Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00295

Experiment: Ionizing radiation, 126.196 Gy,

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00290 and AO353_00295 are separated by 177 nucleotidesAO353_00295 and AO353_00300 are separated by 213 nucleotides AO353_00290: AO353_00290 - integrase, at 50,748 to 51,872 _00290 AO353_00295: AO353_00295 - tRNA-dihydrouridine synthase A, at 52,050 to 52,985 _00295 AO353_00300: AO353_00300 - DNA helicase, at 53,199 to 54,935 _00300 Position (kb) 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 51.087 kb on + strand, within AO353_00290at 51.087 kb on + strand, within AO353_00290at 51.087 kb on + strand, within AO353_00290at 51.087 kb on + strand, within AO353_00290at 51.088 kb on - strand, within AO353_00290at 51.088 kb on - strand, within AO353_00290at 51.088 kb on - strand, within AO353_00290at 51.148 kb on - strand, within AO353_00290at 51.168 kb on + strand, within AO353_00290at 51.168 kb on + strand, within AO353_00290at 51.169 kb on - strand, within AO353_00290at 51.169 kb on - strand, within AO353_00290at 51.169 kb on - strand, within AO353_00290at 51.245 kb on + strand, within AO353_00290at 51.246 kb on - strand, within AO353_00290at 51.246 kb on - strand, within AO353_00290at 51.246 kb on - strand, within AO353_00290at 51.246 kb on - strand, within AO353_00290at 51.246 kb on - strand, within AO353_00290at 51.246 kb on - strand, within AO353_00290at 51.295 kb on - strand, within AO353_00290at 51.295 kb on - strand, within AO353_00290at 51.300 kb on - strand, within AO353_00290at 51.317 kb on + strand, within AO353_00290at 51.317 kb on + strand, within AO353_00290at 51.317 kb on + strand, within AO353_00290at 51.318 kb on - strand, within AO353_00290at 51.464 kb on + strand, within AO353_00290at 51.483 kb on + strand, within AO353_00290at 51.484 kb on - strand, within AO353_00290at 51.484 kb on - strand, within AO353_00290at 51.520 kb on + strand, within AO353_00290at 51.520 kb on + strand, within AO353_00290at 51.520 kb on + strand, within AO353_00290at 51.520 kb on + strandat 51.520 kb on + strand, within AO353_00290at 51.520 kb on + strand, within AO353_00290at 51.520 kb on + strand, within AO353_00290at 51.520 kb on + strand, within AO353_00290at 51.520 kb on + strand, within AO353_00290at 51.520 kb on + strand, within AO353_00290at 51.521 kb on - strand, within AO353_00290at 51.521 kb on - strand, within AO353_00290at 51.521 kb on - strand, within AO353_00290at 51.571 kb on + strand, within AO353_00290at 51.572 kb on - strand, within AO353_00290at 51.572 kb on - strand, within AO353_00290at 51.572 kb on - strand, within AO353_00290at 51.646 kb on + strand, within AO353_00290at 51.647 kb on - strand, within AO353_00290at 51.784 kb on + strandat 51.813 kb on + strandat 51.813 kb on + strandat 51.813 kb on + strandat 51.813 kb on + strandat 51.813 kb on + strandat 51.814 kb on - strandat 51.814 kb on - strandat 51.814 kb on - strandat 51.814 kb on - strandat 51.814 kb on - strandat 51.814 kb on - strandat 51.814 kb on - strandat 51.826 kb on + strandat 51.905 kb on - strandat 51.992 kb on + strandat 51.992 kb on + strandat 51.996 kb on + strandat 51.997 kb on - strandat 52.016 kb on + strandat 52.016 kb on + strandat 52.017 kb on - strandat 52.085 kb on - strandat 52.208 kb on - strand, within AO353_00295at 52.319 kb on + strand, within AO353_00295at 52.319 kb on + strand, within AO353_00295at 52.319 kb on + strand, within AO353_00295at 52.319 kb on + strand, within AO353_00295at 52.319 kb on + strand, within AO353_00295at 52.319 kb on + strand, within AO353_00295at 52.319 kb on + strand, within AO353_00295at 52.319 kb on + strand, within AO353_00295at 52.319 kb on + strand, within AO353_00295at 52.320 kb on - strand, within AO353_00295at 52.320 kb on - strand, within AO353_00295at 52.320 kb on - strand, within AO353_00295at 52.320 kb on - strand, within AO353_00295at 52.320 kb on - strand, within AO353_00295at 52.499 kb on + strand, within AO353_00295at 52.499 kb on + strand, within AO353_00295at 52.500 kb on - strandat 52.572 kb on + strand, within AO353_00295at 52.573 kb on - strand, within AO353_00295at 52.619 kb on + strand, within AO353_00295at 52.620 kb on - strand, within AO353_00295at 52.620 kb on - strand, within AO353_00295at 52.620 kb on - strand, within AO353_00295at 52.716 kb on + strand, within AO353_00295at 52.716 kb on + strand, within AO353_00295at 52.716 kb on + strand, within AO353_00295at 52.717 kb on - strand, within AO353_00295at 52.717 kb on - strand, within AO353_00295at 52.717 kb on - strand, within AO353_00295at 52.717 kb on - strand, within AO353_00295at 52.717 kb on - strand, within AO353_00295at 52.803 kb on + strand, within AO353_00295at 52.803 kb on + strand, within AO353_00295at 52.803 kb on + strand, within AO353_00295at 52.804 kb on - strand, within AO353_00295at 52.804 kb on - strand, within AO353_00295at 52.804 kb on - strand, within AO353_00295at 52.804 kb on - strand, within AO353_00295at 52.804 kb on - strand, within AO353_00295at 52.804 kb on - strand, within AO353_00295at 52.804 kb on - strand, within AO353_00295at 52.804 kb on - strand, within AO353_00295at 52.805 kb on + strand, within AO353_00295at 52.806 kb on - strand, within AO353_00295at 52.806 kb on - strand, within AO353_00295at 52.806 kb on - strand, within AO353_00295at 52.806 kb on - strand, within AO353_00295at 52.844 kb on + strand, within AO353_00295at 52.844 kb on + strand, within AO353_00295at 52.845 kb on - strand, within AO353_00295at 52.845 kb on - strandat 52.845 kb on - strand, within AO353_00295at 52.845 kb on - strand, within AO353_00295at 52.845 kb on - strand, within AO353_00295at 52.845 kb on - strand, within AO353_00295at 52.845 kb on - strand, within AO353_00295at 52.984 kb on - strandat 53.034 kb on + strandat 53.035 kb on - strandat 53.065 kb on + strandat 53.066 kb on - strandat 53.066 kb on - strandat 53.083 kb on + strandat 53.083 kb on + strandat 53.083 kb on + strandat 53.083 kb on + strandat 53.084 kb on - strandat 53.084 kb on - strandat 53.084 kb on - strandat 53.084 kb on - strandat 53.084 kb on - strandat 53.084 kb on - strandat 53.138 kb on - strandat 53.138 kb on - strandat 53.148 kb on + strandat 53.148 kb on + strandat 53.149 kb on - strandat 53.149 kb on - strandat 53.149 kb on - strandat 53.149 kb on - strandat 53.149 kb on - strandat 53.166 kb on + strandat 53.166 kb on + strandat 53.166 kb on + strandat 53.166 kb on + strandat 53.166 kb on + strandat 53.166 kb on + strandat 53.167 kb on - strandat 53.167 kb on - strandat 53.171 kb on + strandat 53.172 kb on - strandat 53.192 kb on + strandat 53.193 kb on - strandat 53.193 kb on - strandat 53.193 kb on - strandat 53.290 kb on + strandat 53.291 kb on - strandat 53.379 kb on + strand, within AO353_00300at 53.380 kb on - strand, within AO353_00300at 53.380 kb on - strand, within AO353_00300at 53.380 kb on - strandat 53.455 kb on + strand, within AO353_00300at 53.455 kb on + strand, within AO353_00300at 53.455 kb on + strand, within AO353_00300at 53.455 kb on + strand, within AO353_00300at 53.455 kb on + strand, within AO353_00300at 53.455 kb on + strand, within AO353_00300at 53.455 kb on + strand, within AO353_00300at 53.455 kb on + strand, within AO353_00300at 53.456 kb on - strand, within AO353_00300at 53.456 kb on - strand, within AO353_00300at 53.559 kb on + strand, within AO353_00300at 53.559 kb on + strand, within AO353_00300at 53.559 kb on + strand, within AO353_00300at 53.560 kb on - strand, within AO353_00300at 53.592 kb on + strand, within AO353_00300at 53.592 kb on + strand, within AO353_00300at 53.592 kb on + strand, within AO353_00300at 53.593 kb on - strand, within AO353_00300at 53.593 kb on - strand, within AO353_00300at 53.593 kb on - strand, within AO353_00300at 53.595 kb on + strand, within AO353_00300at 53.595 kb on + strand, within AO353_00300at 53.595 kb on + strand, within AO353_00300at 53.595 kb on + strand, within AO353_00300at 53.595 kb on + strand, within AO353_00300at 53.595 kb on + strand, within AO353_00300at 53.596 kb on - strand, within AO353_00300at 53.596 kb on - strand, within AO353_00300at 53.596 kb on - strand, within AO353_00300at 53.596 kb on - strand, within AO353_00300at 53.596 kb on - strand, within AO353_00300at 53.596 kb on - strand, within AO353_00300at 53.615 kb on + strand, within AO353_00300at 53.615 kb on + strand, within AO353_00300at 53.678 kb on + strand, within AO353_00300at 53.678 kb on + strand, within AO353_00300at 53.678 kb on + strand, within AO353_00300at 53.679 kb on - strand, within AO353_00300at 53.679 kb on - strand, within AO353_00300at 53.679 kb on - strand, within AO353_00300at 53.679 kb on - strand, within AO353_00300at 53.679 kb on - strand, within AO353_00300at 53.679 kb on - strand, within AO353_00300at 53.679 kb on - strand, within AO353_00300at 53.679 kb on - strand, within AO353_00300at 53.735 kb on + strand, within AO353_00300at 53.735 kb on + strand, within AO353_00300at 53.735 kb on + strand, within AO353_00300at 53.735 kb on + strand, within AO353_00300at 53.735 kb on + strand, within AO353_00300at 53.735 kb on + strand, within AO353_00300at 53.736 kb on - strand, within AO353_00300at 53.736 kb on - strand, within AO353_00300at 53.736 kb on - strand, within AO353_00300at 53.792 kb on + strand, within AO353_00300at 53.792 kb on + strand, within AO353_00300at 53.792 kb on + strand, within AO353_00300at 53.793 kb on - strand, within AO353_00300at 53.793 kb on - strand, within AO353_00300at 53.872 kb on + strand, within AO353_00300at 53.879 kb on - strand, within AO353_00300

