Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15895

Experiment: Hexanoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS15885 and ABZR87_RS15890 overlap by 61 nucleotidesABZR87_RS15890 and ABZR87_RS15895 overlap by 98 nucleotidesABZR87_RS15895 and ABZR87_RS15900 are separated by 139 nucleotidesABZR87_RS15900 and ABZR87_RS15905 are separated by 418 nucleotides ABZR87_RS15885: ABZR87_RS15885 - hemolysin family protein, at 3,359,929 to 3,361,245 _RS15885 ABZR87_RS15890: ABZR87_RS15890 - carboxymuconolactone decarboxylase family protein, at 3,361,185 to 3,361,655 _RS15890 ABZR87_RS15895: ABZR87_RS15895 - MerR family transcriptional regulator, at 3,361,558 to 3,362,133 _RS15895 ABZR87_RS15900: ABZR87_RS15900 - hypothetical protein, at 3,362,273 to 3,362,500 _RS15900 ABZR87_RS15905: ABZR87_RS15905 - hypothetical protein, at 3,362,919 to 3,363,191 _RS15905 Position (kb) 3361 3362 3363Strain fitness (log2 ratio) -2 -1 0 1at 3360.593 kb on - strand, within ABZR87_RS15885at 3360.593 kb on - strand, within ABZR87_RS15885at 3360.593 kb on - strand, within ABZR87_RS15885at 3360.659 kb on - strand, within ABZR87_RS15885at 3360.775 kb on + strand, within ABZR87_RS15885at 3360.776 kb on - strand, within ABZR87_RS15885at 3360.776 kb on - strand, within ABZR87_RS15885at 3360.776 kb on - strand, within ABZR87_RS15885at 3360.877 kb on + strand, within ABZR87_RS15885at 3360.944 kb on - strand, within ABZR87_RS15885at 3360.944 kb on - strand, within ABZR87_RS15885at 3361.093 kb on + strand, within ABZR87_RS15885at 3361.093 kb on + strand, within ABZR87_RS15885at 3361.094 kb on - strand, within ABZR87_RS15885at 3361.094 kb on - strand, within ABZR87_RS15885at 3361.094 kb on - strand, within ABZR87_RS15885at 3361.094 kb on - strand, within ABZR87_RS15885at 3361.094 kb on - strand, within ABZR87_RS15885at 3361.094 kb on - strand, within ABZR87_RS15885at 3361.149 kb on + strandat 3361.150 kb on - strandat 3361.150 kb on - strandat 3361.150 kb on - strandat 3361.150 kb on - strandat 3361.150 kb on - strandat 3361.150 kb on - strandat 3361.303 kb on + strand, within ABZR87_RS15890at 3361.303 kb on + strand, within ABZR87_RS15890at 3361.304 kb on - strand, within ABZR87_RS15890at 3361.304 kb on - strand, within ABZR87_RS15890at 3361.304 kb on - strand, within ABZR87_RS15890at 3361.305 kb on + strand, within ABZR87_RS15890at 3361.305 kb on + strand, within ABZR87_RS15890at 3361.306 kb on - strand, within ABZR87_RS15890at 3361.468 kb on + strand, within ABZR87_RS15890at 3361.468 kb on + strand, within ABZR87_RS15890at 3361.468 kb on + strand, within ABZR87_RS15890at 3361.469 kb on - strand, within ABZR87_RS15890at 3361.469 kb on - strand, within ABZR87_RS15890at 3361.469 kb on - strand, within ABZR87_RS15890at 3361.469 kb on - strand, within ABZR87_RS15890at 3361.469 kb on - strand, within ABZR87_RS15890at 3361.498 kb on + strand, within ABZR87_RS15890at 3361.499 kb on - strand, within ABZR87_RS15890at 3361.499 kb on - strand, within ABZR87_RS15890at 3361.594 kb on + strandat 3361.782 kb on - strand, within ABZR87_RS15895at 3361.926 kb on - strand, within ABZR87_RS15895at 3362.063 kb on + strand, within ABZR87_RS15895at 3362.063 kb on + strand, within ABZR87_RS15895at 3362.063 kb on + strand, within ABZR87_RS15895at 3362.064 kb on - strand, within ABZR87_RS15895at 3362.064 kb on - strand, within ABZR87_RS15895at 3362.064 kb on - strand, within ABZR87_RS15895at 3362.064 kb on - strand, within ABZR87_RS15895at 3362.076 kb on + strandat 3362.076 kb on + strandat 3362.076 kb on + strandat 3362.077 kb on - strandat 3362.077 kb on - strandat 3362.077 kb on - strandat 3362.077 kb on - strandat 3362.077 kb on - strandat 3362.144 kb on + strandat 3362.144 kb on + strandat 3362.145 kb on - strandat 3362.151 kb on + strandat 3362.163 kb on + strandat 3362.163 kb on + strandat 3362.163 kb on + strandat 3362.164 kb on - strandat 3362.289 kb on + strandat 3362.290 kb on - strandat 3362.290 kb