Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09220

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09215 and AO353_09220 are separated by 7 nucleotidesAO353_09220 and AO353_09225 are separated by 133 nucleotides AO353_09215: AO353_09215 - peptide ABC transporter substrate-binding protein, at 2,022,503 to 2,024,089 _09215 AO353_09220: AO353_09220 - hypothetical protein, at 2,024,097 to 2,024,771 _09220 AO353_09225: AO353_09225 - phosphopantothenoylcysteine decarboxylase, at 2,024,905 to 2,026,113 _09225 Position (kb) 2024 2025Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2023.157 kb on + strand, within AO353_09215at 2023.157 kb on + strand, within AO353_09215at 2023.157 kb on + strand, within AO353_09215at 2023.158 kb on - strand, within AO353_09215at 2023.158 kb on - strand, within AO353_09215at 2023.158 kb on - strand, within AO353_09215at 2023.158 kb on - strand, within AO353_09215at 2023.175 kb on + strand, within AO353_09215at 2023.175 kb on + strand, within AO353_09215at 2023.176 kb on - strand, within AO353_09215at 2023.176 kb on - strand, within AO353_09215at 2023.176 kb on - strand, within AO353_09215at 2023.176 kb on - strand, within AO353_09215at 2023.176 kb on - strand, within AO353_09215at 2023.339 kb on + strand, within AO353_09215at 2023.339 kb on + strand, within AO353_09215at 2023.339 kb on + strand, within AO353_09215at 2023.340 kb on - strand, within AO353_09215at 2023.340 kb on - strand, within AO353_09215at 2023.340 kb on - strand, within AO353_09215at 2023.340 kb on - strand, within AO353_09215at 2023.445 kb on + strand, within AO353_09215at 2023.445 kb on + strand, within AO353_09215at 2023.445 kb on + strand, within AO353_09215at 2023.446 kb on - strand, within AO353_09215at 2023.446 kb on - strand, within AO353_09215at 2023.446 kb on - strand, within AO353_09215at 2023.446 kb on - strand, within AO353_09215at 2023.514 kb on + strand, within AO353_09215at 2023.514 kb on + strand, within AO353_09215at 2023.515 kb on - strand, within AO353_09215at 2023.597 kb on + strand, within AO353_09215at 2023.597 kb on + strand, within AO353_09215at 2023.597 kb on + strand, within AO353_09215at 2023.597 kb on + strand, within AO353_09215at 2023.597 kb on + strand, within AO353_09215at 2023.597 kb on + strand, within AO353_09215at 2023.597 kb on + strand, within AO353_09215at 2023.597 kb on + strand, within AO353_09215at 2023.598 kb on - strand, within AO353_09215at 2023.598 kb on - strand, within AO353_09215at 2023.598 kb on - strand, within AO353_09215at 2023.681 kb on - strand, within AO353_09215at 2023.681 kb on - strand, within AO353_09215at 2023.866 kb on - strand, within AO353_09215at 2023.886 kb on - strand, within AO353_09215at 2023.891 kb on + strand, within AO353_09215at 2023.891 kb on + strand, within AO353_09215at 2023.891 kb on + strand, within AO353_09215at 2023.892 kb on - strand, within AO353_09215at 2023.892 kb on - strand, within AO353_09215at 2023.940 kb on + strandat 2023.940 kb on + strandat 2023.941 kb on - strandat 2023.941 kb on - strandat 2024.007 kb on - strandat 2024.066 kb on + strandat 2024.066 kb on + strandat 2024.087 kb on + strandat 2024.087 kb on + strandat 2024.088 kb on - strandat 2024.088 kb on - strandat 2024.098 kb on + strandat 2024.098 kb on + strandat 2024.098 kb on + strandat 2024.098 kb on + strandat 2024.098 kb on + strandat 2024.099 kb on - strandat 2024.099 kb on - strandat 2024.099 kb on - strandat 2024.099 kb on - strandat 2024.099 kb on - strandat 2024.099 kb on - strandat 2024.099 kb on - strandat 2024.110 kb on + strandat 2024.161 kb on - strandat 2024.314 kb on + strand, within AO353_09220at 2024.315 kb on - strand, within AO353_09220at 2024.349 kb on + strand, within AO353_09220at 2024.349 kb on + strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.350 kb on - strand, within AO353_09220at 2024.437 kb on + strand, within AO353_09220at 2024.437 kb on + strand, within AO353_09220at 2024.437 kb on + strand, within AO353_09220at 2024.437 kb on + strand, within AO353_09220at 2024.438 kb on - strand, within AO353_09220at 2024.438 kb on - strand, within AO353_09220at 2024.438 kb on - strand, within AO353_09220at 2024.438 kb on - strand, within AO353_09220at 2024.670 kb on + strand, within AO353_09220at 2024.670 kb on + strand, within AO353_09220at 2024.671 kb on - strand, within AO353_09220at 2024.671 kb on - strand, within AO353_09220at 2024.671 kb on - strand, within AO353_09220at 2024.671 kb on - strand, within AO353_09220at 2024.671 kb on - strand, within AO353_09220at 2024.685 kb on + strand, within AO353_09220at 2024.771 kb on + strandat 2024.771 kb on + strandat 2024.771 kb on + strandat 2024.771 kb on + strandat 2024.771 kb on + strandat 2024.771 kb on + strandat 2024.771 kb on + strandat 2024.771 kb on + strandat 2024.771 kb on + strandat 2024.771 kb on + strandat 2024.771 kb on + strandat 2024.772 kb on - strandat 2024.772 kb on - strandat 2024.772 kb on - strandat 2024.772 kb on - strandat 2024.772 kb on - strandat 2024.772 kb on - strandat 2024.772 kb on - strandat 2024.772 kb on - strandat 2024.772 kb on - strandat 2024.772 kb on - strandat 2024.825 kb on + strandat 2024.825 kb on + strandat 2024.825 kb on + strandat 2024.825 kb on + strandat 2024.825 kb on + strandat 2024.825 kb on + strandat 2024.825 kb on + strandat 2024.876 kb on + strandat 2024.876 kb on + strandat 2024.876 kb on + strandat 2024.876 kb on + strandat 2024.876 kb on + strandat 2024.876 kb on + strandat 2024.876 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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2,023,157 + AO353_09215 0.41 -0.9
2,023,157 + AO353_09215 0.41 -0.3
2,023,157 + AO353_09215 0.41 +0.5
2,023,158 - AO353_09215 0.41 +0.3
2,023,158 - AO353_09215 0.41 -0.2
2,023,158 - AO353_09215 0.41 -1.1
2,023,158 - AO353_09215 0.41 +0.8
2,023,175 + AO353_09215 0.42 -1.4
2,023,175 + AO353_09215 0.42 -0.5
2,023,176 - AO353_09215 0.42 +0.9
2,023,176 - AO353_09215 0.42 +1.1
2,023,176 - AO353_09215 0.42 -0.5
2,023,176 - AO353_09215 0.42 +1.9
2,023,176 - AO353_09215 0.42 +1.4
2,023,339 + AO353_09215 0.53 +1.2
2,023,339 + AO353_09215 0.53 +0.2
2,023,339 + AO353_09215 0.53 -1.0
2,023,340 - AO353_09215 0.53 +1.2
2,023,340 - AO353_09215 0.53 -1.2
2,023,340 - AO353_09215 0.53 +1.4
2,023,340 - AO353_09215 0.53 -0.8
