.584 kb on - strand, within AO353_13595at 3018.584 kb on - strand, within AO353_13595at 3018.584 kb on - strand, within AO353_13595at 3018.647 kb on - strand, within AO353_13595at 3018.731 kb on + strand, within AO353_13595at 3018.731 kb on + strand, within AO353_13595at 3018.731 kb on + strand, within AO353_13595at 3018.731 kb on + strand, within AO353_13595at 3018.732 kb on - strand, within AO353_13595at 3018.732 kb on - strand, within AO353_13595at 3018.732 kb on - strand, within AO353_13595at 3018.732 kb on - strand, within AO353_13595at 3018.732 kb on - strand, within AO353_13595at 3019.001 kb on - strandat 3019.075 kb on + strandat 3019.238 kb on - strand, within AO353_13600at 3019.238 kb on - strand, within AO353_13600at 3019.238 kb on - strand, within AO353_13600at 3019.238 kb on - strand, within AO353_13600at 3019.770 kb on - strand, within AO353_13600at 3020.010 kb on - strand, within AO353_13600at 3020.061 kb on + strand, within AO353_13600at 3020.062 kb on - strand, within AO353_13600at 3020.062 kb on - strand, within AO353_13600at 3020.062 kb on - strand, within AO353_13600at 3020.174 kb on + strandat 3020.196 kb on + strandat 3020.196 kb on + strandat 3020.196 kb on + strandat 3020.196 kb on + strandat 3020.196 kb on + strandat 3020.196 kb on + strandat 3020.196 kb on + strandat 3020.196 kb on + strandat 3020.196 kb on + strandat 3020.196 kb on + strandat 3020.196 kb on + strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.197 kb on - strandat 3020.198 kb on + strandat 3020.198 kb on + strandat 3020.198 kb on + strandat 3020.198 kb on + strandat 3020.199 kb on - strandat 3020.199 kb on - strandat 3020.199 kb on - strandat 3020.258 kb on + strandat 3020.258 kb on + strandat 3020.259 kb on - strandat 3020.259 kb on - strandat 3020.259 kb on - strandat 3020.259 kb on - strandat 3020.259 kb on - strandat 3020.262 kb on - strandat 3020.289 kb on + strandat 3020.290 kb on - strandat 3020.290 kb on - strandat 3020.290 kb on - strandat 3020.297 kb on - strandat 3020.339 kb on + strandat 3020.442 kb on + strandat 3020.443 kb on - strandat 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.603 kb on + strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.604 kb on - strand, within AO353_13605at 3020.658 kb on + strand, within AO353_13605at 3020.993 kb on + strand, within AO353_13605at 3020.994 kb on - strand, within AO353_13605at 3021.078 kb on + strand, within AO353_13605at 3021.078 kb on + strand, within AO353_13605at 3021.078 kb on + strand, within AO353_13605at 3021.078 kb on + strand, within AO353_13605at 3021.078 kb on + strand, within AO353_13605at 3021.079 kb on - strand, within AO353_13605at 3021.079 kb on - strand, within AO353_13605at 3021.079 kb on - strand, within AO353_13605at 3021.082 kb on + strand, within AO353_13605at 3021.082 kb on + strand, within AO353_13605at 3021.082 kb on + strand, within AO353_13605at 3021.083 kb on - strand, within AO353_13605at 3021.083 kb on - strand, within AO353_13605at 3021.083 kb on - strand, within AO353_13605at 3021.109 kb on + strand, within AO353_13605at 3021.109 kb on + strand, within AO353_13605at 3021.109 kb on + strand, within AO353_13605at 3021.109 kb on + strand, within AO353_13605at 3021.110 kb on - strand, within AO353_13605at 3021.110 kb on - strand, within AO353_13605at 3021.110 kb on - strand, within AO353_13605at 3021.110 kb on - strand, within AO353_13605

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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3,018,166 + AO353_13595 0.25 +1.7
3,018,166 + AO353_13595 0.25 -0.6
3,018,166 + AO353_13595 0.25 +1.1
3,018,167 - AO353_13595 0.25 +0.1
3,018,167 - AO353_13595 0.25 -1.1
3,018,167 - AO353_13595 0.25 +0.7
3,018,174 + AO353_13595 0.26 +0.5
3,018,311 + AO353_13595 0.38 -0.0
3,018,312 - AO353_13595 0.38 +0.7
3,018,312 - AO353_13595 0.38 -1.9
3,018,312 - AO353_13595 0.38 +0.5
3,018,416 + AO353_13595 0.48 +0.3