on - strandat 3362.512 kb on + strandat 3362.513 kb on - strandat 3362.514 kb on + strandat 3362.515 kb on - strandat 3362.515 kb on - strandat 3362.515 kb on - strandat 3362.515 kb on - strandat 3362.515 kb on - strandat 3362.515 kb on - strandat 3362.653 kb on + strandat 3362.688 kb on + strandat 3362.689 kb on - strandat 3362.768 kb on - strandat 3362.777 kb on + strandat 3362.777 kb on + strandat 3362.777 kb on + strandat 3362.777 kb on + strandat 3362.777 kb on + strandat 3362.778 kb on - strandat 3362.797 kb on + strandat 3362.797 kb on + strandat 3362.797 kb on + strandat 3362.799 kb on - strandat 3362.872 kb on + strandat 3362.872 kb on + strandat 3362.872 kb on + strandat 3362.872 kb on + strandat 3362.873 kb on - strandat 3362.873 kb on - strandat 3362.873 kb on - strandat 3362.873 kb on - strandat 3362.873 kb on - strandat 3362.898 kb on + strandat 3362.898 kb on + strandat 3362.898 kb on + strandat 3362.899 kb on - strandat 3362.906 kb on + strandat 3362.907 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
remove
3,360,593 - ABZR87_RS15885 0.50 +0.3
3,360,593 - ABZR87_RS15885 0.50 +0.5
3,360,593 - ABZR87_RS15885 0.50 -0.2
3,360,659 - ABZR87_RS15885 0.55 -0.5
3,360,775 + ABZR87_RS15885 0.64 -0.4
3,360,776 - ABZR87_RS15885 0.64 +0.3
3,360,776 - ABZR87_RS15885 0.64 +0.2
3,360,776 - ABZR87_RS15885 0.64 +0.2
3,360,877 + ABZR87_RS15885 0.72 +0.1
3,360,944 - ABZR87_RS15885 0.77 -0.4
3,360,944 - ABZR87_RS15885 0.77 +0.3
3,361,093 + ABZR87_RS15885 0.88 -0.1
3,361,093 + ABZR87_RS15885 0.88 -0.3
3,361,094 - ABZR87_RS15885 0.88 -0.0
3,361,094 - ABZR87_RS15885 0.88 -0.1
3,361,094 - ABZR87_RS15885 0.88 +0.7
3,361,094 - ABZR87_RS15885 0.88 -0.7
3,361,094 - ABZR87_RS15885 0.88 +0.3
3,361,094 - ABZR87_RS15885 0.88 +0.1
3,361,149 + -0.7
3,361,150 - +0.8
3,361,150 - -0.1
3,361,150 - +1.3
3,361,150 - +0.4
3,361,150 - +0.4
3,361,150 - +0.3
3,361,303 + ABZR87_RS15890 0.25 -0.2
3,361,303 + ABZR87_RS15890 0.25 -0.8
3,361,304 - ABZR87_RS15890 0.25 +0.4
3,361,304 - ABZR87_RS15890 0.25 +0.2
3,361,304 - ABZR87_RS15890 0.25 +0.8
3,361,305 + ABZR87_RS15890 0.25 +0.1
3,361,305 + ABZR87_RS15890 0.25 -1.4
3,361,306 - ABZR87_RS15890 0.26 -0.7
3,361,468 + ABZR87_RS15890 0.60 -0.1
3,361,468 + ABZR87_RS15890 0.60 +0.9
3,361,468 + ABZR87_RS15890 0.60 +0.2
3,361,469 - ABZR87_RS15890 0.60 +0.9
3,361,469 - ABZR87_RS15890 0.60 +0.6
3,361,469 - ABZR87_RS15890 0.60 +0.3
3,361,469 - ABZR87_RS15890 0.60 +0.1
3,361,469 - ABZR87_RS15890 0.60 +0.8
3,361,498 + ABZR87_RS15890 0.66 +0.5
3,361,499 - ABZR87_RS15890 0.67 +1.6
3,361,499 - ABZR87_RS15890 0.67 +0.4
3,361,594 + -0.2
3,361,782 - ABZR87_RS15895 0.39 -0.4
3,361,926 - ABZR87_RS15895 0.64 +0.8
3,362,063 + ABZR87_RS15895 0.88 +0.8
3,362,063 + ABZR87_RS15895 0.88 -0.4
3,362,063 + ABZR87_RS15895 0.88 -0.9
3,362,064 - ABZR87_RS15895 0.88 +0.1
3,362,064 - ABZR87_RS15895 0.88 -1.1
3,362,064 - ABZR87_RS15895 0.88 -0.0
3,362,064 - ABZR87_RS15895 0.88 -2.4
3,362,076 + -0.8
3,362,076 + -0.1
3,362,076 + +0.8
3,362,077 - +0.2
3,362,077 - +0.4
3,362,077 - -0.3
3,362,077 - -0.4
3,362,077 - +0.3
3,362,144 + -0.4
3,362,144 + +0.2
3,362,145 - -0.6
3,362,151 + -1.5
3,362,163 + +0.3
3,362,163 + +0.4
3,362,163 + -1.0
3,362,164 - +0.3
3,362,289 + -0.1
3,362,290 - -0.1
3,362,290 - -0.4
3,362,512 + -0.5
3,362,513 - -2.0
3,362,514 + +0.4
3,362,515 - +0.8
3,362,515 - +0.5
3,362,515 - +1.1
3,362,515 - -0.3
3,362,515 - +0.3
3,362,515 - +0.3
3,362,653 + +1.0
3,362,688 + -0.1
3,362,689 - +0.7
3,362,768 - -0.7
3,362,777 + +0.8
3,362,777 + -0.8
3,362,777 + -0.6
3,362,777 + +0.3
3,362,777 + +0.2
3,362,778 - +1.0
3,362,797 + +0.3
3,362,797 + -0.2
3,362,797 + +0.6
3,362,799 - +0.3
3,362,872 + +0.1
3,362,872 + -0.3
3,362,872 + -0.3
3,362,872 + +0.1
3,362,873 - -0.2
3,362,873 - -0.6
3,362,873 - +0.0
3,362,873 - +0.6
3,362,873 - -0.5
3,362,898 + +0.3
3,362,898 + +0.0
3,362,898 + +0.2
3,362,899 - -0.4
3,362,906 + +0.4
3,362,907 - -0.2

Or see this region's nucleotide sequence