2,023,445 + AO353_09215 0.59 -0.8
2,023,445 + AO353_09215 0.59 +0.2
2,023,445 + AO353_09215 0.59 +0.7
2,023,446 - AO353_09215 0.59 +0.2
2,023,446 - AO353_09215 0.59 +2.2
2,023,446 - AO353_09215 0.59 -0.7
2,023,446 - AO353_09215 0.59 +1.8
2,023,514 + AO353_09215 0.64 -1.8
2,023,514 + AO353_09215 0.64 -0.4
2,023,515 - AO353_09215 0.64 -0.2
2,023,597 + AO353_09215 0.69 -0.1
2,023,597 + AO353_09215 0.69 +0.2
2,023,597 + AO353_09215 0.69 -0.0
2,023,597 + AO353_09215 0.69 +0.2
2,023,597 + AO353_09215 0.69 +0.0
2,023,597 + AO353_09215 0.69 -0.7
2,023,597 + AO353_09215 0.69 -0.1
2,023,597 + AO353_09215 0.69 -0.3
2,023,598 - AO353_09215 0.69 -0.0
2,023,598 - AO353_09215 0.69 +0.3
2,023,598 - AO353_09215 0.69 +1.2
2,023,681 - AO353_09215 0.74 -0.1
2,023,681 - AO353_09215 0.74 -0.7
2,023,866 - AO353_09215 0.86 -0.3
2,023,886 - AO353_09215 0.87 -0.4
2,023,891 + AO353_09215 0.87 -0.5
2,023,891 + AO353_09215 0.87 +0.3
2,023,891 + AO353_09215 0.87 -1.0
2,023,892 - AO353_09215 0.88 -0.6
2,023,892 - AO353_09215 0.88 -0.7
2,023,940 + -0.4
2,023,940 + +1.0
2,023,941 - +1.8
2,023,941 - +0.9
2,024,007 - +0.1
2,024,066 + +0.5
2,024,066 + -0.1
2,024,087 + +0.1
2,024,087 + +1.1
2,024,088 - +0.0
2,024,088 - -0.1
2,024,098 + -0.2
2,024,098 + -1.6
2,024,098 + -1.1
2,024,098 + -2.6
2,024,098 + +0.9
2,024,099 - +0.3
2,024,099 - +0.2
2,024,099 - +0.4
2,024,099 - -0.8
2,024,099 - +0.0
2,024,099 - +0.2
2,024,099 - -0.2
2,024,110 + +1.2
2,024,161 - -1.1
2,024,314 + AO353_09220 0.32 +0.4
2,024,315 - AO353_09220 0.32 +0.2
2,024,349 + AO353_09220 0.37 +1.4
2,024,349 + AO353_09220 0.37 -1.0
2,024,350 - AO353_09220 0.37 +1.2
2,024,350 - AO353_09220 0.37 -0.5
2,024,350 - AO353_09220 0.37 +2.0
2,024,350 - AO353_09220 0.37 -0.2
2,024,350 - AO353_09220 0.37 +0.2
2,024,350 - AO353_09220 0.37 -0.4
2,024,350 - AO353_09220 0.37 -1.1
2,024,350 - AO353_09220 0.37 -0.7
2,024,350 - AO353_09220 0.37 -0.6
2,024,350 - AO353_09220 0.37 -0.5
2,024,350 - AO353_09220 0.37 +0.4
2,024,437 + AO353_09220 0.50 +1.4
2,024,437 + AO353_09220 0.50 -1.4
2,024,437 + AO353_09220 0.50 +1.4
2,024,437 + AO353_09220 0.50 +0.2
2,024,438 - AO353_09220 0.51 -1.5
2,024,438 - AO353_09220 0.51 -0.0
2,024,438 - AO353_09220 0.51 +0.6
2,024,438 - AO353_09220 0.51 -2.8
2,024,670 + AO353_09220 0.85 -1.1
2,024,670 + AO353_09220 0.85 -0.5
2,024,671 - AO353_09220 0.85 +0.2
2,024,671 - AO353_09220 0.85 -0.2
2,024,671 - AO353_09220 0.85 +0.7
2,024,671 - AO353_09220 0.85 -0.5
2,024,671 - AO353_09220 0.85 +0.3
2,024,685 + AO353_09220 0.87 +1.2
2,024,771 + -1.6
2,024,771 + +0.2
2,024,771 + +0.0
2,024,771 + +0.7
2,024,771 + +1.2
2,024,771 + +1.2
2,024,771 + -1.1
2,024,771 + -0.7
2,024,771 + +0.6
2,024,771 + +0.6
2,024,771 + -1.4
2,024,772 - -0.3
2,024,772 - +0.9
2,024,772 - -2.4
2,024,772 - +0.2
2,024,772 - -0.4
2,024,772 - -0.1
2,024,772 - -0.7
2,024,772 - +1.4
2,024,772 - +0.3
2,024,772 - +0.5
2,024,825 + -0.4
2,024,825 + +0.0
2,024,825 + -1.0
2,024,825 + +0.2
2,024,825 + +0.5
2,024,825 + -0.8
2,024,825 + -0.6
2,024,876 + -0.4
2,024,876 + -0.5
2,024,876 + -0.7
2,024,876 + +0.6
2,024,876 + -1.5
2,024,876 + -0.9
2,024,876 + +0.2

Or see this region's nucleotide sequence