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Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
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51,087 + AO353_00290 0.30 +0.2
51,087 + AO353_00290 0.30 -1.1
51,087 + AO353_00290 0.30 -1.0
51,087 + AO353_00290 0.30 -0.1
51,088 - AO353_00290 0.30 -2.4
51,088 - AO353_00290 0.30 +1.5
51,088 - AO353_00290 0.30 +0.9
51,148 - AO353_00290 0.36 -0.3
51,168 + AO353_00290 0.37 -1.1
51,168 + AO353_00290 0.37 +1.3
51,169 - AO353_00290 0.37 -2.4
51,169 - AO353_00290 0.37 +0.5
51,169 - AO353_00290 0.37 +2.4
51,245 + AO353_00290 0.44 -1.5
51,246 - AO353_00290 0.44 -1.6
51,246 - AO353_00290 0.44 +1.1
51,246 - AO353_00290 0.44 -0.9
51,246 - AO353_00290 0.44 -0.5
51,246 - AO353_00290 0.44 -1.9
51,246 - AO353_00290 0.44 +0.2
51,295 - AO353_00290 0.49 -0.6
51,295 - AO353_00290 0.49 +0.6
51,300 - AO353_00290 0.49 -2.6
51,317 + AO353_00290 0.51 +1.2
51,317 + AO353_00290 0.51 +0.6
51,317 + AO353_00290 0.51 +0.7
51,318 - AO353_00290 0.51 -0.9
51,464 + AO353_00290 0.64 -2.2
51,483 + AO353_00290 0.65 +0.4
51,484 - AO353_00290 0.65 -0.1
51,484 - AO353_00290 0.65 -0.1
51,520 + AO353_00290 0.69 +0.4
51,520 + AO353_00290 0.69 +0.9
51,520 + AO353_00290 0.69 -0.5
51,520 + -0.1
51,520 + AO353_00290 0.69 -0.1
51,520 + AO353_00290 0.69 -1.2
51,520 + AO353_00290 0.69 +0.7
51,520 + AO353_00290 0.69 +0.9
51,520 + AO353_00290 0.69 -1.1
51,520 + AO353_00290 0.69 +0.9
51,521 - AO353_00290 0.69 -1.1
51,521 - AO353_00290 0.69 -1.3
51,521 - AO353_00290 0.69 -0.3
51,571 + AO353_00290 0.73 +0.2
51,572 - AO353_00290 0.73 -0.2
51,572 - AO353_00290 0.73 +0.7
51,572 - AO353_00290 0.73 +1.5
51,646 + AO353_00290 0.80 -0.7
51,647 - AO353_00290 0.80 -0.1
51,784 + +1.9
51,813 + +0.5
51,813 + -0.1
51,813 + -1.1
51,813 + -1.3
51,813 + +0.1
51,814 - +0.1
51,814 - -0.3
51,814 - -1.6
51,814 - +1.0
51,814 - +0.4
51,814 - +1.1
51,814 - -0.5
51,826 + +1.4
51,905 - -0.1
51,992 + +1.7
51,992 + -1.1
51,996 + -0.2
51,997 - +1.1
52,016 + +0.1
52,016 + -1.1
52,017 - -1.5
52,085 - -1.9
52,208 - AO353_00295 0.17 -0.1
52,319 + AO353_00295 0.29 +0.5
52,319 + AO353_00295 0.29 +0.5
52,319 + AO353_00295 0.29 +1.3
52,319 + AO353_00295 0.29 +0.6
52,319 + AO353_00295 0.29 -0.8
52,319 + AO353_00295 0.29 +0.5
52,319 + AO353_00295 0.29 -1.4
52,319 + AO353_00295 0.29 -0.1
52,319 + AO353_00295 0.29 +0.9
52,320 - AO353_00295 0.29 -0.8
52,320 - AO353_00295 0.29 +0.6
52,320 - AO353_00295 0.29 -0.4
52,320 - AO353_00295 0.29 +0.4
52,320 - AO353_00295 0.29 +0.5
52,499 + AO353_00295 0.48 +0.5
52,499 + AO353_00295 0.48 -0.6
52,500 - +1.5
52,572 + AO353_00295 0.56 +0.9
52,573 - AO353_00295 0.56 +0.9
52,619 + AO353_00295 0.61 -0.1
52,620 - AO353_00295 0.61 -0.1
52,620 - AO353_00295 0.61 +1.5
52,620 - AO353_00295 0.61 -2.4
52,716 + AO353_00295 0.71 -2.1
52,716 + AO353_00295 0.71 +0.7
52,716 + AO353_00295 0.71 +1.5
52,717 - AO353_00295 0.71 +0.4
52,717 - AO353_00295 0.71 -0.1
52,717 - AO353_00295 0.71 -0.1
52,717 - AO353_00295 0.71 -0.1
52,717 - AO353_00295 0.71 +2.3
52,803 + AO353_00295 0.80 +0.9
52,803 + AO353_00295 0.80 +0.9
52,803 + AO353_00295 0.80 -0.6
52,804 - AO353_00295 0.81 +0.4
52,804 - AO353_00295 0.81 +0.7
52,804 - AO353_00295 0.81 +0.8
