Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03195

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03185 and AO353_03190 are separated by 46 nucleotidesAO353_03190 and AO353_03195 are separated by 89 nucleotidesAO353_03195 and AO353_03200 are separated by 117 nucleotides AO353_03185: AO353_03185 - short-chain dehydrogenase, at 679,934 to 680,692 _03185 AO353_03190: AO353_03190 - hypothetical protein, at 680,739 to 681,176 _03190 AO353_03195: AO353_03195 - transcriptional regulator, at 681,266 to 682,120 _03195 AO353_03200: AO353_03200 - RNA polymerase subunit sigma-24, at 682,238 to 683,473 _03200 Position (kb) 681 682 683Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 680.356 kb on + strand, within AO353_03185at 680.356 kb on + strand, within AO353_03185at 680.356 kb on + strand, within AO353_03185at 680.357 kb on - strand, within AO353_03185at 680.402 kb on + strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.483 kb on - strand, within AO353_03185at 680.569 kb on + strand, within AO353_03185at 680.569 kb on + strand, within AO353_03185at 680.569 kb on + strand, within AO353_03185at 680.691 kb on - strandat 680.740 kb on + strandat 680.740 kb on + strandat 680.763 kb on + strandat 680.788 kb on + strand, within AO353_03190at 680.789 kb on - strand, within AO353_03190at 680.789 kb on - strand, within AO353_03190at 680.800 kb on + strand, within AO353_03190at 680.801 kb on - strand, within AO353_03190at 680.801 kb on - strand, within AO353_03190at 680.801 kb on - strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.813 kb on - strand, within AO353_03190at 681.101 kb on + strand, within AO353_03190at 681.101 kb on + strand, within AO353_03190at 681.101 kb on + strand, within AO353_03190at 681.102 kb on - strand, within AO353_03190at 681.102 kb on - strand, within AO353_03190at 681.102 kb on - strand, within AO353_03190at 681.102 kb on - strand, within AO353_03190at 681.102 kb on - strand, within AO353_03190at 681.234 kb on + strandat 681.569 kb on + strand, within AO353_03195at 681.569 kb on + strand, within AO353_03195at 681.569 kb on + strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.723 kb on - strand, within AO353_03195at 681.876 kb on - strand, within AO353_03195at 681.917 kb on + strand, within AO353_03195at 681.917 kb on + strand, within AO353_03195at 682.183 kb on - strandat 682.188 kb on + strandat 682.189 kb on - strandat 682.206 kb on + strandat 682.206 kb on + strandat 682.212 kb on + strandat 682.213 kb on - strandat 682.213 kb on - strandat 682.223 kb on + strandat 682.223 kb on + strandat 682.224 kb on - strandat 682.224 kb on - strandat 682.224 kb on - strandat 682.224 kb on - strandat 682.224 kb on - strandat 682.224 kb on - strandat 682.224 kb on - strandat 682.224 kb on - strandat 682.314 kb on + strandat 682.386 kb on + strand, within AO353_03200at 682.386 kb on + strand, within AO353_03200at 682.386 kb on + strand, within AO353_03200at 682.387 kb on - strand, within AO353_03200at 682.387 kb on - strand, within AO353_03200at 682.521 kb on + strand, within AO353_03200at 682.521 kb on + strand, within AO353_03200at 682.521 kb on + strand, within AO353_03200at 682.522 kb on - strand, within AO353_03200at 682.522 kb on - strand, within AO353_03200at 682.522 kb on - strand, within AO353_03200at 682.522 kb on - strand, within AO353_03200at 682.522 kb on - strand, within AO353_03200at 682.605 kb on + strand, within AO353_03200at 682.605 kb on + strand, within AO353_03200at 682.673 kb on - strand, within AO353_03200at 682.881 kb on + strand, within AO353_03200at 682.902 kb on + strand, within AO353_03200at 682.902 kb on + strand, within AO353_03200at 682.902 kb on + strand, within AO353_03200at 682.902 kb on + strand, within AO353_03200at 682.902 kb on + strand, within AO353_03200at 682.902 kb on + strand, within AO353_03200at 682.902 kb on + strand, within AO353_03200at 682.903 kb on - strand, within AO353_03200at 682.916 kb on + strand, within AO353_03200at 682.916 kb on + strand, within AO353_03200at 682.916 kb on + strand, within AO353_03200at 682.916 kb on + strand, within AO353_03200at 682.917 kb on - strand, within AO353_03200at 682.917 kb on - strand, within AO353_03200at 682.917 kb on - strand, within AO353_03200