3,018,416 + AO353_13595 0.48 -1.5
3,018,416 + AO353_13595 0.48 -1.5
3,018,416 + AO353_13595 0.48 +0.6
3,018,416 + AO353_13595 0.48 -0.9
3,018,416 + AO353_13595 0.48 +1.0
3,018,417 - AO353_13595 0.48 -0.9
3,018,417 - AO353_13595 0.48 -1.0
3,018,481 - AO353_13595 0.54 +0.5
3,018,583 + AO353_13595 0.63 -0.5
3,018,584 - AO353_13595 0.63 +2.4
3,018,584 - AO353_13595 0.63 -1.9
3,018,584 - AO353_13595 0.63 -0.7
3,018,647 - AO353_13595 0.69 -0.3
3,018,731 + AO353_13595 0.76 -1.1
3,018,731 + AO353_13595 0.76 +0.1
3,018,731 + AO353_13595 0.76 +0.1
3,018,731 + AO353_13595 0.76 +1.3
3,018,732 - AO353_13595 0.76 -1.2
3,018,732 - AO353_13595 0.76 -1.5
3,018,732 - AO353_13595 0.76 -0.6
3,018,732 - AO353_13595 0.76 +0.3
3,018,732 - AO353_13595 0.76 +0.4
3,019,001 - +0.1
3,019,075 + -1.9
3,019,238 - AO353_13600 0.21 +1.4
3,019,238 - AO353_13600 0.21 -0.5
3,019,238 - AO353_13600 0.21 +0.7
3,019,238 - AO353_13600 0.21 -2.1
3,019,770 - AO353_13600 0.65 +0.4
3,020,010 - AO353_13600 0.85 +1.4
3,020,061 + AO353_13600 0.89 -0.3
3,020,062 - AO353_13600 0.89 -0.0
3,020,062 - AO353_13600 0.89 +0.1
3,020,062 - AO353_13600 0.89 +1.5
3,020,174 + -0.2
3,020,196 + -0.1
3,020,196 + +2.9
3,020,196 + -1.5
3,020,196 + -1.5
3,020,196 + -0.7
3,020,196 + +0.5
3,020,196 + +0.1
3,020,196 + -0.2
3,020,196 + -0.2
3,020,196 + -0.9
3,020,196 + +0.7
3,020,197 - +0.1
3,020,197 - +0.5
3,020,197 - +0.1
3,020,197 - -0.1
3,020,197 - +1.9
3,020,197 - -0.3
3,020,197 - -3.2
3,020,197 - -0.1
3,020,197 - +1.7
3,020,197 - +0.1
3,020,197 - -2.1
3,020,197 - +0.3
3,020,198 + -0.9
3,020,198 + +0.4
3,020,198 + +0.1
3,020,198 + +0.1
3,020,199 - +0.1
3,020,199 - +0.8
3,020,199 - +2.3
3,020,258 + +0.2
3,020,258 + +1.1
3,020,259 - -1.7
3,020,259 - -1.1
3,020,259 - +0.1
3,020,259 - +1.2
3,020,259 - +0.5
3,020,262 - +0.1
3,020,289 + -0.5
3,020,290 - -0.4
3,020,290 - +2.5
3,020,290 - +2.9
3,020,297 - +1.7
3,020,339 + +1.1
3,020,442 + +0.1
3,020,443 - -0.2
3,020,603 + AO353_13605 0.21 +0.8
3,020,603 + AO353_13605 0.21 -0.1
3,020,603 + AO353_13605 0.21 +0.3
3,020,603 + AO353_13605 0.21 -1.5
3,020,603 + AO353_13605 0.21 +0.6
3,020,603 + AO353_13605 0.21 +0.5
3,020,603 + AO353_13605 0.21 -0.2
3,020,603 + AO353_13605 0.21 +0.2
3,020,603 + AO353_13605 0.21 +0.1
3,020,603 + AO353_13605 0.21 -1.2
3,020,603 + AO353_13605 0.21 -0.7
3,020,603 + AO353_13605 0.21 +1.1
3,020,603 + AO353_13605 0.21 +1.7
3,020,603 + AO353_13605 0.21 +1.1
3,020,603 + AO353_13605 0.21 -3.2
3,020,603 + AO353_13605 0.21 -0.5
3,020,603 + AO353_13605 0.21 -2.0
3,020,603 + AO353_13605 0.21 -0.1
3,020,604 - AO353_13605 0.21 +1.1
3,020,604 - AO353_13605 0.21 +0.1
3,020,604 - AO353_13605 0.21 -1.5
3,020,604 - AO353_13605 0.21 -1.5
3,020,604 - AO353_13605 0.21 -0.9
3,020,604 - AO353_13605 0.21 -0.3
3,020,604 - AO353_13605 0.21 +0.5
3,020,604 - AO353_13605 0.21 +1.0
3,020,604 - AO353_13605 0.21 -2.2
3,020,604 - AO353_13605 0.21 +0.8
3,020,604 - AO353_13605 0.21 -0.9
3,020,604 - AO353_13605 0.21 +0.9
3,020,604 - AO353_13605 0.21 +2.1
3,020,604 - AO353_13605 0.21 +0.3
3,020,658 + AO353_13605 0.25 +1.7
3,020,993 + AO353_13605 0.51 +0.1
3,020,994 - AO353_13605 0.51 +0.1
3,021,078 + AO353_13605 0.57 -0.6
3,021,078 + AO353_13605 0.57 +0.7
3,021,078 + AO353_13605 0.57 +0.1
3,021,078 + AO353_13605 0.57 +0.1
3,021,078 + AO353_13605 0.57 +0.4
3,021,079 - AO353_13605 0.58 -1.1
3,021,079 - AO353_13605 0.58 -1.2
3,021,079 - AO353_13605 0.58 -0.9
3,021,082 + AO353_13605 0.58 +2.3
3,021,082 + AO353_13605 0.58 +0.5
3,021,082 + AO353_13605 0.58 -1.0
3,021,083 - AO353_13605 0.58 -0.9
3,021,083 - AO353_13605 0.58 +0.1
3,021,083 - AO353_13605 0.58 +1.1
3,021,109 + AO353_13605 0.60 +1.1
3,021,109 + AO353_13605 0.60 -0.3
3,021,109 + AO353_13605 0.60 -0.5
3,021,109 + AO353_13605 0.60 -0.7
3,021,110 - AO353_13605 0.60 -1.7
3,021,110 - AO353_13605 0.60 -2.2
3,021,110 - AO353_13605 0.60 +2.1
3,021,110 - AO353_13605 0.60 +0.1

Or see this region's nucleotide sequence