52,804 - AO353_00295 0.81 -0.1
52,804 - AO353_00295 0.81 -0.8
52,804 - AO353_00295 0.81 -0.1
52,804 - AO353_00295 0.81 +2.5
52,804 - AO353_00295 0.81 +1.3
52,805 + AO353_00295 0.81 +0.5
52,806 - AO353_00295 0.81 +0.4
52,806 - AO353_00295 0.81 +0.9
52,806 - AO353_00295 0.81 -1.1
52,806 - AO353_00295 0.81 +0.4
52,844 + AO353_00295 0.85 +0.4
52,844 + AO353_00295 0.85 -2.4
52,845 - AO353_00295 0.85 +1.2
52,845 - -0.1
52,845 - AO353_00295 0.85 +0.8
52,845 - AO353_00295 0.85 -0.1
52,845 - AO353_00295 0.85 -0.6
52,845 - AO353_00295 0.85 -0.1
52,845 - AO353_00295 0.85 +1.4
52,984 - -0.1
53,034 + -2.4
53,035 - -2.1
53,065 + -0.1
53,066 - +0.4
53,066 - +1.5
53,083 + -0.3
53,083 + -0.3
53,083 + +0.2
53,083 + -1.5
53,084 - -1.1
53,084 - -1.6
53,084 - +0.3
53,084 - +0.0
53,084 - -0.9
53,084 - -0.1
53,138 - +0.1
53,138 - -0.1
53,148 + -1.1
53,148 + -0.1
53,149 - +0.5
53,149 - +0.9
53,149 - +0.4
53,149 - -0.8
53,149 - +0.9
53,166 + -0.1
53,166 + +0.5
53,166 + -1.1
53,166 + -0.6
53,166 + -1.6
53,166 + -1.4
53,167 - +1.1
53,167 - -0.1
53,171 + -1.4
53,172 - -1.6
53,192 + +1.1
53,193 - +0.5
53,193 - +0.9
53,193 - +1.2
53,290 + -0.5
53,291 - -0.8
53,379 + AO353_00300 0.10 -0.4
53,380 - AO353_00300 0.10 +0.3
53,380 - AO353_00300 0.10 -2.4
53,380 - -0.1
53,455 + AO353_00300 0.15 -1.6
53,455 + AO353_00300 0.15 -0.1
53,455 + AO353_00300 0.15 -0.8
53,455 + AO353_00300 0.15 +0.2
53,455 + AO353_00300 0.15 +1.5
53,455 + AO353_00300 0.15 -0.1
53,455 + AO353_00300 0.15 -0.9
53,455 + AO353_00300 0.15 +0.1
53,456 - AO353_00300 0.15 +0.4
53,456 - AO353_00300 0.15 +2.3
53,559 + AO353_00300 0.21 +0.7
53,559 + AO353_00300 0.21 +0.9
53,559 + AO353_00300 0.21 +0.9
53,560 - AO353_00300 0.21 +1.3
53,592 + AO353_00300 0.23 -1.2
53,592 + AO353_00300 0.23 -0.5
53,592 + AO353_00300 0.23 +1.3
53,593 - AO353_00300 0.23 -0.2
53,593 - AO353_00300 0.23 -2.4
53,593 - AO353_00300 0.23 +0.5
53,595 + AO353_00300 0.23 -2.9
53,595 + AO353_00300 0.23 +2.5
53,595 + AO353_00300 0.23 +0.3
53,595 + AO353_00300 0.23 +1.2
53,595 + AO353_00300 0.23 -0.5
53,595 + AO353_00300 0.23 -1.5
53,596 - AO353_00300 0.23 -2.1
53,596 - AO353_00300 0.23 -1.1
53,596 - AO353_00300 0.23 -0.9
53,596 - AO353_00300 0.23 +0.3
53,596 - AO353_00300 0.23 -1.6
53,596 - AO353_00300 0.23 -0.9
53,615 + AO353_00300 0.24 +0.8
53,615 + AO353_00300 0.24 -2.6
53,678 + AO353_00300 0.28 +0.5
53,678 + AO353_00300 0.28 -0.7
53,678 + AO353_00300 0.28 -0.3
53,679 - AO353_00300 0.28 -2.1
53,679 - AO353_00300 0.28 +1.4
53,679 - AO353_00300 0.28 +0.4
53,679 - AO353_00300 0.28 -0.1
53,679 - AO353_00300 0.28 -1.1
53,679 - AO353_00300 0.28 -1.5
53,679 - AO353_00300 0.28 +0.4
53,679 - AO353_00300 0.28 -1.4
53,735 + AO353_00300 0.31 -0.3
53,735 + AO353_00300 0.31 -0.5
53,735 + AO353_00300 0.31 +0.9
53,735 + AO353_00300 0.31 -0.1
53,735 + AO353_00300 0.31 +0.7
53,735 + AO353_00300 0.31 -2.4
53,736 - AO353_00300 0.31 -1.6
53,736 - AO353_00300 0.31 -0.2
53,736 - AO353_00300 0.31 +0.5
53,792 + AO353_00300 0.34 -0.6
53,792 + AO353_00300 0.34 +0.6
53,792 + AO353_00300 0.34 +2.5
53,793 - AO353_00300 0.34 -0.1
53,793 - AO353_00300 0.34 -1.3
53,872 + AO353_00300 0.39 -1.1
53,879 - AO353_00300 0.39 -0.4

Or see this region's nucleotide sequence