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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680,356 + AO353_03185 0.56 -1.3
680,356 + AO353_03185 0.56 +0.2
680,356 + AO353_03185 0.56 -2.0
680,357 - AO353_03185 0.56 -0.9
680,402 + AO353_03185 0.62 -2.8
680,403 - AO353_03185 0.62 +0.4
680,403 - AO353_03185 0.62 -0.3
680,403 - AO353_03185 0.62 -2.0
680,403 - AO353_03185 0.62 +0.6
680,483 - AO353_03185 0.72 -0.0
680,569 + AO353_03185 0.84 +1.8
680,569 + AO353_03185 0.84 +0.4
680,569 + AO353_03185 0.84 -0.0
680,691 - -0.8
680,740 + -1.0
680,740 + -0.8
680,763 + -0.0
680,788 + AO353_03190 0.11 +1.0
680,789 - AO353_03190 0.11 -0.4
680,789 - AO353_03190 0.11 +0.2
680,800 + AO353_03190 0.14 +1.7
680,801 - AO353_03190 0.14 +1.4
680,801 - AO353_03190 0.14 +0.8
680,801 - AO353_03190 0.14 +1.3
680,806 + AO353_03190 0.15 -1.6
680,806 + AO353_03190 0.15 -0.7
680,806 + AO353_03190 0.15 -1.0
680,806 + AO353_03190 0.15 -0.7
680,806 + AO353_03190 0.15 -0.0
680,806 + AO353_03190 0.15 -0.0
680,806 + AO353_03190 0.15 +0.7
680,806 + AO353_03190 0.15 +1.6
680,806 + AO353_03190 0.15 -0.0
680,806 + AO353_03190 0.15 +0.2
680,806 + AO353_03190 0.15 +0.8
680,806 + AO353_03190 0.15 -1.0
680,807 - AO353_03190 0.16 -1.6
680,807 - AO353_03190 0.16 -0.0
680,807 - AO353_03190 0.16 -1.3
680,807 - AO353_03190 0.16 +0.6
680,807 - AO353_03190 0.16 -0.0
680,807 - AO353_03190 0.16 -0.3
680,807 - AO353_03190 0.16 -0.6
680,807 - AO353_03190 0.16 -2.0
680,807 - AO353_03190 0.16 -0.7
680,807 - AO353_03190 0.16 +1.6
680,813 - AO353_03190 0.17 -0.8
681,101 + AO353_03190 0.83 +0.7
681,101 + AO353_03190 0.83 +1.0
681,101 + AO353_03190 0.83 -1.6
681,102 - AO353_03190 0.83 +0.3
681,102 - AO353_03190 0.83 -0.0
681,102 - AO353_03190 0.83 -1.4
681,102 - AO353_03190 0.83 -1.2
681,102 - AO353_03190 0.83 +0.7
681,234 + -0.8
681,569 + AO353_03195 0.35 -0.0
681,569 + AO353_03195 0.35 +0.7
681,569 + AO353_03195 0.35 +0.5
681,570 - AO353_03195 0.36 +0.3
681,570 - AO353_03195 0.36 +2.3
681,570 - AO353_03195 0.36 +0.4
681,570 - AO353_03195 0.36 +0.2
681,570 - AO353_03195 0.36 +0.3
681,570 - AO353_03195 0.36 -1.6
681,723 - AO353_03195 0.53 -0.4
681,876 - AO353_03195 0.71 +1.0
681,917 + AO353_03195 0.76 +0.3
681,917 + AO353_03195 0.76 -0.0
682,183 - +1.0
682,188 + -1.6
682,189 - +1.0
682,206 + +0.6
682,206 + -1.0
682,212 + +0.1
682,213 - -1.8
682,213 - +0.6
682,223 + -1.2
682,223 + -0.3
682,224 - -0.3
682,224 - -2.3
682,224 - +1.2
682,224 - -1.8
682,224 - -0.0
682,224 - +0.7
682,224 - +0.4
682,224 - +1.8
682,314 + -1.6
682,386 + AO353_03200 0.12 -1.3
682,386 + AO353_03200 0.12 +0.3
682,386 + AO353_03200 0.12 +0.3
682,387 - AO353_03200 0.12 +1.0
682,387 - AO353_03200 0.12 +0.3
682,521 + AO353_03200 0.23 +1.6
682,521 + AO353_03200 0.23 -0.0
682,521 + AO353_03200 0.23 -0.8
682,522 - AO353_03200 0.23 +1.0
682,522 - AO353_03200 0.23 -0.1
682,522 - AO353_03200 0.23 -1.0
682,522 - AO353_03200 0.23 +0.2
682,522 - AO353_03200 0.23 +1.4
682,605 + AO353_03200 0.30 -0.0
682,605 + AO353_03200 0.30 -0.2
682,673 - AO353_03200 0.35 +0.7
682,881 + AO353_03200 0.52 -0.0
682,902 + AO353_03200 0.54 -0.4
682,902 + AO353_03200 0.54 +0.4
682,902 + AO353_03200 0.54 +0.4
682,902 + AO353_03200 0.54 -0.5
682,902 + AO353_03200 0.54 -0.5
682,902 + AO353_03200 0.54 -0.2
682,902 + AO353_03200 0.54 -1.3
682,903 - AO353_03200 0.54 +1.4
682,916 + AO353_03200 0.55 +1.8
682,916 + AO353_03200 0.55 -0.4
682,916 + AO353_03200 0.55 -1.4
682,916 + AO353_03200 0.55 +2.3
682,917 - AO353_03200 0.55 -0.3
682,917 - AO353_03200 0.55 -0.6
682,917 - AO353_03200 0.55 +0.2

Or see this region's nucleotide sequence